Sorex fumeus (smoky shrew): 130019116
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Entry
130019116 CDS
T10594
Symbol
LMO7
Name
(RefSeq) LIM domain only protein 7 isoform X1
KO
K06084
F-box protein 20
Organism
sfum Sorex fumeus (smoky shrew)
Pathway
sfum04520
Adherens junction
Brite
KEGG Orthology (KO) [BR:
sfum00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04520 Adherens junction
130019116 (LMO7)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
sfum04121
]
130019116 (LMO7)
Ubiquitin system [BR:
sfum04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
130019116 (LMO7)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF4757
PDZ
LIM
PDZ_2
PDZ_6
Motif
Other DBs
NCBI-GeneID:
130019116
NCBI-ProteinID:
XP_055965670
LinkDB
All DBs
Position
Unknown
AA seq
1509 aa
AA seq
DB search
MQDYNKDDMSYRRTSVIEPKSALPFNRFLPNKSRQPSYVPAPLRKKIPDKNEDNRRSWAS
PAYAGADGPFPSHERRTWGTRVENWSAVQVTSHSSRYLEEEGRTRMRSIARDDLYVRKLS
PNLPTPGNAFDQFLPKCWIPEDVNWKRIKRETYKPWYKEFQGFSQFLLLQALQTYSDDVL
SSETHAKLDPTAGPRLITRRRNPSYALGYRRDDLEMTALDPDLENDDFFVRKMGAFHANP
CVLRAFEDFRRFSEHEDPIERDIILQCREGELVLPDLERDDMIIRRIPAQKKEVPLSGAP
DRYQPVPFPDPWTLPPEIQAKFLCMLERTSPSKEKSNSCRVLVPSYQQKKDDMLTRKIQS
WKLGTAVPPISFTPGPCSEADLRKWEAIREASRLRHRKRLMVERLFQKIYGENGSKSMSD
VSAEDVQHLRQLHYDEMQKIKSQLREQDQKWQDDLAKWKSRRKSYTSELQKKKEEREEIE
KLALETSEKSSKTFKEMQQDRESRNQTSTMTSRRRIYSSDDLLSEEVFPPSSTTSEASDQ
SGRVEEKGTASPVETPKQDPTTLAKTEDSITVEIQLPSKSSMEEQQEQQPVSLSSQQPVS
LSSQYSLSTQMESTRVSASFPRSYQKTDTARLTSVVTARPFGSHSRGITSLPRSYTLDDS
WKYNGDIDSSKRTQTSSGTMTRTLDPVPLAPSLSSVQETTVESVTQGPSPTSSLASLSQD
QPATSKATLSSMSGLDSMSESGEGPGSPQREVSKSQDQFSDMRISINQTPGNAFDFGFTV
RWDFSGIFVASVEPGSAAEFSQLQVDDEIIAVNNTKFSYKDKKEWEETMANAQETGNLVM
DIRRYGKSDWAKDQPSLPFTRHKTLNLTSMATNIIGSPETKWIDATSGIYSSDKSSSLSI
TTEFSESLRGSNIQSKEVNGICDESNSFETKASEPISLKNLKRRSQFFEQGSSGFSYSSW
VYLCGSTDSVVPDLPVPTISAPSRWAWDQEEERKRQERWQKEQERLLQEKYQREQEKLRE
EWQKAKQEAEQENSKYLNEELMVLNSSSMSLTVREPALATWEASWGEGSKSSDREGTRAG
EEESSPQPEESVSETLQEKLQEQLNLEKERKRKEEEQRLEEQELRQRQYEEELEQRQYQE
ELEQKQRQYQEELEQRQYQEELKQRQYQEELKQRQYREELEQKQRQYREELEQKQRQAEA
QKQRAEEQQRQAERERETSVKIYQYRRPADSYDIPKREEESSGLHPNDRNKSRSTTELDA
CPTNKNGSNRYLDRVGNTNSLQRTYKKEQFLSGAELERQQILQEMRKRTSLHNDNSWIRQ
RSSSVNKEPICLPGIMRRGESLDNLDSPRSHSWRQSTWHNQSGPVQAASSVQDLSRPLPH
LVSTSNRAYMRTPSSSVPLPSAGLARTSSTPSPTPRSQSPSVTQSGSQLRNRSVSGKRVC
SSCSSILGKGAAMIIESLGLCYHLHCFKCVSCHCDLGGSTSGAEVRIRNNELYCNDCYLR
FKTGRPTAM
NT seq
4530 nt
NT seq
+upstream
nt +downstream
nt
atgcaggattacaataaggatgatatgtcctatcgaaggacttcagtgattgagcccaag
tcagccttacccttcaatcgcttcttgcccaacaaaagtcgacagccatcctatgtgcca
gcgcccttgaggaagaaaataccggacaaaaatgaagataaccgaagaagctgggcaagc
ccggcctatgcaggagcagatggaccattcccaagtcacgagaggagaacttggggcacg
cgcgtggagaactggtcagcagtacaagtaacctcccactcctctcgctatttggaagag
gaaggaaggacacgcatgcgcagcatcgccagggatgatctttatgtgcgaaagctaagt
cccaacctgccgaccccagggaatgcttttgatcagtttcttcccaaatgttggattcca
gaagatgtgaactggaaaagaatcaaaagggaaacttataaaccatggtataaagaattt
cagggattcagtcagtttttattacttcaggccctccaaacatactcggatgacgtcttg
tcttctgaaacacatgccaaactggatcccactgcgggccccaggctcataacccgcaga
aggaatccctcttacgcattagggtacagaagagatgaccttgagatgacagccttggac
cccgacttagaaaacgatgatttctttgtcagaaagatgggggcttttcatgccaacccc
tgtgtcctacgggcttttgaagactttagaagattttctgagcatgaagatcctatagag
cgagatatcattttgcagtgtagagaaggggaacttgtccttcctgatttagaaagagat
gacatgatcatccgccggatccctgcgcagaagaaggaggtgcctctgtcgggggcacca
gatcgctaccaaccagttcccttccctgatccctggacacttcctccagaaattcaagca
aagtttctttgtatgctggagaggacaagtccatccaaagaaaagagtaatagttgtcgc
gtgctggttccttcctaccaacagaagaaagacgacatgttgacgcgtaagatccagtct
tggaagctgggaacggctgttcctcccatcagcttcacccctgggccctgcagtgaggcc
gacttgcgaaaatgggaggccatccgggaggccagcaggcttaggcacaggaaacggctg
atggttgagagactctttcaaaagatttatggtgaaaatgggagtaagtccatgagtgat
gtcagcgcagaggatgttcagcacctgcgtcagctgcattacgacgaaatgcagaaaata
aaatcacagttgagagaacaagatcagaaatggcaagatgaccttgccaaatggaaaagc
cgtcgcaagagctacacctcggaactgcagaagaaaaaagaagagcgggaagaaattgaa
aaactggctcttgagacatcagagaagagctctaagacttttaaggaaatgcaacaggac
agggaatctcgaaatcaaacatctacaatgacatcgaggaggagaatttactcttctgat
gatctgttaagtgaagaagtgtttcccccttcatcaaccacatcagaagcaagtgatcag
agtggcagagtggaagagaaaggaacggcatctcctgtagaaacccctaaacaagatcct
acaactttagcaaaaacagaggacagtatcacggttgaaattcagcttccttctaaaagc
tccatggaagaacagcaagaacagcagccggtctctttgtcttctcagcagcccgtctct
ttgtcttctcagtactccttgagcacacaaatggagtcgactcgagtttcagcttctttc
cccagaagttaccagaaaactgatactgccaggttaacatctgtggtcacagcgagacct
tttggctcacattcaagaggaatcacatcactcccaagatcctacacgctggatgattcc
tggaagtataatggagatatagacagcagtaagaggacgcagaccagttccggcaccatg
acgcggaccctggacccagtcccgcttgcacccagcttgtccagtgtgcaggagaccact
gtagagagtgtcacacaaggcccctctcctacctcttccttggcctctctttcccaggac
cagcctgccacttcaaaagccacattgtcttccatgtctggtcttgattccatgtccgag
tctggggaagggccaggctcccctcagagggaggtttcaaagtcacaggatcagttcagt
gatatgagaatcagcataaaccagacgcctgggaacgcttttgactttggctttacagta
agatgggatttttccggcatcttcgtagcatcagtcgaaccaggtagtgcagcagaattt
tctcagctacaggtagatgatgagattattgctgttaacaacaccaagttttcatataag
gacaaaaaagagtgggaggaaaccatggctaatgctcaagaaactggaaacctagtgatg
gatatcaggcgctatggaaagtctgactgggccaaagaccaaccttccctgccgtttaca
aggcataaaaccctcaatctcaccagtatggctacaaacattataggttcacctgaaaca
aagtggattgatgcaacttctggaatctacagctcagacaaatcttcaagtctatcaata
acgactgaattctcagaaagcctgcggggctctaatattcagtctaaagaagtcaatgga
atttgtgatgaaagcaatagttttgaaacaaaagcatctgaacctatttctttgaaaaac
ttaaaaagacgatcacaattttttgaacaagggtcatcgggcttttcttacagttcatgg
gtctacctctgtggaagtactgattctgtggttccggatctccctgttccaaccatcagt
gccccgagtcgctgggcctgggatcaagaggaggagcgaaagcgacaggagagatggcag
aaggagcaggagcggctgctgcaggagaaatatcagcgtgagcaggagaagctgagggaa
gagtggcaaaaggctaaacaagaggctgagcaagagaattccaagtatttgaatgaggaa
ctgatggttctaaactcaagcagcatgtctttgacggtgcgggagcccgccctggccacc
tgggaagccagttggggcgaagggtccaaatcttcagacagggaaggaacccgagcagga
gaagaggagagcagcccccagccagaggagagcgtgagcgagaccctccaagagaagctt
caggaacagctcaatctggagaaggagaggaaacggaaggaggaagagcagcgtctcgag
gagcaggagctgaggcagcgtcagtacgaggaggagctggagcagcgtcagtaccaagag
gagctggagcagaagcagcgtcagtaccaggaggagctggagcagcgtcagtaccaggag
gagctgaagcagcgtcagtaccaggaggagctgaagcagcgtcagtaccgagaggagctg
gagcagaagcagcgtcagtaccgagaggagctggagcagaagcagcgtcaggctgaggct
cagaagcagcgtgctgaggaacagcagcgccaagcagagagagaaagggaaacatcagtg
aaaatataccaataccgaaggcctgctgattcctatgatataccaaagagagaggaagaa
tcttcaggtttgcatcctaatgacaggaataaatctagatccactacagagttggatgct
tgtcccacaaataaaaatggaagcaatagatatttagaccgagtcgggaacaccaactcc
ttgcagagaacctacaagaaggaacaattcctatcaggagcagagctggaaagacaacaa
atccttcaagaaatgagaaagagaacctccctccacaatgacaacagctggatccgccag
cgcagttccagtgtaaataaagagcccatttgtctgcctgggattatgagaagaggtgaa
tctctagataacctggattctcccagatcccactcttggagacagtccacttggcacaat
cagtcagggcctgtccaagctgcttcctcggttcaagatctcagccggccgctgcctcat
ctggtatccacgtcgaaccgcgcctacatgcggacaccctcctccagcgtgccccttccc
tctgcgggcttggcaaggacttccagcactccgtcccccaccccacgcagccagtcccct
tcggtgacccagtcaggctcacaactgcgcaacaggtcagtgagtgggaagcgtgtgtgc
tcctcctgtagtagcattttgggcaaaggagcggccatgatcatcgagtccctggggctc
tgttatcatttacattgttttaagtgcgtgtcctgtcattgcgacctcggaggctctacc
tcaggagccgaagtccgaatccgaaacaatgagctgtactgcaacgactgctatctcaga
ttcaaaactggccggccaaccgccatgtga
DBGET
integrated database retrieval system
