Sorex fumeus (smoky shrew): 130020445
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Entry
130020445 CDS
T10594
Name
(RefSeq) LOW QUALITY PROTEIN: exosome component 10-like
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
sfum Sorex fumeus (smoky shrew)
Pathway
sfum03018
RNA degradation
Brite
Messenger RNA biogenesis [BR:
sfum03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
130020445
BRITE hierarchy
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Other DBs
NCBI-GeneID:
130020445
NCBI-ProteinID:
XP_055967032
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Position
Unknown
AA seq
921 aa
AA seq
DB search
MAPPSSQAPRAXSAASVPQPEEEMVLPGFPDIDSVMTFALRSVEAVIKASGSLPQSGPEY
DFYQSFPGFQTFCETQGDRMLECMSRMMQXYVCQSDIKDCRKVTDLEDKFDSLVDANDAI
LDGVDILLDEASGMKKHQQPVLPIGSQARKMIVSSWNRKAEESGKKTKSEPFRLLHVKNI
IRPQLKFREKIDNSNTPFVPKIFIKPNALKPLPRALSKESREHTKNQSEDPDVPPALVHF
LHQQRTQQVEQDVFAHPYQYELDHFTPPEWALQKPQPQAYKPLQDTACHLVTSLDQLVQL
NATLLACWEFAVDLEHHFYRSFLGLTCLMQISTRTEDFIIDTLELRSDMYLLNESFTDPA
IVKVFHGANSDIEWLQKDFGLYVVNMFDTQQAARLLQLGRHSLDHLLKRYCNVQANKQYQ
LADWRVRPLPEEMLHYAREDTHYLLYIYDCMRLELWAAASEQPTKARVVWQRSRDICLRK
FAKPLFTDESYLKLYEKLKTPLNAQQLTAFRLLFAWRDHLARREDESCCYVLPNRMMLKI
SEELPEKPQGIIACCTPVPPLVWQQLHELHLLIQKARGTPLCQSEVATGVRRRALLPHPE
RLESVPVGPQEHSHAWSGDCPAIPTNGSVPGQTQAGLFPAQHEEKTLVATSRFVATAADT
LFNEASAEQKNKAQKKVQPVVQSLENPFGMLLQALQHNAHISQAAKADPSSSINEISERW
EMASQAQGQKDSKDTARKRAAQVTAAKDEAKEGSQTPAQPALLLRQQIALENAAKKREPT
SDPRAPEQKQEKKWSKLAEKPKDPREAREKASTSFDYRKLKVQAFAGNSKSKLASQFDPG
KQIVAGKKCFAAKELQQTAGNKSMSFVLRELDRGFRCNSPRRPRPPDFRVLPGTGRQRPW
DGFVYHPNFNTVRNNCYWEKE
NT seq
2766 nt
NT seq
+upstream
nt +downstream
nt
atggcacctccgagttcccaggccccaagggctncatcagctgcaagcgttcctcagcct
gaggaggagatggtgctgcctggcttcccggacatcgacagcgtcatgacgtttgctctc
aggtcagtggaggcagtcattaaggcatctgggagcctgccacagtctggcccagaatat
gatttttaccaaagttttcctggcttccaaacattctgtgagactcaaggagacaggatg
cttgagtgcatgagcagaatgatgcagtagtacgtgtgtcagagcgacatcaaggactgc
aggaaagtgacggacttggaagacaaatttgattcattggttgacgccaatgatgctatt
ctggatggagtggacattttactggatgaagcttcaggcatgaagaagcatcagcagccc
gtcctccccatagggtcacaagcccgcaaaatgatcgtgtccagctggaaccggaaggca
gaagaatctggcaaaaaaacaaaatcggaacccttccggctgcttcacgtgaagaacatc
atccgaccgcagcttaaattccgagagaagatcgacaattccaacaccccatttgttccg
aagatcttcatcaagcccaacgccctgaaacctctccctcgggcgctgtctaaggagagt
cgggagcacaccaagaaccaatcagaggacccggatgtgccaccggccctggtccacttc
ctccaccagcagcggacccagcaggtagagcaggacgtgttcgcacacccctatcagtac
gaactggatcactttacgcccccagagtgggcgcttcagaaaccgcagccccaagcctac
aagcccctgcaggacacggcctgccacttggtgacctcgctggaccaactcgtgcaactc
aacgcgacgctcctggcctgttgggaatttgcggtggacttggagcatcacttttaccgg
agcttcctgggcctgacctgcctgatgcagatttccacacgcactgaagacttcatcatc
gacacgctggagctgcgcagcgacatgtacctcctcaacgagagcttcacagaccctgcc
atcgtgaaggtcttccacggcgctaactcagacatagaatggctgcagaaggacttcggg
ctgtacgtggtgaacatgttcgacacgcagcaggcagcgcgccttcttcagctgggccgg
cactccctggaccacttgctgaaacgctactgcaacgtgcaggcgaacaagcagtatcag
ctggccgactggagggtgcgccctttgccggaggaaatgctccactatgcccgcgaggac
acccactacctgctctacatctacgactgcatgaggctggagctgtgggctgctgccagc
gagcagcccacgaaggcccgggtggtgtggcagcgcagtagggacatctgcctccggaag
ttcgccaaaccgctcttcacggatgagtcctacctgaagctgtatgagaagctgaagacg
cctcttaacgcacagcagctgacagccttccggctgctgttcgcctggagggatcacctg
gcaaggagggaggacgagagctgctgctatgtcttgcccaaccgcatgatgctgaagatc
tcagaagagctgcccgagaagccccagggcatcattgcctgctgcacccccgtcccgcct
ctggtatggcaacaacttcatgagctgcatcttctcatccagaaggcgcgaggaacccct
ctgtgccagtcggaagttgccaccggagtgaggaggagagcactgctgccccatcccgag
aggctggaaagtgttcccgttggacctcaagaacactcccacgcttggtctggtgactgc
cctgccatacccaccaatgggtccgtcccgggccagacgcaggccggcctcttcccagcc
cagcacgaagagaagactctggtggccaccagccgcttcgttgccacggccgcggacacc
ttgtttaacgaggcaagtgcagagcaaaagaacaaagcccagaagaaagtccagccagtg
gtgcagtccttggagaacccattcgggatgcttttgcaggcgctccaacacaacgcccac
atttcccaggcagccaaggccgacccttcctccagcatcaatgaaatcagcgagcgctgg
gagatggccagccaggcgcagggacagaaggactctaaggacaccgccaggaagagggca
gcccaggtaacagctgccaaagacgaggccaaggaagggtcgcagacccccgcccagccg
gctctgttgctccgccagcagatcgccctggaaaacgctgccaagaagagagagccaaca
agtgaccccagagcccctgaacagaaacaagagaagaaatggtccaaactggctgagaag
cccaaggaccccagggaggcgcgggagaaagcttctacttcctttgactaccgcaagcta
aaagtccaggcgtttgctggaaacagcaagtccaaactggcctcccagtttgaccccggt
aagcagatcgtggctggcaagaaatgcttcgcagccaaagaactccaacagaccgccgga
aacaaaagcatgtccttcgtgctccgggagttggacagagggttcagatgcaactcgccc
aggagaccacgtccgccagacttccgggttcttcccgggaccgggaggcaacggccttgg
gatggttttgtataccatcccaattttaacactgttagaaataattgttactgggaaaaa
gaataa
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