Sorex fumeus (smoky shrew): 130019667
Help
Entry
130019667 CDS
T10594
Symbol
SCN9A
Name
(RefSeq) sodium channel protein type 9 subunit alpha isoform X1
KO
K04841
voltage-gated sodium channel type IX alpha
Organism
sfum Sorex fumeus (smoky shrew)
Pathway
sfum04742
Taste transduction
Brite
KEGG Orthology (KO) [BR:
sfum00001
]
09150 Organismal Systems
09157 Sensory system
04742 Taste transduction
130019667 (SCN9A)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
sfum04040
]
130019667 (SCN9A)
Ion channels [BR:
sfum04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
130019667 (SCN9A)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
Na_trans_cytopl
IQ_SCN5A_C
PKD_channel
GPHH
IQ
ATP-synt_B
Lustrin_cystein
FUT8_N_cat
Motif
Other DBs
NCBI-GeneID:
130019667
NCBI-ProteinID:
XP_055966216
LinkDB
All DBs
Position
Unknown
AA seq
1982 aa
AA seq
DB search
MAMLPPPGPHSFVHFTKQSLALIEQRIAEGKAKEPKEEKKDDEEEGPKPSSDLEAGKQLP
FIYGDIPPGLVSEPLEDLDPYYADKKTFIVLNKGKAIFRFNATPALYMLSPFSTLRRLSI
KILVHSLFSMLIMCTILTNCIFMTMYNPPDWTKNVEYTFTGIYTFESLVKILARGFCVGE
FTFLRDPWNWLDFVVIVFAYLTEFVSLGNLSALRTFRVLRALKTISVIPGLKTIVGALIQ
SVKKLSDVMILTVFCLSVFALIGLQLFMGNLKYKCVRDPLENNETIESIMRNTSEEELKK
YIYYLEGSKDALLCGLSTDSGQCPEGYKCTKVGRNPDYGYTSFDTFSWAFLALFRLMTQD
YWENLYQQTLRAAGKTYMIFFVVVIFLGSFYLINLILAVVAMAYEEQNQANLEEAKQKKL
EFDQVLEHLKKEQEEAEALVLAAAEYTSIGRSRLTGLSESSSETSKLSSKSAKERRNRRK
KKNQKKLSSGEEKGDNEKLSKSESEESIRRKSFHLGIEGHRRPHEKRLSTPNQSPLSIRG
SLLSARRSSRTSLFSFKGRGSETEFADDEHSIFGDIESRRGSLFVPHRPRERRSSNISQA
SRSPPMLPVNGKMHSAVDCNGVVSLVDGPSALMLPNGQLLPEVIIDKATSDDSGTTNQIH
KKRRSSSFIFSEDMLNDPHLRQRAMSRASILTNTVEELEESRQKCPPWWYRFAHTFLIWN
CSPHWIKFKKLIHIIVMDPFVDLAITICIVLNTLFMAMEHHPMTEEFKTVLTVGNLVFTG
IFTAEMVLKLIAMDPYEYFQVGWNIFDSIIVTLSLVELFLSNVEGLSVLRSFRLLRVFKL
AKSWPTLNMLIKIIGNSVGALGNLTLVLAIIVFIFAVVGMQLFGKNYKECVCKINEDCTL
PRWHMNDFFHSFLIVFRVLCGEWIETMWDCMEVAGQAMCLIVFMMVMVIGNLVVLNLFLA
LLLSSFSSDNLTVVEEDTDANNLQIAVARIKKGINYVKQTLREFILKAFSKKPKISKDNK
SKDQNSLKENSISNRTLAEMNKDYNFYKEKDKMSGFESSMDKYFMEESDCQSFIHNPSLT
VTVPIAPGESDLENINTEELSSDSDSYYSKGRPNQSSSSECSTVDNPLPREGEEAEAEPV
NTDEPEACFTDGCVRRFPCCQVNIESGKGRIWWNIRKTCYRIVEHSWFESFIVLMILLSS
GALAFEDIYIEKKKTIKTVLEYADKIFTYIFILEMLLKWIAYGYKTYFTNAWCWLDFLIV
DVSLVTLVASTLGYSDLGPIKSLRTLRALRPLRALSRFEGMRVVVNALIGAIPSIMNVLL
VCLIFWLIFSIMGVNLFAGKFYECVNTTDGSRFSTEQVQNRSDCFALINVSQNVRWKNLK
VNFDNVGLGYLSLLQVATFKGWMDIMYAAVDSVNVDKQPIYEHSLYMYLYFVIFIIFGSF
FTLNLFIGVIIDNFNQQKKKLGGQDIFMTEEQKKYYNAMKKLGSKKPQKPIPRPGNKVQG
CIFDLVTNQVFDITIMVLICLNMVTMMVEKEGQSEEMTNVLYWINLVFIILFTGEFVLKL
ISLRHYYFTIGWNIFDFVVVILSIVGMFLADIIEKYFVSPTLFRVIRLARIGRILRLIKG
AKGIRTLLFALMMSLPALFNIGLLLFLVMFIYAIFGMSNFAYVKKEAGINDMFNFETFGN
SMICLFQITTSAGWDGLLAPILNSGPPDCDPKKYHPGSSVEGDCGNPSVGIFYFVSYIII
SFLVVVNMYIAVILENFGVATEESTEPLSEDDFEMFYEVWEKFDPDATQFIEYSKLSDFA
AALDPPLLIEKPNKVQLIAMDLPMVSGDRIHCLDILFAFTKRVLGEGGEMDSMRAQMEER
FMSANPSKVSYEPITTTLKRKQEDVSATVIQRAYRRYRLRKNVKNISSIYIKDVERDDDL
PNKEDIVFDNVNENSSPEKTDATPSTTSPPSYDSVTKPDKEKYETDKTEKEDKDKDGKES
EK
NT seq
5949 nt
NT seq
+upstream
nt +downstream
nt
atggcaatgttgcctcccccaggacctcacagctttgtccacttcacaaaacagtctctt
gcacttattgaacagcgtattgctgaaggaaaagcaaaagaacctaaggaagaaaagaaa
gatgatgaagaagaaggtccaaagccaagcagtgacttggaagctggcaaacagctgccc
ttcatctatggggacatccctccaggcttggtctcagagcccctggaggacttggacccc
tactatgctgacaaaaaaactttcatagtcttgaataaagggaaagcaatatttcgcttc
aatgccacacctgctttgtacatgctctctcctttcagtactctaagaagactgtctatt
aagattttagtacactccttattcagcatgcttatcatgtgtactattctcacaaactgc
atatttatgacaatgtataaccctccagattggacaaagaatgtagagtacacttttact
ggaatatatacttttgaatcacttgtaaaaatccttgcaagaggcttttgcgtaggagaa
tttactttccttcgtgacccatggaactggcttgattttgtcgtcattgtgtttgcgtat
ttaacagaatttgtaagcctaggcaatctttcagctcttcgaactttcagagtgttgaga
gctttgaaaactatttctgtaattccaggtctgaagaccatcgtgggggccctgatccag
tcagtgaagaaactctcagatgtcatgatcctgaccgtgttctgtctgagcgtgtttgcg
ctgattgggctgcagctcttcatgggcaacctgaagtataaatgtgtgagggacccactt
gaaaataatgaaacgatcgagagtataatgcggaatacaagtgaagaagaattgaaaaaa
tatatttattacttggaaggatccaaagatgctcttctttgtggtctcagcacagattca
ggtcagtgtccagaaggatacaaatgtaccaaagttggcagaaatcctgattatggctac
acaagctttgacactttcagttgggccttcttagccttgtttcgccttatgactcaggat
tattgggagaatctttaccaacaaacactccgtgctgctgggaaaacctacatgatcttc
tttgtggtggtgattttccttggctccttttatctgataaacttaatcctggctgtagtt
gccatggcctatgaagagcagaaccaagcaaaccttgaagaagctaagcagaagaagttg
gaatttgaccaagtgttagaacaccttaagaaagagcaagaagaagctgaggcactggtg
ctggcagccgctgagtacacaagcatcggcagaagcagactgacgggcctctctgagagt
tcctcagaaacatccaagctgagctcaaaaagtgctaaagaaagaagaaacagaagaaag
aaaaagaatcaaaagaagctctccagtggggaagaaaagggagacaatgagaagttgtct
aaatcggaatcagaggagagtatccggagaaagagcttccacctcgggattgaagggcac
aggcggccacatgagaagagactgtcaaccccgaaccagtcaccactcagcatacgtggc
tccttgctttctgcaaggcgtagcagcagaacaagtctctttagtttcaaaggtcgagga
tctgagactgaatttgcggacgatgaacacagcatttttggagacattgagagcagaagg
ggctcactttttgtgccccacagacctcgggagcggcgcagcagtaacatcagccaagcc
agtaggtcccccccaatgctgccggtgaacgggaagatgcacagtgccgtggactgcaat
ggtgtcgtctccctggttgatggaccgtcagccctcatgctccccaatggacagcttctg
ccagaggtgataatagataaggcaacttctgatgacagcggcacaacaaatcaaatacac
aagaaaagacgttctagttctttcattttttctgaggatatgttgaatgatcctcatctc
agacaaagagcaatgagtagagcaagcatattaacaaacactgtagaagaacttgaagag
tccagacaaaaatgtcctccttggtggtacagatttgcacacacatttttgatctggaat
tgctctccacattggataaaattcaaaaagcttatccatattattgtaatggatcctttt
gtggatcttgctattaccatttgcatagttttaaacacattgtttatggctatggaacat
cacccaatgaccgaagaatttaaaaccgtgctcactgtgggaaatttggtctttactggg
atctttacagctgaaatggtcttaaaactaattgccatggatccatatgagtatttccaa
gtaggatggaatatttttgacagcattattgtgactttaagtttagtagaacttttttta
tcaaatgtggaaggattgtcagttctgcgttcattcagactgctccgagttttcaaattg
gcaaaatcttggccaactctgaacatgctgataaaaattattggcaactcagtaggagct
ctgggaaacctcaccttggtgttggccatcattgtcttcatttttgctgtggtgggcatg
cagctctttggtaagaactacaaggaatgtgtctgcaagatcaatgaagattgcacgctc
ccacgctggcacatgaatgactttttccattccttcctgattgtgttccgtgtactgtgt
ggagagtggatagagaccatgtgggactgtatggaggttgccggtcaagccatgtgcctt
attgttttcatgatggtcatggtcattggaaacctagtggtactgaatctatttctggct
ttattattgagctcatttagttccgacaatcttacagtagtcgaagaagatactgatgca
aacaacctccaaatagcagtggccagaataaagaagggaataaattatgtgaaacaaact
ttacgtgaatttattctaaaagcattttccaaaaagccaaagatttccaaagataacaaa
tcaaaagatcaaaatagtttgaaggaaaactctatctctaatcgcacacttgctgaaatg
aacaaagattacaatttctacaaggaaaaagataaaatgagtggttttgaaagcagcatg
gacaaatattttatggaagaaagtgattgtcagtcatttattcataatcccagcctcaca
gtcacagtaccaattgcacccggagaatctgatctggaaaatataaatactgaggaactt
agcagtgattccgatagttattacagcaaagggagacccaaccaatcaagttcctcggaa
tgtagcacggttgataatcctctgccaagagaaggagaagaagcagaggctgaacctgta
aatacagatgaaccagaggcctgttttacagatggttgtgtaaggaggttcccatgctgc
caagttaacatagaatcagggaaaggaagaatctggtggaacatcagaaaaacctgctac
agaatagttgaacacagttggtttgaaagtttcattgttctcatgatcctgctcagcagt
ggtgctctggcttttgaagatatatatattgaaaagaaaaaaaccattaagactgtcttg
gagtatgctgacaagatattcacttacatatttattctggaaatgcttctgaaatggata
gcatatggttacaaaacatacttcaccaatgcctggtgttggctggatttcctgattgtt
gatgtttccttggttactttagttgcaagtactcttggctattcagatcttggccccatt
aaatcccttcggacactgagagctttaaggcctctaagagctttatctagatttgaagga
atgagggtggttgtgaatgcactcataggtgcaattccttccatcatgaatgtgctgctt
gtgtgtcttatattctggctaatatttagcatcatgggagtgaatttgtttgctggaaag
ttctatgagtgcgtgaacaccacagatgggtcacggttctctacagagcaagttcaaaat
cgttctgactgttttgcgcttataaatgttagtcaaaatgttcgatggaaaaacttaaaa
gtgaacttcgataatgttggactgggctacctgtctctgctacaagttgctacatttaag
ggatggatggatattatgtatgcagcagttgattctgttaatgtagacaagcagcccatt
tatgaacacagcctctacatgtatctttattttgtcatctttatcatctttgggtcattc
ttcactttgaacttgttcattggtgtcatcatagataattttaatcaacagaaaaagaag
cttggaggtcaagacatctttatgacagaagaacaaaagaagtattacaatgcaatgaaa
aagcttggatctaaaaaaccacaaaaaccaatacctcggccagggaacaaagtccaagga
tgtatatttgatctagtaacaaaccaagtttttgatatcaccataatggttcttatttgc
ctcaacatggtaaccatgatggtagaaaaagaaggacaaagtgaagaaatgactaatgtt
ttatattggataaatttagtttttattattcttttcactggtgaatttgtgctgaagttg
atctccctcagacactactacttcactataggatggaacatttttgattttgtggttgtg
attctctccattgtaggtatgtttctagctgacataatagagaagtactttgtatctcct
accctattccgagtcatccgtctggccaggattggtcgaatcttgcgtctcatcaaaggg
gccaaggggatccgcactctgctctttgctctgatgatgtccctccctgccttgtttaac
atcggcctcctgctctttctggtcatgttcatctacgccatctttggaatgtccaacttt
gcctacgttaaaaaggaagctggaattaatgacatgttcaactttgaaacctttggcaac
agcatgatttgcctgtttcagattaccacctcggctggctgggatggattgttagcccct
attctcaacagtgggccaccggattgtgatcccaaaaagtatcatccaggaagttcagtt
gaaggagactgtgggaacccatctgttggtatattctattttgtcagttatatcatcata
tcatttctggttgtagtgaacatgtacattgctgttatcctggagaacttcggtgttgct
actgaagaaagtactgaacccctgagtgaagatgactttgagatgttctatgaggtttgg
gagaagtttgatccggatgccacccagtttattgaatatagcaaactctctgattttgca
gctgccctggatcctcctcttctcatagaaaagccaaacaaagtccagctcattgccatg
gatctacccatggtcagtggagatagaatccattgtcttgacattttatttgcttttaca
aagcgtgttttgggtgaaggtggagaaatggattctatgcgtgcacagatggaggaaagg
ttcatgtctgcaaatccttccaaagtgtcctatgaacccatcacaacgacactaaaacga
aagcaagaggacgtgtctgccactgtcattcaacgagcttatagacgttaccgcttacga
aaaaatgttaaaaatatatcaagtatatacataaaagatgtagaaagagatgatgatttg
cccaataaagaagatatagtttttgataatgttaatgagaattcaagtccagaaaaaaca
gatgctaccccatctaccacctctccaccttcatacgatagtgtaacaaagccagacaaa
gagaaatatgaaacagacaagacagaaaaagaagacaaagataaagatggcaaggaaagc
gaaaaatag
DBGET
integrated database retrieval system
