Sorex fumeus (smoky shrew): 130019113
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Entry
130019113 CDS
T10594
Symbol
RB1CC1
Name
(RefSeq) RB1-inducible coiled-coil protein 1
KO
K17589
RB1-inducible coiled-coil protein 1
Organism
sfum Sorex fumeus (smoky shrew)
Pathway
sfum04140
Autophagy - animal
sfum04211
Longevity regulating pathway
sfum05010
Alzheimer disease
sfum05014
Amyotrophic lateral sclerosis
sfum05016
Huntington disease
sfum05017
Spinocerebellar ataxia
sfum05022
Pathways of neurodegeneration - multiple diseases
Brite
KEGG Orthology (KO) [BR:
sfum00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
130019113 (RB1CC1)
09150 Organismal Systems
09149 Aging
04211 Longevity regulating pathway
130019113 (RB1CC1)
09160 Human Diseases
09164 Neurodegenerative disease
05010 Alzheimer disease
130019113 (RB1CC1)
05014 Amyotrophic lateral sclerosis
130019113 (RB1CC1)
05016 Huntington disease
130019113 (RB1CC1)
05017 Spinocerebellar ataxia
130019113 (RB1CC1)
05022 Pathways of neurodegeneration - multiple diseases
130019113 (RB1CC1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
sfum01009
]
130019113 (RB1CC1)
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sfum04131
]
130019113 (RB1CC1)
03029 Mitochondrial biogenesis [BR:
sfum03029
]
130019113 (RB1CC1)
Protein phosphatases and associated proteins [BR:
sfum01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
130019113 (RB1CC1)
Membrane trafficking [BR:
sfum04131
]
Autophagy
Autophagosome formation proteins
ULK complex
130019113 (RB1CC1)
Mitochondrial biogenesis [BR:
sfum03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-independent mechanism factors
130019113 (RB1CC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ATG11
ATG17_like
Metal_resist
TBK1_ULD
ubiquitin
Jag_N
Motif
Other DBs
NCBI-GeneID:
130019113
NCBI-ProteinID:
XP_055965671
LinkDB
All DBs
Position
Unknown
AA seq
1584 aa
AA seq
DB search
MKLYVFLVNTGTTLTFDTELTVQTVADLKHAVHSKYKIAIPHQVLVVNGGECMAAERRVC
TYSAGTDTNPIFLFNKEMILCDRPPTIPKTTFSTENDMEIKVEESLMMPAVFHTVASRTQ
LAVEMYEVAKKLCSFCEGLVHDEHLQHQGWAAIMANLEDCASSYQRLLAKFESAYAGYLQ
SIEDIKLKLTHLGTAVSVMAKIPLLECLTRHSYRECLGRLDSVSEHERPEKAALRTSAEL
VLSPETPRTADRSPATSFPRAGDPGAPEAADAGSGKEVGESGQSPLPQEDAAAAEAQDGG
LPLFNVSLLDWINVQDRPNDVESLVRKCFDSMSRLDPRIIRPFIAECRQTIAKLDNQNMK
AIKGLEDRLYALDQMIASCSRLVNEQKELAQGFLANQMRAENLKDASVLPDLCLSHANQL
MIMLQNHRKLLDIKQKCTTAKQELANNLHVRLKWCCFVMLHADQDGEKLQALLRLVIELL
ERVRIVEALSTVPQMYCLAVVEVVRRKMFIKHYREWAGALVKDGKRLYEAEKSKRESFGK
LFRKSFLRNRLFRGLDSWPPSFCTQKPRKFDCELPDISLKDLQFLQSFCPSEVQPFLRVP
LLCDFEPLHQHVLALHNLVKAAQSLDEMSQTITDLLSEQKASVGPTSPQSASSPRRESAP
GTTTTTSPRSPPPLTVQDPLCPAVCPLEELSPDSIDAHTFDFETIPHPNIEQTIHQASLD
LDSLAESPESDFMSAVNEFVIEENLSSPNPISDPQSPEMMVESLYSSVINAIDSRRMQDT
NVCGKEDSGDHALTARLERCRAVAHDSHFSIQTIKEDLCHFRTLVQKEQCDFSNSLKCTA
VEIRNIIEKVRCSLEATLTGKHQRELQSLKSEYEGKLETLLKESEESENKIKKLKGELVC
LEEVLQNKDNEFALVKHEKEAVICLQTEKEQKLLEMEKIMQTQDREISELRQSRATALED
LKKAQAENAEKLALLRAELGSLEQSRLRELEDSLQGRHAQELERARADHRESLEELRRDS
QQRIEQIQASHAAATQEKEQQLQELKRKVSSLSDTRCKLEVELALKEAETDEMKMLLEES
KAQQKETLKSLLAQETENLRTEIGQLRQKIQDNNESYQVGLGELRTLMTIEKDQCISELI
SRHEEESDLLKAELSKVTSLHHQAFEIEKKLKEEIGELQRKLDSELKALEKQKDEKMSQQ
EERYEAIIQKLEKDREGFVVSQEQDREQLIQKLTGEKEEAVQAALKEFKLEREAVEKELL
EKVKHLETQIAKSPAVESAREDSVSLVAELQEKLQEEKAKFLEQLEEQEKRKNEEMQNVR
TSLIAEQQTNFNTVLTREKMKKENIINDLSDKLKTTMQQQERDKDLIESLSEDRARLLEE
KKQLEEEVSRLRGSSLGPPYGASAPELCGACAPPLPCEAEDGRVDSAMDTSTMSVQENIH
MLSEEKQRIMLLERTLQLKEEENKRLNQRLMSQSMSSVSARHSEKIAIRDFQVGDLVLII
LDERHDNYVLFTVSPTLYFLHSESLPALDLKPGEGASGATRRPWVLGKVMEKEYCQAKKA
QNRFKVPLGTKFYRVKAVSWNKKV
NT seq
4755 nt
NT seq
+upstream
nt +downstream
nt
atgaagttatatgtatttctggttaacactggaactactctgacatttgacactgaactt
acagtgcaaactgtggccgacctcaagcatgccgtccacagcaagtacaagatcgccatc
ccgcaccaggtgctggtggtcaacggcggcgagtgcatggccgccgagcggagggtctgc
acctacagcgccggcacggacacaaatcccattttccttttcaacaaagaaatgatcttg
tgtgaccgcccgcccactattcctaaaaccaccttttcaacagaaaatgacatggaaata
aaagtggaagagtctctcatgatgccggcagtgtttcacactgttgcttcaaggacacaa
cttgcagtggagatgtacgaggtggccaagaagctgtgctccttctgcgaggggctggtg
cacgacgagcacctgcagcaccagggctgggccgccatcatggccaacctggaggactgc
gccagctcctaccagcggctgctcgccaagttcgagagcgcctacgccggctacctgcag
tccatcgaggacatcaagctgaagctcacgcacttaggaactgcggtgtccgtgatggcg
aagatcccgctgctcgagtgcctgacccgacacagctaccgcgagtgtctggggagactg
gactccgtgtctgagcacgagcgccccgagaaggccgcgctgagaacctccgctgaactg
gtgctttcccctgagacgcctcggacagccgaccggtccccggccacctcgttccccagg
gccggggaccccggcgcccccgaggcggccgatgccggaagcgggaaggaagtcggggag
tctggccagagtccgctcccgcaggaggacgccgcggcggcggaggcgcaggacgggggt
ctgcctctgttcaacgtctccctgctcgactggataaacgtgcaggatcgacccaacgac
gtggagtctctggtcagaaagtgcttcgattctatgagcaggcttgatccgaggatcatt
cggccctttatagcagagtgccgtcagactatcgccaaacttgataaccagaacatgaaa
gccatcaaagggctggaggaccgcctgtacgccctggaccagatgatcgccagctgcagc
cgcctggtgaacgagcagaaggaactcgctcagggatttttagctaatcagatgagagct
gaaaacttgaaagatgcgtctgtattacctgatttgtgcttgagtcatgcgaatcagctg
atgattatgttacaaaatcatagaaaactgttggatattaaacagaagtgtaccactgcc
aaacaagaactagctaataaccttcacgtcagactgaagtggtgttgctttgtgatgctt
catgccgaccaggatggagagaaactgcaggctttgctccgcctcgtgatcgagctgttg
gaaagagtcagaatcgtcgaagctctgagtacagttccacagatgtactgcttagctgtc
gtcgaggtagtcaggaggaaaatgttcataaaacactacagggagtgggctggtgcttta
gtgaaggatggaaagcgattatatgaagctgaaaagtcaaaaagggagtcctttgggaaa
ctattcaggaaatctttcctaagaaatcgcctgtttaggggattggactcctggcctccc
tccttttgtactcagaagcctcgaaagtttgactgtgaacttccagatatttcattgaaa
gatttacagttcctgcaatcattttgtccctcagaagttcagccattcctcagggtccct
ttactctgtgactttgaaccgctacaccagcacgttctcgcgctccacaacctggtcaag
gcagcccagagtttggacgagatgtcccagaccatcacagacctgctgagtgaacaaaag
gcgtccgtgggtccgacttccccccagtccgcctcctcgccccggagggaaagcgcgccg
gggaccacaactactacctcaccgagaagccctcctccgctcactgtccaggaccccctg
tgccctgcggtctgccccctggaagagttgtctccggacagcatcgacgcacataccttt
gactttgagaccatcccccaccccaacatagagcagacgattcaccaggcgtccttagac
ctggactccttagccgagagccccgagtcggacttcatgtctgcggtgaacgagttcgtg
atagaggagaacctttcgtccccgaaccccatcagcgacccgcagagcccagagatgatg
gtggagtccctgtactcgtcggtcatcaacgcaatagacagcaggcgcatgcaggatacg
aacgtgtgtgggaaggaggattcgggagaccacgctctcaccgcccggctggagagatgc
cgcgcggtggcccacgactctcacttcagcatccagaccattaaggaggacctctgccac
ttccgaacattggtgcagaaagagcagtgtgacttctcgaattctctcaagtgcacagct
gtagaaatacggaacattattgagaaagtcagatgctccctggaagcaacactaacggga
aagcaccagcgcgaactacagtctttgaagagtgagtacgaaggtaaactcgagacacta
ctgaaggagagcgaggaaagcgaaaacaaaatcaaaaaattgaaaggcgagctggtctgc
ctcgaggaggtcttgcagaacaaagataacgagtttgcgctggtgaagcacgaaaaagaa
gccgtcatctgcctgcagaccgaaaaggagcagaagctactagagatggagaagatcatg
cagacgcaagaccgcgagatcagcgagctccggcagtcccgggccacggcgctggaagac
ttgaagaaggcgcaggcggagaacgccgagaagctggcgctgctgagggcggagctcggg
agcctggagcagagccgcctccgggagctggaggacagcctgcagggccggcacgcccag
gagctcgagcgggcccgcgccgaccaccgggagtccctggaggagctgaggcgggacagc
cagcagcggatcgagcagatccaagcgtcccacgccgccgccacgcaggagaaggagcag
cagctgcaggagctgaagcggaaggtctccagcctgtccgacacgaggtgcaagctcgag
gtggagctggcgctgaaggaagccgagacggatgagatgaagatgctgctggaagagagc
aaagcccagcagaaggagaccctgaagtccctcctggcgcaggagacggagaacctgaga
acggaaatcggccagcttcgccagaagatccaggataacaacgagagctatcaggtgggc
ctgggggagttgaggactttgatgaccatcgagaaagatcagtgcatttcagagttgatc
agcagacacgaagaagagtccgatctgcttaaagcggagctaagcaaggtgacctctttg
catcatcaagcctttgagatagaaaagaagctgaaagaagagatcggcgaactgcagaga
aaattggactccgagttgaaagctcttgaaaaacagaaagatgaaaaaatgagccaacaa
gaagagaggtacgaagctatcatccagaaactggagaaagacagagaggggtttgtcgtg
agccaggaacaggacagagaacagctgattcagaagctcaccggtgagaaggaagaagca
gttcaggctgccctcaaggaatttaaattggagcgagaagcggttgagaaagagttgtta
gaaaaagttaagcaccttgagactcagatagcaaaaagtcctgccgtcgagtctgctaga
gaagattctgtaagcttagttgctgaacttcaagaaaagcttcaggaagaaaaagctaaa
tttttagaacaacttgaagagcaggagaaaagaaagaatgaggaaatgcagaatgtccga
acatctttgatcgcagaacagcagaccaacttcaacaccgttctcaccagagagaaaatg
aagaaagaaaacatcatcaacgacctcagtgacaagctcaagaccacgatgcagcagcag
gagcgggataaagatctgatcgagtcgctgtccgaagaccgggcgcgcttgctggaggag
aagaagcagctggaggaggaagtcagcaggctgcgcgggagcagcctgggccccccctac
ggcgcctcggcccccgagctctgcggggcctgcgccccgccgctgccctgcgaggccgag
gacgggagagtggactccgcgatggacaccagcacgatgtctgtgcaagaaaatatccat
atgctttctgaagagaaacagaggataatgcttttagaacgaacgttacagttgaaagaa
gaagaaaacaagcggctgaaccagcggctgatgtcgcagagcatgtcttcagtgtctgcg
cggcactcggagaagatcgccattcgagatttccaggtgggggatctcgtcctcatcatc
ctcgacgaacgccacgacaactacgtgttattcaccgtcagtcccaccttgtacttcctc
cattcagagtcgctgcccgccctggacctcaagccgggcgagggggcttcaggtgcaact
agaagaccctgggtgcttgggaaagtcatggagaaggaatactgtcaggccaaaaaggca
caaaacagattcaaagttcctctggggacaaagttttacagagtgaaagctgtgtcctgg
aataagaaagtataa
DBGET
integrated database retrieval system
