Sorex fumeus (smoky shrew): 130020430
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Entry
130020430 CDS
T10594
Name
(RefSeq) LOW QUALITY PROTEIN: exosome component 10-like
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
sfum Sorex fumeus (smoky shrew)
Pathway
sfum03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sfum00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
130020430
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sfum03019
]
130020430
Messenger RNA biogenesis [BR:
sfum03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
130020430
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol_A_exo1
PMC2NT
HRDC
Motif
Other DBs
NCBI-GeneID:
130020430
NCBI-ProteinID:
XP_055967017
LinkDB
All DBs
Position
Unknown
AA seq
921 aa
AA seq
DB search
MAPPSSQXHKGSSAASVPQPEEEMVLPGFPDIDSVMKFALRSVEAVIKASGSLPQSGPEY
DFYQSFPGFQALCETQGDRMIECMSRMMQYYVCQSDIKDCRKVTDLEDKFDLLVDADDAI
LDGVDILLDEASGMKKHQQPVLPIGSQARQMIMSSWNRKVGESGKKTKSEPFRLLHVKNI
IPQQLKFREKIDNSNTPFVPKIFIKPNTLKPLPRALSKESREHTKNQSEYQDVPPGLVHF
LHQQRTQQVEQDVFAHPYQYELDHFTPPEWALQKPQPQAYKPLQDTACHLVTSLDQLVQL
NATLLACWEFAVDLEHHFYRSFLGLTCLMQISTRTEDFIIDTLELRSDMHLLNESFTDPA
IVKVFHGANSDIEWLQKDFGLYVVNMFDTQQAARLLRLGRHSLDHLLKRYCNVQANKQYQ
LADRRMRPLPEEMLHYAREDTHYLLYIYDCMRLELWAAASEQPSKARVVWQRSRDICLRK
FAKPLFTDESYLKLYEKLKTPLNAQQLTAFRLLFAWRDNLARREDESCCYVLPNRMMLKI
SEELPEEPQGIIACCTPVPPLVWQQLNELHLLIQKARGTPLCQSEVATGVRRRALLPHPE
SLESVLVGPQEHSHACSGDCPAIPTNGSVPDQTQAGLFPAQHEEKTLVATSRFVATAADT
LFNEASAEQKNKAQKKVQPVVQSLENPFGMLLQALQHNAHISQAAKADPSSSINEISERC
ELASQVQGQKDSKDTARKRAAQETAAEDEAKEGSQTPAQPALSLSQQIALENAAKKREPT
SDPRAPEQKLEMKWSKLAEKPKDPREAREKASTSFDYRKPNVQAFAGNSKSQPASQFDPG
KQIVAGKKCFAAKELKQIAGNKSMSFVPRDLDRGFRCNWPRRPCPPDFLVLPGTGRQRPW
EGFVYHPNFNTVRNNCYWEKE
NT seq
2766 nt
NT seq
+upstream
nt +downstream
nt
atggcacctccgagttcccagngccacaagggctcatcagctgcaagcgttccacagcct
gaggaggagatggtgctgcctggcttcccggacatcgacagcgtcatgaagtttgctctc
aggtcagtggaggcagtcattaaggcatctgggagcctgccacagtctggcccagaatat
gatttttaccaaagttttcctggcttccaagcattgtgtgagactcaaggagacaggatg
attgagtgcatgagcagaatgatgcagtactacgtgtgtcagagcgacatcaaggactgc
aggaaagtgacggacttggaagacaaatttgatttattggttgacgccgatgacgctatt
ctggatggagtggacattttactggatgaagcttcaggcatgaagaagcatcagcagccc
gtcctccccataggatcacaagcccgccaaatgatcatgtccagctggaaccggaaggta
ggagaatcgggcaaaaaaacaaaatcggaacccttccggctgcttcacgtgaagaacatc
atcccacagcagcttaaattccgagagaagatcgacaattccaacaccccatttgttccg
aagatcttcatcaagcccaacaccctgaaacctctccctcgggcgctgtctaaggagagt
cgggagcacaccaagaaccaatcagagtaccaggatgtgccaccgggcctggtccacttc
ctccaccagcagcggacccagcaggtagagcaggacgtgttcgcacacccctatcagtac
gaactggatcactttacgcccccagagtgggcgcttcagaaaccgcagccccaagcctac
aagcccctgcaggacacggcctgccacttggtgacctcgctggaccaactcgtgcaactc
aacgcgacgctcctggcctgttgggaatttgcggtggacttggagcatcacttttaccgc
agcttcctgggcctgacctgcctgatgcagatttccacgcgcaccgaagacttcatcatc
gacacgctggagctgcgcagcgacatgcacctcctcaacgagagcttcacagaccctgcc
atcgtgaaggtcttccacggcgctaactccgacatagaatggctgcagaaggacttcggg
ctgtacgtggtgaacatgttcgacacgcagcaggcagcgcgccttcttcgtctgggccgg
cactccctggaccacttgctgaaacgctactgcaacgtgcaggcgaacaagcagtatcag
ctggccgacaggaggatgcgccctttgccagaggaaatgctccactatgcccgcgaggac
acccactacctgctctacatctacgactgcatgaggctggagctgtgggctgctgccagc
gagcagccctcgaaggcccgggtggtgtggcagcgcagtagggacatctgcctccggaag
ttcgccaaacccctcttcacggatgagtcctacctgaagctgtatgaaaagctgaagacg
cctcttaatgcacagcagctgacagccttccggctgctgttcgcctggagggataacctg
gcaaggagggaggatgagagttgctgctatgtcttgcccaaccgcatgatgctgaagatc
tcagaagagctgccagaggagccccagggcatcattgcttgctgcacccccgtcccgcct
ctggtatggcaacaactaaacgagctgcatcttctcatccagaaggcgcgaggaacccct
ctgtgccagtcggaagttgccaccggggtgaggaggagagcactgctgccccatcctgag
agcctggaaagtgttctcgttggacctcaagaacactcccacgcttgttcgggtgactgc
cctgccatacccaccaatgggtccgtcccggaccagacgcaggctggcctcttcccagcc
cagcacgaagagaagaccctggtggccaccagccgcttcgttgccacggccgcggacacc
ttgtttaacgaggcaagtgcagagcaaaagaacaaagcccagaagaaagtccagccagtg
gtgcagtccttggagaacccattcgggatgcttttgcaggcgctccaacacaacgcccac
atttcccaggcagccaaggccgacccttcctccagcatcaatgaaatcagcgagcgctgt
gagctggccagccaggtgcagggacagaaggactctaaggacaccgccaggaagagggca
gcccaggaaacagcagctgaagacgaggccaaggaagggtctcagacccccgcccagccg
gctctgtcgctcagccagcagatcgccctggaaaacgctgccaagaagagagagccaaca
agtgaccccagagcccctgaacagaaactagagatgaaatggtccaaactggctgagaag
cccaaggaccccagggaggcgcgggagaaagcttctacttcctttgactaccgcaagcca
aacgtccaggcgtttgctggaaacagcaagtcccaaccggcctcccagtttgaccccggt
aagcagatcgtggctggcaagaaatgcttcgcagccaaagaactcaaacagatcgcggga
aacaaaagcatgtccttcgtgccccgggatttggacagagggttcagatgcaactggccc
aggagaccgtgtccgccagacttcctggttcttcccgggaccgggaggcaacggccttgg
gaaggttttgtataccatcccaattttaacactgttagaaataattgttactgggaaaaa
gaataa
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