Sorex fumeus (smoky shrew): 130021059
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Entry
130021059 CDS
T10594
Symbol
BARD1
Name
(RefSeq) BRCA1-associated RING domain protein 1
KO
K10683
BRCA1-associated RING domain protein 1
Organism
sfum Sorex fumeus (smoky shrew)
Pathway
sfum03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sfum00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
130021059 (BARD1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sfum03019
]
130021059 (BARD1)
04121 Ubiquitin system [BR:
sfum04121
]
130021059 (BARD1)
03036 Chromosome and associated proteins [BR:
sfum03036
]
130021059 (BARD1)
03400 DNA repair and recombination proteins [BR:
sfum03400
]
130021059 (BARD1)
Messenger RNA biogenesis [BR:
sfum03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
130021059 (BARD1)
Ubiquitin system [BR:
sfum04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
130021059 (BARD1)
Chromosome and associated proteins [BR:
sfum03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
130021059 (BARD1)
DNA repair and recombination proteins [BR:
sfum03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
130021059 (BARD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ank_4
Ank
Ank_2
Ank_3
Ank_5
BRCT
BRCT_2
ANK_LRRK2
Ank_KRIT1
NIBRIN_BRCT_II
Motif
Other DBs
NCBI-GeneID:
130021059
NCBI-ProteinID:
XP_055967791
LinkDB
All DBs
Position
Unknown
AA seq
681 aa
AA seq
DB search
MIQLCSKLRSLIYGSNVSDPKEDSGRKNSFSDSENKKNSIKMWFSPRSKKVRYVVSKVSV
QTRPQIVNNENDQEASMYEFVSATPPTVPEKPKRTATRSGRKKKKKTLAEINQKWNLAAG
SEGVERDSEEVKGRLVSFCSQPSVIASPQINGGRDLEASASDTASQFCASPPDVSLPLAE
HTVHEVGTPETKSRNEVSTPKEILCEDNPTPKNSFASCLNGKRDRHNRLSAPLPKRCRHT
LPGPLGDSAASAVVSENGPLPGCSPSPSSVSKGGGTSRRKSSNVLDESFRFSPGTPPPSA
LNSSSYRRMLSSPSARRLTPGGQAAVKRNHRGETLLHLASIKGDVPSVEYLLQNGNDPNV
KDHAGWTPLHEACNHGHLKVVELLLQHQALVNTTGYQNDSPLHDAVKNGHIDIVKLLLSS
GASQNAVNIFGLRPVDYADSENMKSLLLLPVKSESSSSSHGSAAHTGQRRSGPLILIGSG
LSSEQQNMLSELAAVLKAKKCAEFDSTVTHVIVPGDTVQSTLKCMLGILNGCWILNFEWV
KACLQSKEWEQEEKYEIPEGPQRSRLNREQLLPNLFDGCYFYFGGTYKHHPKDNLMKLAT
AAGGQILLRKPKPDSDVTQTINTVAYHAKPDSDQRFCTQYIIYEDLSIHRPEKVRRGKVW
MASSSWLIDCVMSFDLLPLGS
NT seq
2046 nt
NT seq
+upstream
nt +downstream
nt
atgatccagctctgtagtaagcttcgaagtttgatatatggcagtaatgtttcagatccg
aaagaagattcaggtaggaaaaattcattttctgactcagagaataagaagaattcaata
aaaatgtggtttagtccccgaagcaagaaggtcagatacgttgtgagtaaagtttcggtg
caaacccggccgcagatagtaaataatgaaaatgatcaggaggcctccatgtatgaattt
gtttctgcaactcctccaacagttcctgagaagcctaaaaggactgcgacaagatccggg
agaaagaaaaagaagaaaacgttagcggaaatcaaccagaaatggaatttagcggccgga
agcgaaggtgttgaacgggactcggaggaggtgaagggaaggctggtctccttctgcagc
cagccttcggtcatcgccagtccgcagatcaacgggggcagagatttagaagccagcgct
tcggacacagcatctcaattttgtgcaagcccgcccgacgtctctttaccgttggccgag
catacagtgcacgaagtcgggactccagagaccaagagtaggaatgaagtcagcactccg
aaggagattctctgtgaagacaatcccacccccaagaattccttcgcttcctgccttaat
gggaagcgagaccgtcacaacagactctcagcgccccttccaaagagatgtcgccacacc
cttcccggccccctcggggactcggccgcgtcagcagtggtctcagaaaacgggccgttg
cccggttgttctccatcaccctcgagtgtctcgaaaggcggcggcacgtcaaggaggaaa
agcagtaacgtgttggatgagtcctttaggttttcacccggcacgccaccgccctctgcg
ctcaacagctcaagctacaggcgaatgttgtccagcccctcagccaggaggctgacaccg
ggtggccaggcggccgtgaagaggaatcacaggggggagactctgctccatctggcttcg
attaagggtgacgtgccttctgttgaatacctcttacaaaacggaaatgacccaaatgtt
aaggaccatgctggatggacaccactgcacgaggcctgcaatcatggacacctgaaagta
gtagaattattgctccagcaccaggccttagtgaacaccactgggtatcagaatgactca
ccgctgcatgacgcagtcaagaatggccatatagacatagtcaagttgctgctttcctct
ggggcctcacagaatgctgttaacatatttggtctgcggcctgtggattatgcagacagt
gaaaatatgaaatcactattgctgctcccagtgaagagtgaatcatcatcatctagccac
ggctcagcggcacacactggtcagcgcaggagcggccctctgatacttataggcagtgga
ctttcttcagaacagcagaacatgctcagtgaacttgcagcagttctgaaagctaaaaaa
tgtgctgagtttgatagtacagtaacacatgtcattgttcctggtgacacagttcaaagt
actctgaaatgtatgcttgggattctcaatggatgctggatactaaactttgaatgggta
aaagcatgtctacaaagtaaagaatgggaacaggaagaaaagtatgaaattcctgaagga
cctcagagaagcagactcaacagggaacagctgttgccgaacctgtttgatggatgctac
ttctattttgggggaacctacaagcaccatccgaaggacaatctgatgaagctcgccacc
gcggcagggggccaaattctcctccggaaacccaagccagacagcgacgtgactcagacc
atcaacacagttgcttaccacgccaagcccgattctgatcagcgcttctgcacccagtat
atcatctacgaggacttgtctattcatcgcccagagaaggttcggcggggcaaagtctgg
atggcttcctccagctggctgatagattgtgtgatgtcctttgacttgctccctcttggc
agctga
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integrated database retrieval system
