Sorex fumeus (smoky shrew): 130019419
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Entry
130019419 CDS
T10594
Symbol
PCDH9
Name
(RefSeq) protocadherin-9 isoform X1
KO
K16498
protocadherin delta 1
Organism
sfum Sorex fumeus (smoky shrew)
Pathway
sfum03273
Virion - Lassa virus and SFTS virus
Brite
Protein phosphatases and associated proteins [BR:
sfum01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
130019419 (PCDH9)
Cell adhesion molecules [BR:
sfum04515
]
Cadherins
Protocadherins
130019419 (PCDH9)
BRITE hierarchy
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Ortholog
Paralog
GFIT
Other DBs
NCBI-GeneID:
130019419
NCBI-ProteinID:
XP_055966042
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Position
Unknown
AA seq
1264 aa
AA seq
DB search
MDLRDFYLLAALIACLRLDSAIAQELIYTIREELPENVPIGNIPKDLNISHINAATGTSA
SLVYRLVSKAGDAPLVKVSSSTGEIFTTSNRIDREKLCAGASYAEENECFFELEVVILPN
DFFRLIKIKIIVKDTNDNAPMFPSPVINISIPENTLINSRFPIPSATDPDTGFNGVQHYE
LLNGQSVFGLDIVETPEGEKWPQLIVQQNLDREQKDTYVMKIKVEDGGTPQKSSTAILQV
TVSDVNDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPATK
RLFALNNTTGLITVQRSLDREETAIHKVTVLASDGSSTPARATVTINVTDVNDNPPNIDL
RYIISPINGTVYLSEKDPVNTKIALITVSDKDTDVNGKVICFIEREVPFHLKAVYDNQYL
LETSSLLDYEGTKEFSFKIVASDSGKPSLNQTALVRVKLEDENDNPPIFSQPVIELSVSE
NNRRGLYLTTISATDEDSGKNADIVYQLGPNASFFDLDRKTGVLTASRVFDREEQERFIF
TVTARDNGTPPLQSQAAVIVTVLDENDNSPKFTHNHFQFFVSENLPKYSTVGVITVTDAD
AGENKAVTLSILNDNDNFVLDPYSGVIKSNVSFDREQQSSYTFDVKATDGGQPPRSSTAK
VTINVMDVNDNSPVVISPPSNTSFKLVPLSAIPGSVVAEVFAVDVDTGMNAELKYTIVSG
NNKGLFRIDPVTGNITLEEKPAPTDVGLHRLVVNISDLGYPKSLHTLVLVFLYVNDTAGN
ASYIYDLIRRTMETPLDRNIGDSSQPYQNEDYLTIMIAIVAGAMVVIVVIFVTVLVRCRH
ASRFKAAQRSKQGAEWMSPNQENKQNKKKKRKKRKSPKSSLLNFVTIEESKPDDAVHEPI
NGTISLPAELEEQSIGRFDWGPAPPTTFKPNSPDLAKHYKSASPQPAFHLKPDTPVSVKK
HHVIQELPLDNTFVGGCDTLSKRFSTSSDHFSASECSSQGGFKTKGPLHTRQWSLLAMLG
PQYCWGEDMQYQRLNLGPQCNSHSKSDNIPVTPQKCPSSAGFHIQENEESHYESQRRVTF
HLPDGSQESCSDSGLGDHEPVGSGTLISHPLPLVQPQDEFYDQASPDKRTEADGNSDPNS
DGPLGPRGLAEATEMCTQECLVLGHSDNCWMPPGLGPYQHPKSPLSTFAPQKEWIKKDKL
VNGHTLTRAWKEDSNKNQFNDHKQYGSNEGHFNTGSHMTDIPLANLKSYKQTGGAIESPK
EHQL
NT seq
3795 nt
NT seq
+upstream
nt +downstream
nt
atggacctgagggatttttacctgttggctgctctgattgcctgtttaaggctggattct
gcaatagctcaagaacttatttacactattagagaggaattgcctgagaatgtgcccata
ggaaacataccaaaggatctgaacatttctcacatcaatgctgccacagggaccagtgcc
agtcttgtctatagactggtttctaaagcaggggatgcccctttggtgaaagtatccagt
agcacgggggaaattttcacaacctccaatagaatagacagagaaaaactctgtgctgga
gcctcttacgctgaggagaatgagtgtttctttgaacttgaggtggtgatcctccccaat
gattttttcaggctgatcaaaataaaaataatcgtcaaggataccaatgacaatgcaccc
atgtttccatcccctgtcatcaatatctccatcccagaaaacactttgatcaacagccgc
tttccaatcccatcagcaacagatcctgacacgggcttcaatggggtacagcattatgaa
ttgttaaatgggcagagtgtttttggactggatattgtggaaactccagagggagagaag
tggccgcaattgattgttcagcaaaacttggacagagagcagaaagatacctatgtgatg
aaaatcaaagtcgaggacggaggcacgccacaaaaatccagcacagccatactgcaggtc
acagtaagtgacgttaatgacaacagaccagtgtttaaagagggtcaagtggaagtgcat
attccagagaatgccccggtgggcacctctgtaattcagctccatgccactgatgcagat
ataggcagtaatgctgaaatccggtacatttttggtgcccaggtcgctcctgcaaccaaa
agactctttgctttaaataatactacggggctgattacagttcagaggtccttagacaga
gaggagacagccattcacaaagtgacagtgctggctagtgatggcagctccactcctgcc
cgagcaacggttaccatcaatgtcactgatgtaaatgataaccctcctaacatagacctc
aggtacattataagtcccatcaatggcaccgtgtatttgtctgagaaagatcctgtcaat
acaaagattgccctaattacagtttcagataaggacacagatgtgaatggcaaagtgatc
tgtttcattgagagagaggtcccatttcatttgaaggcagtctatgacaaccagtatttg
ttagagacttcctcgttgttggactatgagggcaccaaagaattcagctttaaaattgtt
gcctccgattctgggaagcccagtttaaatcagactgccctggtaagggttaagcttgag
gacgaaaatgacaacccaccaattttcagccagcctgtaattgagctgtcagtttcagaa
aacaatcgacgtggcttatacttaacaactattagtgccacagatgaggacagtgggaaa
aatgcagatattgtttatcagcttggaccgaatgcctccttttttgatctggaccgaaag
acaggagttttgacagcctccagagtctttgacagagaagaacaagagcgattcattttt
acagtaactgccagggacaatgggacccctcccctgcaaagtcaggcggctgtgatagtt
actgttctggacgagaatgacaatagccccaagtttactcataaccattttcagtttttt
gtgtctgagaatctgccaaagtatagtactgtgggggttatcacagtgacagatgcagat
gctggggagaataaagctgtgactctttccattctaaatgacaatgataattttgtcttg
gatccctattctggagtcataaagtcaaatgtctcctttgatagagaacagcagagttcc
tacacttttgatgtcaaagccactgatggaggccagccaccccgatcctctactgcaaaa
gtcactatcaatgtcatggatgtcaatgacaacagtccagttgtcatttccccaccttct
aatacatctttcaagttggtgcccctatcagccatccctggctctgtggtagcagaagtt
ttcgcagtggatgtcgacactgggatgaatgctgaactgaagtataccatcgtcagcggg
aacaacaaaggtttgtttcgcatagatccagtaacaggtaatattactctggaggagaaa
ccagcacccaccgatgtaggcttgcaccgtttggtggtcaacataagtgacctcgggtac
ccaaagtctttgcacacacttgtgcttgtttttctctatgtcaatgacactgctggaaat
gcctcctatatctacgacttgattcgcaggactatggaaacccccttggacaggaacata
ggggacagtagccaaccctaccaaaatgaggactatctcaccatcatgattgccatcgtg
gcaggtgccatggtggtcatagtggtgatctttgtgactgtcctggtgcgctgtcgccat
gcatctagattcaaagctgctcagaggagcaagcagggtgctgagtggatgtcaccaaat
caggagaacaaacaaaacaagaaaaagaaaaggaagaaaagaaagtctcccaagagctct
cttctgaactttgttacaattgaagaatccaaaccggatgatgcagttcatgaacctatc
aatgggacaatcagcctcccggctgagctggaggagcaaagtataggaagatttgactgg
ggtcccgcacctcccacaaccttcaagcccaacagtcctgacctggccaagcactacaaa
tctgcttctccgcagcctgcttttcatcttaaaccagacactccagtttctgtgaaaaag
catcatgtgattcaggagctccctttggacaacacctttgtcgggggttgtgacaccctt
tccaaacgtttttccactagttcagatcacttcagtgcctcagagtgcagttcccaagga
ggcttcaagacaaagggccccttacacaccagacagtggtcactactggcaatgcttggc
ccacaatactgctggggagaggacatgcagtaccagagattgaatttagggcctcagtgt
aactcacacagcaaaagtgacaatattcctgtcactcctcagaaatgtcccagctctgcg
ggtttccacattcaggagaatgaagaaagccattacgagtcgcagcgccgcgttacgttc
cacctccctgatggctcccaagaaagctgcagtgacagtggtctaggagaccacgagccg
gtgggtagtggaaccctgatctcacaccctcttcctctggttcagccacaggacgaattc
tatgaccaggcctctccggacaagaggaccgaagcagacggaaactctgaccccaactct
gatggtcctttggggcccagaggattagctgaagctacagaaatgtgtactcaagagtgc
ttggttttgggtcattctgataattgctggatgcctcctggcttgggtccatatcagcat
cctaaatcacctctgtcgacctttgcaccccagaaagaatggatcaagaaggacaagctg
gtgaatgggcataccctaaccagggcctggaaagaagatagcaacaagaaccaattcaat
gaccataagcagtatggctccaatgaaggccatttcaacactggaagccacatgacagac
attcctctggcaaacctgaagtcttataagcaaacaggaggtgctattgagagccctaag
gagcaccagctctaa
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