KEGG   Sorex fumeus (smoky shrew): 130020895
Entry
130020895         CDS       T10594                                 
Symbol
SF3B1
Name
(RefSeq) splicing factor 3B subunit 1 isoform X1
  KO
K12828  splicing factor 3B subunit 1
Organism
sfum  Sorex fumeus (smoky shrew)
Pathway
sfum03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:sfum00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    130020895 (SF3B1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:sfum03041]
    130020895 (SF3B1)
   03036 Chromosome and associated proteins [BR:sfum03036]
    130020895 (SF3B1)
Spliceosome [BR:sfum03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    130020895 (SF3B1)
 Complex B
    130020895 (SF3B1)
 Complex C
   U2 SnRNP specific factors
    130020895 (SF3B1)
Chromosome and associated proteins [BR:sfum03036]
 Eukaryotic type
  Chromatin remodeling factors
   B-WICH complex
    130020895 (SF3B1)
SSDB
Motif
Pfam: SF3b1 PPP2R1A-like_HEAT TOR1L1_N HEAT_EZ HEAT_EF3_N HEAT_ECM29 Htt_N-HEAT_1 HEAT_2 XMAP215_CLASP_TOG Adaptin_N UNC45-central DUF2298 TALPID3
Other DBs
NCBI-GeneID: 130020895
NCBI-ProteinID: XP_055967513
LinkDB
Position
Unknown
AA seq 1304 aa
MAKIAKTHEDIEAQIREIQGKKAALDEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAA
TELEDDDDDYSSSTSLLGQKKPGYHAPVALLNDIPQSTEQYDPFAEHRPPKIADREDEYK
KHRRTMIISPERLDPFADGGKTPDPKMNARTYMDVMREQHLTKEEREIRQQLAEKAKAGE
LKVVNGAAASQPPSKRKRRWDQTADQTPGATPKKLSSWDQAETPGHTPSLRWDETPGRAK
GSETPGATPGSKIWDPTPSHTPAGAATPGRGDTPGHATPGHGGATSSARKNRWDETPKTE
RDTPGHGSGWAETPRTDRGGDSIGETPTPGASKRKSRWDETPASQMGGSTPVLTPGKTPI
GTPAMNMATPTPGHIMSMTPEQLQAWRWEREIDERNRPLSDEELDAMFPEGYKVLPPPAG
YVPIRTPARKLTATPTPLGGMTGFHMQTEDRTMKSVNDQPSGNLPFLKPDDIQYFDKLLV
DVDESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAGPLFNQILPLLM
SPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNL
AKAAGLATMISTMRPDIDNMDEYVRNTTARAFAVVASALGIPSLLPFLKAVCKSKKSWQA
RHTGIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVRTISALAIAALAEAATPYG
IESFDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAEYANYYTREVMLILIREFQSP
DEEMKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHRMALDRRNYRQLVDTTVEL
ANKVGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAADIDHKLEEQLIDGILYAF
QEQTTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQQAADLISRTAV
VMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMHKMTPPIKDLLPRL
TPILKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLELLKAHKKAIRRATVNT
FGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPE
LNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTASAVVQHMSLGVY
GFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMLQYCLQGLFHPARK
VRDVYWKIYNSIYIGSQDALIAHYPRIYNDDKNTYIRYELDYIL
NT seq 3915 nt   +upstreamnt  +downstreamnt
atggcgaagatcgccaagactcacgaagatattgaagctcagatccgagaaattcaaggc
aagaaggcggctcttgatgaagctcaaggagtgggccttgattctacaggttactatgac
caggaaatttatggcggaagtgacagcagatttgctggatatgtaacatcaattgctgcc
acagaacttgaagatgatgatgatgactactcatcttctacaagtttgcttggtcagaag
aagccaggatatcatgcccctgtggcattgcttaatgatattccacagtcaactgaacag
tatgacccatttgctgaacaccggccgccgaagattgcagatcgggaagatgagtacaaa
aagcacaggcggaccatgataatttccccagagcgtcttgatccttttgcagatggaggg
aagacccctgatcctaaaatgaatgctagaacttacatggatgtaatgcgagaacaacat
ttaactaaagaagagagagagattaggcaacaactagcagaaaaagctaaagcaggagaa
ctaaaagtcgtcaatggagcagcagcttcccagcctccttcaaagcgaaaacggcgttgg
gatcaaacagctgatcagacgcctggtgccactcccaagaaactgtcaagttgggatcag
gcagagaccccaggacatactccttccttgagatgggatgagacaccaggccgtgcaaag
ggaagtgagactccaggagcaaccccaggctcaaaaatctgggatcctacacctagtcac
acaccagctggagctgctactcctggacgaggcgatacaccaggccatgcgacaccaggc
catggaggcgcaacttctagtgctcgtaaaaacagatgggatgagacccctaaaacagaa
cgagatactcctggacatggaagtggatgggccgaaacacctcgaactgatagaggtggt
gattcaattggtgaaacaccaactcctggtgccagtaaaagaaaatcccgttgggacgaa
acaccagcaagtcagatgggtggaagtactcctgttctgacacctggaaaaacaccaatt
ggcacaccagccatgaacatggccaccccaactccaggtcacataatgagcatgactcct
gaacagcttcaggcttggcgatgggagagagaaattgatgagagaaatcgccccctttct
gatgaagagttggatgctatgttcccagaaggatataaggtacttccccctccagctggt
tatgtccctattcgaactccagctcgaaaactgacagcaacgccaacacctttgggcggt
atgactggtttccacatgcaaactgaagataggactatgaagagtgttaatgaccaaccg
tctggaaatcttccatttttaaaacctgatgatattcagtactttgataaacttttggtt
gatgttgatgaatcaacacttagtccagaagagcaaaaagagagaaaaattatgaaattg
cttttaaaaattaagaatggaactcctccaatgagaaaggctgcattgcgtcaaattact
gataaagcacgtgaatttggagctgggcctttgtttaatcagattcttcctctactgatg
tctcctacacttgaagatcaggaacgtcatttacttgtgaaagttattgacagaattttg
tacaaacttgacgacttagttcgaccttatgtgcataagatccttgtggtcattgaacca
ttgttgattgatgaagattactatgctagagttgaaggcagagagattatttctaatttg
gcaaaggctgctggtctggctactatgatttcgaccatgagacctgatatagataacatg
gatgagtatgtccgtaatacaacagctagagcttttgctgttgtagcctctgcccttggc
attccttcattgttgccctttttaaaggctgtgtgcaaaagtaagaagtcctggcaagca
agacacactggcattaagatcgtacagcagatagccattcttatgggctgtgccattttg
cctcatctcagaagtttagtggaaatcattgagcatggtcttgtggatgaacagcagaaa
gttcgaaccattagtgctctggccattgctgccttggctgaagcagcaaccccttatggt
attgaatcttttgattctgtgttaaagcctctgtggaagggtattcgccaacacagagga
aagggtctggctgctttcttaaaggctattgggtatcttattcctctcatggatgccgag
tatgccaactactacactagagaggtgatgttaatccttattcgagaatttcagtctcct
gatgaagaaatgaagaaaattgtgctgaaggtggtaaagcagtgttgtggaacagatggt
gtagaggcaaactacattaaaacagagattcttcctcctttttttaaacacttttggcaa
cacagaatggctttggatagacgaaactaccgacagttagttgacaccactgtagagttg
gcaaataaagtaggtgctgcagaaattatatccagaattgtggatgatctgaaagatgaa
gcggaacagtacagaaaaatggtgatggagacaattgaaaaaatcatgggcaacttggga
gcagcagatattgatcataaacttgaagaacaattgattgatggtattctttatgccttc
caagaacagactactgaggactcagtaatgttgaatggctttggcacagtggttaatgct
cttggtaaacgagttaaaccttatttgcctcagatctgtggcacagttttatggcgttta
aataacaaatcagcaaaagtgagacaacaggcagccgacttgatctctcgaactgcagtt
gtcatgaaaacttgtcaagaggaaaaattgatgggacatttaggtgttgtcttgtatgag
tatttgggtgaagagtatcctgaagtattgggcagcattcttggagcactgaaggccatt
gtaaatgtaataggtatgcataagatgaccccaccaattaaagatttactgcctagactt
acccccatcttaaagaacaggcatgaaaaagtccaagaaaattgtattgatcttgttgga
cgaattgctgacaggggtgctgaatatgtatctgcaagagaatggatgaggatttgtttt
gagctcttagagctcttaaaagctcacaagaaagctattcgtagagccactgtcaacaca
tttggttatattgccaaggccattggtcctcatgatgtattggctacacttttgaacaac
ctcaaagttcaagaaagacaaaaccgagtttgtaccactgtagcaatagctattgttgct
gaaacatgctcacccttcacagtactacctgccttaatgaatgagtaccgagttcctgaa
ctgaatgttcaaaatggagtgttaaaatcactttccttcttatttgagtatattggtgaa
atgggaaaagactacatttatgctgtaacacccttacttgaagatgctttaatggatagg
gaccttgtacacagacagacggctagtgcagtggtgcaacacatgtcacttggggtgtat
ggattcggttgtgaagattctctgaatcatttattaaactatgtatggcccaatgtgttt
gagacgtctccccacgtaatccaggcagttatgggagcgttggaaggcctaagagttgcc
attggaccttgtagaatgttgcagtattgtttacagggattatttcaccctgcccgaaaa
gtaagagatgtatactggaaaatttacaactccatctacattggttcacaggatgctctc
atagcacattatccaagaatctacaatgatgataagaacacctatattcgttatgaactt
gactatatcttgtaa

DBGET integrated database retrieval system