Sorex fumeus (smoky shrew): 130019189
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Entry
130019189 CDS
T10594
Symbol
PCDH20
Name
(RefSeq) protocadherin-20
KO
K16498
protocadherin delta 1
Organism
sfum Sorex fumeus (smoky shrew)
Pathway
sfum03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
sfum00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
130019189 (PCDH20)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
sfum01009
]
130019189 (PCDH20)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
sfum04515
]
130019189 (PCDH20)
Protein phosphatases and associated proteins [BR:
sfum01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
130019189 (PCDH20)
Cell adhesion molecules [BR:
sfum04515
]
Cadherins
Protocadherins
130019189 (PCDH20)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_CELSR2_9th
He_PIG
Motif
Other DBs
NCBI-GeneID:
130019189
NCBI-ProteinID:
XP_055965777
LinkDB
All DBs
Position
Unknown
AA seq
953 aa
AA seq
DB search
MSGRGNARSSRALALSWRPATWHPRLDIMGRLNRPRSSTSPRNLQHLFLIFLFVGPFNCL
ASYSRATELLYSLNEGLPAGVLIGSLAQDLRLVPPAGGRNEPQWQSPERSSAELNPPLSF
SLASGGLSGQYVTLDNRSGELHTSTQEIDREALCLDGGAGAAGGGGISISSAPSPDSCLL
LLDVLVLPQEYFRFVKVKIAIRDINDNAPQFPVSQISVWVPENAPINTRLAIEHPATDPD
VGTNGVQTYRLLDYHRMFTLDVEENENGERTPYLIVMGLLDRETQDQYVSIIIAEDGGSP
PLLGSATLTIGISDINDNCPLFTESQINVTVYGNATVGTPIAAVQAVDIDLGINAQITYS
YSQKVPQASKDLFHLDETTGVITLYSKIGGSVLQTHKLTILANGPGCIPAVITALVTIIK
VIFRPPEIVPRYIANEIDGIVYLKELEPVNTPIAFFTIRDPEGKYKVNCYLDGEGPFKLS
PYKPYSNEYLLETTKPLDYELQQLYEVAVVAWNSEGFHVKKVLKVQLLDDNDNAPVFPQP
LIELTIEENNTPNAFLTKLYATDADSGERGQVSYFLGPDAPSYFSLDSATGILTVSTQLD
REEKEKYRYTVRAVDSGKPPRESVATVTLTVLDKNDNSPRFINKDFSFFVPENFPGYGEI
GIISVTDADAGRNGWVALSVVNQSDIFVIDTGKGMLRAKVSLDREQQSSYTLWVEAIDGG
EPALSSTAKITILLLDINDNPPLVLFPQSNMSYLLVLPSTLPGSPVTEVYAVDKDTGMNA
VIAYSIIGRRGPRPESFRIDPKTGNITLEEALLQTDYGLHRLLVKVSDHGYPEPLHSTVM
VNLFVNETVSNESYIESLLRKEPDISIEEKEPQISIEPTHRKVESVSCMPTLVALSVISL
GSITLITAMGIYICLRRGNKYPREDENLEVQIPLKGKIDLHMRERKPMDISNI
NT seq
2862 nt
NT seq
+upstream
nt +downstream
nt
atgagcggccgagggaatgcgcgcagctcgcgggccttggcactgagctggcgtccggcg
acttggcacccgcgcctggatattatggggcgtctcaatcgtcccaggagcagcaccagc
cccaggaacctacagcatctgtttctgatcttcctcttcgtgggacccttcaactgcctc
gcgagctacagtcgggccacggagctcctgtacagcctgaacgagggactccccgcgggg
gtgctcattggcagcttggcccaggacctgcggctggtgcccccggccggcgggaggaat
gagccgcaatggcagtcgccggagcgctccagcgcggagctgaacccccctctctccttc
agcctggcctccgggggactgagtggccagtacgtaaccctggacaaccgctccggggaa
ctgcacacttccacccaggagatcgaccgagaggccctgtgtctggatggaggtgcaggc
gccgcggggggcggcggcatttccatttcctctgcgccttccccagactcttgtcttttg
cttctggatgtgctggtcctgcctcaggaatacttcaggtttgtcaaggtgaaaatcgct
atccgagacatcaatgacaatgccccgcagttccctgtgtcccaaatctccgtgtgggtc
ccagaaaacgcacctataaacacccgtctggccatcgagcatcctgccacggacccagat
gtaggcactaacggggtacagacctatcgcctcctggactaccaccgcatgttcacccta
gacgtggaagagaatgagaatggagagcgcaccccctacctaatcgtcatgggtctattg
gacagggagactcaggaccagtacgtgagcatcatcatagccgaggacggcggctctcca
cctctgttgggcagcgccacgctcaccattggcattagtgacattaatgacaattgccct
ctctttacagaatcacaaatcaatgtcactgtgtatggaaatgctactgtgggcacaccg
attgcagctgtgcaggctgtggatatagacttgggaatcaatgctcagataacttactct
tacagccagaaagttccccaggcatccaaggatttattccacctggatgaaaccaccgga
gtcattacactttatagtaagattgggggaagtgttctgcaaacacacaagctcaccatt
cttgctaatgggcctggctgcatccctgctgtgatcacggccctcgtgaccatcatcaaa
gtcattttcagaccacctgaaatcgttcctcgttatatagcaaatgagatagatggcatt
gtttacctgaaagaactggaacctgtgaacacccccattgcgttcttcaccattcgggat
ccagaaggcaaatacaaggtgaactgctacctggatggtgaggggccgtttaagttatcc
ccctacaaaccatacagtaatgaatacttgctggaaaccacgaaacctttggactacgag
ctccagcagttgtatgaagtagctgtggtggcctggaattctgagggatttcatgtcaaa
aaagttcttaaagtgcaactcttagatgacaatgacaatgctcccgtttttcctcagccc
ttaattgaactcaccattgaagaaaacaacacccccaatgcctttttgactaaactgtac
gctacagatgctgatagcggagagagaggccaggtttcttattttctgggacccgatgct
ccttcatatttttccttagacagtgccacaggcatcctaactgtttcaactcagctggac
cgagaagagaaagaaaagtacagatatacagtcagagctgttgactctgggaagccaccc
agggaatctgtagctacagtgactctcacagtattggataaaaacgacaatagccctagg
tttatcaacaaggacttcagcttttttgtgccagaaaacttccccgggtatggtgaaatt
ggcataattagtgtaacagatgctgatgccggtcgaaatggatgggtggccctctcagtg
gtaaaccagagtgatatttttgtcatagacacaggcaagggcatgttgagagccaaagtc
tctttggacagagaacaacaaagttcctatactttatgggttgaggctattgatggaggt
gagcctgcactttcctccactgcaaaaatcaccattctccttcttgatatcaatgacaac
ccacctctggttttatttcctcagtctaacatgtcctacctgctggtactaccttcgact
ctcccaggctccccagtgacagaggtctatgccgttgacaaagacacaggaatgaatgct
gttatagcttacagcatcataggaagacgaggcccgagacctgaatcttttaggattgac
cctaaaactggcaatattactttggaagaggcattgctgcagacggactatggtctccac
cgtttgctggtgaaagtgagtgaccatggttatcctgaacctctccactccacagtcatg
gtgaacttatttgtaaatgaaactgtcagtaatgagagctacattgagagtcttttaaga
aaggagccggacataagtatagaggaaaaagaaccacagatctccatagaaccgactcat
aggaaggtggaatctgtctcctgtatgcctaccttagtagctctgtctgtaataagcttg
ggttcgatcacactgatcacagcgatgggcatctacatctgtttaaggagagggaataag
tatcccagggaagatgaaaatttggaagtacaaattccactgaaaggaaaaattgacttg
catatgagagagaggaaaccgatggatatttctaatatttga
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