Sorex fumeus (smoky shrew): 130019108 Help Entry 130019108         CDS       T10594                                  Symbol COL4A1 Name (RefSeq) collagen alpha-1(IV) chain   KO K06237   collagen type IV alpha Organism sfum  Sorex fumeus (smoky shrew) Pathway sfum04151   PI3K-Akt signaling pathway sfum04382   Cornified envelope formation sfum04510   Focal adhesion sfum04512   ECM-receptor interaction sfum04518   Integrin signaling sfum04820   Cytoskeleton in muscle cells sfum04926   Relaxin signaling pathway sfum04933   AGE-RAGE signaling pathway in diabetic complications sfum04974   Protein digestion and absorption sfum05146   Amoebiasis sfum05165   Human papillomavirus infection sfum05200   Pathways in cancer sfum05222   Small cell lung cancer Brite KEGG Orthology (KO) [BR:sfum00001]  09130 Environmental Information Processing   09132 Signal transduction    04151 PI3K-Akt signaling pathway     130019108 (COL4A1)   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     130019108 (COL4A1)    04518 Integrin signaling     130019108 (COL4A1)  09140 Cellular Processes   09144 Cellular community - eukaryotes    04510 Focal adhesion     130019108 (COL4A1)   09142 Cell motility    04820 Cytoskeleton in muscle cells     130019108 (COL4A1)  09150 Organismal Systems   09152 Endocrine system    04926 Relaxin signaling pathway     130019108 (COL4A1)   09154 Digestive system    04974 Protein digestion and absorption     130019108 (COL4A1)   09158 Development and regeneration    04382 Cornified envelope formation     130019108 (COL4A1)  09160 Human Diseases   09161 Cancer: overview    05200 Pathways in cancer     130019108 (COL4A1)   09162 Cancer: specific types    05222 Small cell lung cancer     130019108 (COL4A1)   09172 Infectious disease: viral    05165 Human papillomavirus infection     130019108 (COL4A1)   09174 Infectious disease: parasitic    05146 Amoebiasis     130019108 (COL4A1)   09167 Endocrine and metabolic disease    04933 AGE-RAGE signaling pathway in diabetic complications     130019108 (COL4A1)  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    04147 Exosome [BR:sfum04147]     130019108 (COL4A1)    00536 Glycosaminoglycan binding proteins [BR:sfum00536]     130019108 (COL4A1) Exosome [BR:sfum04147]  Exosomal proteins   Exosomal proteins of other cancer cells    130019108 (COL4A1) Glycosaminoglycan binding proteins [BR:sfum00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    130019108 (COL4A1) BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  Collagen C4 Motif Other DBs NCBI-GeneID:  130019108 NCBI-ProteinID:  XP_055965661 LinkDB All DBs Position Unknown AA seq 1665 aa AA seqDB search MGPRAGVWLLLPALLLARAAAKGGGGCGGSGCGKCDCHGVKGQKGERGLPGLQGVIGFPG MQGPEGPVGPPGQKGDPGEPGLPGTKGTRGPPGVAGFPGNPGLPGIPGQDGPPGPPGIPG CNGTKGERGPMGPPGLPGFMGSQGPPGLPGMKGDPGEILGHVPGTLLKGERGFPGPPGVP GSPGLPGLQGPVGPPGFQGVPGPPGPPGPPGEKGQMGLSFQGPKGEKGDQGVSGPPGVPG QAQVKEKGETATKGEKGEKGEPGFQGMPGFGEKGEPGKPGPRGKPGKDGEKGDRGFPGLP GEAGFPGQQGLEGRKGDKGDAGPPGPPGTIIGDGPLGEKGERGYPGTPGARGEPGPKGFP GQQGLPGPPGFSIPGQIGAPGIPGERGQKGDQGPPGVSLPGPSGRDGLQGPPGPPGPPGQ PGHTNGIVECQPGPQGDRGPPGTPGQPGLSGEVGEKGQKGEGCLTCDLTGLRGPPGPQGP PGEIGFPGQPGAKGDRGLPGRNGLEGLPGPQGVPGLMGQPGAKGEPGEIYLDMRLKGDKG DPGLPGQPGMPGRAGSPGRDGQPGLPGPKGSPGSIGLKGERGPPGGVGFPGSRGDTGPPG PPGFGPIGPVGDKGQAGFPGNPGTPGLPGPKGEAGKVVPLPGPPGAEGLPGSPGFQGPQG DRGLPGTPGRPGLPGEKGAVGQPGIGFPGPPGPKGVDGLPGEAGPPGSPGRQGFNGLPGS PGLPGQKGEPGVGQPGLKGLPGLPGIPGTPGEKGSVGGPGVPGEHGAIGPPGLQGIRGDP GPPGLPGPQGAPGLPGMGPPGVMGPPGGQGPPGSSGPPGLKGEKGFPGFPGLDMPGPKGD KGSQGLPGLTGQLGLPGLPGQQGTPGLPGFPGPKGEMGVMGTPGQPGLPGSAGSPGLPGL KGDLGLPGSSGPRGEPGLKGEKGEMGVPGMPGSMDNVDMESMKGEKGEQGEKGQIGPTGD KGSRGDPGTPGVPGKDGQAGQPGQPGPKGDPGIGGSPGAPGLPGPKGSVGGMGMPGAPGV KGLPGVPGPQGLPGVPGEKGTKGEKGQAGLPGIGIPGRPGDKGDQGLAGFPGSPGEKGEK GSIGAPGMPGSPGPKGSPGSAGHPGSPGPPGEKGDKGLPGLDGVPGVKGEAGVPGRPGPT GPAGQKGEPGSDGFPGSAGEKGEPGLPGRGFPGFPGAKGDKGSKGEVGFPGLSGSPGIPG TKGEPGYMGPPGPQGQPGLPGAPGHPMEGPKGDRGPQGQPGLPGMPGPMGPPGLPGLDGL KGDRGNPGRPGSPGAPGPKGDPGFQGMPGIGGAPGLTGSKGDVGPPGVPGFQGQKGLPGL QGVKGDPGDQGYPGAKGLPGPPGPPGPYDIIKGEPGLPGPEGPAGLKGLQGPPGPKGQQG VTGSTGLPGPPGIPGFDGAPGQKGETGPFGPMGPRGFPGPPGPDGLPGSMGPPGTPSVDH GFLVTRHSQTVDDPQCPPGTKVLYHGYSLLYVQGNERAHGQDLGTAGSCLRKFSTMPFLF CNINNVCNFASRNDYSYWLSTPEPMPMSMAPVTGDGIRPFISRCAVCEAPAMVMAVHSQT IQIPPCPNGWSSLWIGYSFVMHTSAGAEGSGQALASPGSCLEEFRSAPFIECHGRGTCNY YANAYSFWLATIERNEMFKKPTPSTLKAGELRTHVSRCQVCMRRT NT seq 4998 nt NT seq  +upstreamnt  +downstreamnt atggggccccgcgccggcgtgtggctgctgctgcccgcgctcctgctggcccgcgccgcc gccaagggtggcggaggctgtggcggctctggctgtggaaaatgtgactgccacggagtg aaaggacagaagggtgagaggggactccccggattacaaggtgtcataggctttcctggc atgcaaggacccgagggaccagtgggacccccaggacagaagggtgatcccggagaacca ggacttcccggaaccaaaggaaccagaggccctcctggagtggccggcttccccggaaac ccaggcctcccgggtatccctggccaagacggccccccagggcccccaggaatcccaggc tgcaacggaacaaagggtgaacgcgggccgatgggcccccccggcctgcctggattcatg ggcagccagggaccccccgggctccccggaatgaagggggaccctggagagatcctgggc catgtccccgggacactgttgaaaggagagcgaggctttcctggacccccaggagtaccg ggctcgccaggattaccaggactgcaagggcccgttggcccccccggattccaaggagtc cctggtcctccagggcctcccggcccgcccggtgagaagggacagatgggcctcagcttc cagggcccaaaaggcgagaagggggaccagggcgtgagtgggcctcccggggtcccggga caggcgcaggtcaaggagaaaggcgagacggccaccaagggcgagaagggagagaaagga gagcccggctttcaggggatgccaggctttggggagaaaggagaacccggaaaaccaggg ccccgaggcaagcccggaaaagacggcgagaagggagaccgagggtttccgggccttccc ggcgaggcaggcttcccaggacagcagggcctagaaggccgcaagggagacaaaggtgac gccggaccccccggacctcccggaactatcatcggtgacgggccgctgggcgagaaggga gaacgagggtaccccgggactccgggggccagaggggagccgggccccaaaggcttccca ggacagcaaggcctgccgggacccccaggcttctccatcccaggccagatcggtgctccc ggcatccccggagagagaggacagaaaggcgaccaggggcccccgggcgtgtctctgcca ggaccaagtggacgggacgggctccagggcccccccgggcccccgggcccccctgggcag ccaggccacaccaatggaatcgtggaatgccagcctggaccgcagggtgaccggggcccc cctggaactccaggccagccagggctgagcggcgaagtcggagagaagggtcagaaggga gaaggctgcctcacctgcgacctcacagggctgcgcggcccccctgggccacagggaccc ccaggagaaatcgggtttccgggacagccaggagcaaagggtgaccggggactgcctggc cggaacggtctggagggcctgccgggaccccaaggtgtgccgggactgatgggccagccg ggagccaagggcgagcccggcgagatctacctggacatgcggctcaagggtgacaaggga gaccccggcttacctggacagcctggcatgccaggaagagccggttccccaggaagagac ggccagccggggctgcccggccccaaaggctccccgggctcaataggactgaaaggagag cgtgggccccccggaggcgtgggattccccggcagccgtggtgacactggccccccggga cccccagggttcggccccattggccccgttggtgacaaaggacaagccggttttccaggg aaccctggtacccctgggctgccaggtcccaagggtgaggcggggaaagttgtccccctg cccggcccccctggagcagaaggccttcccggctcacccggtttccaaggaccccaaggt gaccggggtttacctggaactcccggaagacccggcctccccggagagaaaggtgctgtg ggccagcctggcattggattcccagggcctccggggcccaaaggtgtggacggcttacct ggagaggccggaccccctgggagccccggccgccagggcttcaacggcctccccgggagc cccggcctgccgggccagaagggggagcccggggtgggacagccaggcctcaagggactg cctggccttcctggcatccctggcacacctggagagaaggggagcgtcgggggaccaggc gtccctggcgagcatggagccatcggcccccctggcctgcagggtatccgaggtgacccc gggcctcccggcttgccgggtccccaaggtgctcccggcctccctggaatgggccccccc ggagtgatgggcccccctggaggacaaggacccccgggctcctcaggcccccctggactt aaaggagagaagggcttccccggcttccccggccttgacatgccaggccccaagggcgat aaaggctcccaggggctgcccggcctcacgggccagctggggcttcccggccttcctgga cagcagggcacgcctggtctccccggcttcccaggccccaaaggagagatgggcgtcatg ggcacccctggacagcctggccttcccggatcagcaggcagcccagggctgccgggcttg aagggggatctgggcttgcctggctcctctgggccccggggagagcctggcttgaaaggc gagaaaggagaaatgggcgtccctggcatgcctggctccatggacaacgtggacatggaa agcatgaaaggggagaagggcgagcagggcgagaaaggacaaatcggacccactggcgac aaggggtcccggggagacccaggaacccccggcgttccagggaaggatggccaggctggg cagccgggtcagccaggacctaaaggcgaccctggtattggtggcagcccgggggcccca gggcttcctggccccaaagggtcagttggtggaatgggcatgccaggagcacccggcgtg aaggggctgcccggggtccctggccctcagggcctgcctggcgtcccgggggagaagggc accaagggcgagaagggccaggcagggctgcctggcatcggcattcctgggcggcctgga gacaagggagaccagggcctggcgggcttcccagggagtcccggagagaagggcgagaag ggaagcattggggcaccgggaatgcccggctcccctgggcccaagggctcgcctggcagc gctggccacccagggagcccggggccgcctggagagaaaggagacaagggcctcccgggc ctggacggcgtccccggcgtgaaaggagaagcaggtgtccccggaaggcctggccccaca ggtcccgctgggcagaagggggagccaggcagtgacgggtttccagggtcagcaggagag aagggcgagccagggcttcctggaagaggcttcccggggttccccggcgccaagggagac aaaggttccaaaggcgaagtgggcttcccaggcctgtctggcagcccggggatccccgga accaagggagagccaggatacatgggcccgcctggaccccaagggcaaccgggcttgccc ggagctcctggccaccccatggagggccccaaaggcgaccgtggcccccagggccagccc ggactgccaggcatgccaggccccatgggtccccccggcctccccgggctggacggcctg aaaggggacagaggaaacccaggcaggccgggaagccctggcgcccccggacccaaagga gaccctggattccagggcatgccgggcatcggcggtgctccagggctgactggctccaag ggggatgtcgggcctcctggtgtcccaggattccaaggtcagaaggggctgcccggcctg cagggagtgaagggcgacccaggagatcaaggctaccccggggcgaaaggtctccccggc ccccccggtccccctggcccctatgacatcatcaagggggaacccggcctccctggcccc gagggtcctgccggcctgaaagggctccagggccctcccggccccaaaggacagcaaggt gtgaccggctccaccggcctgcccggaccaccaggcattcccggtttcgacggcgccccc ggccagaaaggagaaactggcccatttgggccgatgggtccacgaggctttccgggccca ccaggccccgatgggctgccgggctccatgggacccccggggaccccatcggtggaccac ggcttcctggtgaccaggcacagccagaccgtggacgacccgcagtgtccgcctggcacc aaggtcctgtaccacggctactccctgctctacgtgcagggcaacgagcgggcgcacggc caggacctgggcacggcgggcagctgcctgcgtaagttcagcaccatgcccttcctcttc tgcaacatcaacaacgtctgcaacttcgcctcccgcaacgactactcctactggctgtcc acgcccgagcccatgcccatgtccatggcgcccgtcactggggatggcatccgccccttc atcagcaggtgtgcggtgtgcgaggccccggccatggtgatggccgtgcacagccagacc atccagatcccgccatgccccaacggctggtcgtcgctgtggattggctactcctttgtc atgcacaccagcgcgggtgctgagggctccggccaggccctggcgtcccccggctcctgc ctggaggagttccgcagcgcgcccttcatcgagtgccacggccgcggcacctgcaactac tacgccaatgcttacagcttctggctcgccaccatcgagcggaatgagatgttcaagaag cccacaccgtccacgctgaaggccggggagttgcgcacgcacgtgagccgctgccaggtg tgcatgaggagaacatag

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