Sorex fumeus (smoky shrew): 130020895
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Entry
130020895 CDS
T10594
Symbol
SF3B1
Name
(RefSeq) splicing factor 3B subunit 1 isoform X1
KO
K12828
splicing factor 3B subunit 1
Organism
sfum Sorex fumeus (smoky shrew)
Pathway
sfum03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sfum00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130020895 (SF3B1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sfum03041
]
130020895 (SF3B1)
03036 Chromosome and associated proteins [BR:
sfum03036
]
130020895 (SF3B1)
Spliceosome [BR:
sfum03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
130020895 (SF3B1)
Complex B
130020895 (SF3B1)
Complex C
U2 SnRNP specific factors
130020895 (SF3B1)
Chromosome and associated proteins [BR:
sfum03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
130020895 (SF3B1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SF3b1
PPP2R1A-like_HEAT
TOR1L1_N
HEAT_EZ
HEAT_EF3_N
HEAT_ECM29
Htt_N-HEAT_1
HEAT_2
XMAP215_CLASP_TOG
Adaptin_N
UNC45-central
DUF2298
TALPID3
Motif
Other DBs
NCBI-GeneID:
130020895
NCBI-ProteinID:
XP_055967513
LinkDB
All DBs
Position
Unknown
AA seq
1304 aa
AA seq
DB search
MAKIAKTHEDIEAQIREIQGKKAALDEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAA
TELEDDDDDYSSSTSLLGQKKPGYHAPVALLNDIPQSTEQYDPFAEHRPPKIADREDEYK
KHRRTMIISPERLDPFADGGKTPDPKMNARTYMDVMREQHLTKEEREIRQQLAEKAKAGE
LKVVNGAAASQPPSKRKRRWDQTADQTPGATPKKLSSWDQAETPGHTPSLRWDETPGRAK
GSETPGATPGSKIWDPTPSHTPAGAATPGRGDTPGHATPGHGGATSSARKNRWDETPKTE
RDTPGHGSGWAETPRTDRGGDSIGETPTPGASKRKSRWDETPASQMGGSTPVLTPGKTPI
GTPAMNMATPTPGHIMSMTPEQLQAWRWEREIDERNRPLSDEELDAMFPEGYKVLPPPAG
YVPIRTPARKLTATPTPLGGMTGFHMQTEDRTMKSVNDQPSGNLPFLKPDDIQYFDKLLV
DVDESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAGPLFNQILPLLM
SPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNL
AKAAGLATMISTMRPDIDNMDEYVRNTTARAFAVVASALGIPSLLPFLKAVCKSKKSWQA
RHTGIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVRTISALAIAALAEAATPYG
IESFDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAEYANYYTREVMLILIREFQSP
DEEMKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHRMALDRRNYRQLVDTTVEL
ANKVGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAADIDHKLEEQLIDGILYAF
QEQTTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQQAADLISRTAV
VMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMHKMTPPIKDLLPRL
TPILKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLELLKAHKKAIRRATVNT
FGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPE
LNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTASAVVQHMSLGVY
GFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMLQYCLQGLFHPARK
VRDVYWKIYNSIYIGSQDALIAHYPRIYNDDKNTYIRYELDYIL
NT seq
3915 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagatcgccaagactcacgaagatattgaagctcagatccgagaaattcaaggc
aagaaggcggctcttgatgaagctcaaggagtgggccttgattctacaggttactatgac
caggaaatttatggcggaagtgacagcagatttgctggatatgtaacatcaattgctgcc
acagaacttgaagatgatgatgatgactactcatcttctacaagtttgcttggtcagaag
aagccaggatatcatgcccctgtggcattgcttaatgatattccacagtcaactgaacag
tatgacccatttgctgaacaccggccgccgaagattgcagatcgggaagatgagtacaaa
aagcacaggcggaccatgataatttccccagagcgtcttgatccttttgcagatggaggg
aagacccctgatcctaaaatgaatgctagaacttacatggatgtaatgcgagaacaacat
ttaactaaagaagagagagagattaggcaacaactagcagaaaaagctaaagcaggagaa
ctaaaagtcgtcaatggagcagcagcttcccagcctccttcaaagcgaaaacggcgttgg
gatcaaacagctgatcagacgcctggtgccactcccaagaaactgtcaagttgggatcag
gcagagaccccaggacatactccttccttgagatgggatgagacaccaggccgtgcaaag
ggaagtgagactccaggagcaaccccaggctcaaaaatctgggatcctacacctagtcac
acaccagctggagctgctactcctggacgaggcgatacaccaggccatgcgacaccaggc
catggaggcgcaacttctagtgctcgtaaaaacagatgggatgagacccctaaaacagaa
cgagatactcctggacatggaagtggatgggccgaaacacctcgaactgatagaggtggt
gattcaattggtgaaacaccaactcctggtgccagtaaaagaaaatcccgttgggacgaa
acaccagcaagtcagatgggtggaagtactcctgttctgacacctggaaaaacaccaatt
ggcacaccagccatgaacatggccaccccaactccaggtcacataatgagcatgactcct
gaacagcttcaggcttggcgatgggagagagaaattgatgagagaaatcgccccctttct
gatgaagagttggatgctatgttcccagaaggatataaggtacttccccctccagctggt
tatgtccctattcgaactccagctcgaaaactgacagcaacgccaacacctttgggcggt
atgactggtttccacatgcaaactgaagataggactatgaagagtgttaatgaccaaccg
tctggaaatcttccatttttaaaacctgatgatattcagtactttgataaacttttggtt
gatgttgatgaatcaacacttagtccagaagagcaaaaagagagaaaaattatgaaattg
cttttaaaaattaagaatggaactcctccaatgagaaaggctgcattgcgtcaaattact
gataaagcacgtgaatttggagctgggcctttgtttaatcagattcttcctctactgatg
tctcctacacttgaagatcaggaacgtcatttacttgtgaaagttattgacagaattttg
tacaaacttgacgacttagttcgaccttatgtgcataagatccttgtggtcattgaacca
ttgttgattgatgaagattactatgctagagttgaaggcagagagattatttctaatttg
gcaaaggctgctggtctggctactatgatttcgaccatgagacctgatatagataacatg
gatgagtatgtccgtaatacaacagctagagcttttgctgttgtagcctctgcccttggc
attccttcattgttgccctttttaaaggctgtgtgcaaaagtaagaagtcctggcaagca
agacacactggcattaagatcgtacagcagatagccattcttatgggctgtgccattttg
cctcatctcagaagtttagtggaaatcattgagcatggtcttgtggatgaacagcagaaa
gttcgaaccattagtgctctggccattgctgccttggctgaagcagcaaccccttatggt
attgaatcttttgattctgtgttaaagcctctgtggaagggtattcgccaacacagagga
aagggtctggctgctttcttaaaggctattgggtatcttattcctctcatggatgccgag
tatgccaactactacactagagaggtgatgttaatccttattcgagaatttcagtctcct
gatgaagaaatgaagaaaattgtgctgaaggtggtaaagcagtgttgtggaacagatggt
gtagaggcaaactacattaaaacagagattcttcctcctttttttaaacacttttggcaa
cacagaatggctttggatagacgaaactaccgacagttagttgacaccactgtagagttg
gcaaataaagtaggtgctgcagaaattatatccagaattgtggatgatctgaaagatgaa
gcggaacagtacagaaaaatggtgatggagacaattgaaaaaatcatgggcaacttggga
gcagcagatattgatcataaacttgaagaacaattgattgatggtattctttatgccttc
caagaacagactactgaggactcagtaatgttgaatggctttggcacagtggttaatgct
cttggtaaacgagttaaaccttatttgcctcagatctgtggcacagttttatggcgttta
aataacaaatcagcaaaagtgagacaacaggcagccgacttgatctctcgaactgcagtt
gtcatgaaaacttgtcaagaggaaaaattgatgggacatttaggtgttgtcttgtatgag
tatttgggtgaagagtatcctgaagtattgggcagcattcttggagcactgaaggccatt
gtaaatgtaataggtatgcataagatgaccccaccaattaaagatttactgcctagactt
acccccatcttaaagaacaggcatgaaaaagtccaagaaaattgtattgatcttgttgga
cgaattgctgacaggggtgctgaatatgtatctgcaagagaatggatgaggatttgtttt
gagctcttagagctcttaaaagctcacaagaaagctattcgtagagccactgtcaacaca
tttggttatattgccaaggccattggtcctcatgatgtattggctacacttttgaacaac
ctcaaagttcaagaaagacaaaaccgagtttgtaccactgtagcaatagctattgttgct
gaaacatgctcacccttcacagtactacctgccttaatgaatgagtaccgagttcctgaa
ctgaatgttcaaaatggagtgttaaaatcactttccttcttatttgagtatattggtgaa
atgggaaaagactacatttatgctgtaacacccttacttgaagatgctttaatggatagg
gaccttgtacacagacagacggctagtgcagtggtgcaacacatgtcacttggggtgtat
ggattcggttgtgaagattctctgaatcatttattaaactatgtatggcccaatgtgttt
gagacgtctccccacgtaatccaggcagttatgggagcgttggaaggcctaagagttgcc
attggaccttgtagaatgttgcagtattgtttacagggattatttcaccctgcccgaaaa
gtaagagatgtatactggaaaatttacaactccatctacattggttcacaggatgctctc
atagcacattatccaagaatctacaatgatgataagaacacctatattcgttatgaactt
gactatatcttgtaa
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