Sorex fumeus (smoky shrew): 130021100 Help Entry 130021100         CDS       T10594                                  Symbol COL3A1 Name (RefSeq) collagen alpha-1(III) chain   KO K19720   collagen type III alpha Organism sfum  Sorex fumeus (smoky shrew) Pathway sfum04611   Platelet activation sfum04820   Cytoskeleton in muscle cells sfum04926   Relaxin signaling pathway sfum04933   AGE-RAGE signaling pathway in diabetic complications sfum04974   Protein digestion and absorption sfum05146   Amoebiasis sfum05415   Diabetic cardiomyopathy Brite KEGG Orthology (KO) [BR:sfum00001]  09140 Cellular Processes   09142 Cell motility    04820 Cytoskeleton in muscle cells     130021100 (COL3A1)  09150 Organismal Systems   09151 Immune system    04611 Platelet activation     130021100 (COL3A1)   09152 Endocrine system    04926 Relaxin signaling pathway     130021100 (COL3A1)   09154 Digestive system    04974 Protein digestion and absorption     130021100 (COL3A1)  09160 Human Diseases   09174 Infectious disease: parasitic    05146 Amoebiasis     130021100 (COL3A1)   09166 Cardiovascular disease    05415 Diabetic cardiomyopathy     130021100 (COL3A1)   09167 Endocrine and metabolic disease    04933 AGE-RAGE signaling pathway in diabetic complications     130021100 (COL3A1)  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:sfum00536]     130021100 (COL3A1) Glycosaminoglycan binding proteins [BR:sfum00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    130021100 (COL3A1) SSDB OrthologParalogGFIT Motif Pfam:  Collagen COLFI VWC VWC2L_2nd Motif Other DBs NCBI-GeneID:  130021100 NCBI-ProteinID:  XP_055967863 LinkDB All DBs Position Unknown AA seq 1463 aa AA seqDB search MMSFVQKGTWLLLALLHPTLILAQQTHEAIDGGCSHLGQSYADRDVWKPEPCQICVCDSG SVLCDDIICDDQELDCPNPEIPFGECCAVCPQPPTVPTRAPNGYGPQGPKGDPGPPGIPG RNGDPGAPGQPGSPGSPGLPGICESCPTGGQNYSPQFDSYDVKAGGGGGGGFPGPAGPPG PPGPPGTSGHPGSPGSPGYQGPPGEPGQAGPSGPPGPPGAIGPSGPAGKDGESGRPGRPG DRGLPGPPGIKGPAGMPGFPGMKGHRGFDGRNGEKGETGAPGLKGENGLPGENGAPGPMG PRGSPGERGRPGLPGAAGARGNDGARGSDGQPGPPGPPGTAGFPGSPGAKGEVGPAGSPG SSGSPGQRGEPGPQGHAGSPGPPGPPGNNGSPGGKGEMGPAGIPGAPGLLGPRGPPGPPG TNGAPGQRGGAGEPGKNGAKGEPGPRGERGEAGTPGTPGPKGEDGKDGSPGEPGANGLPG TAGERGAPGFRGPAGPNGLPGEKGPAGERGGPGPAGPRGVAGEPGRDGLPGAQGMRGMPG SPGGPGNDGKPGPPGNQGESGRPGPPGPSGPRGQPGVMGFPGPKGNDGAPGKNGERGGPG GPGPQGPAGKNGETGPQGPPGPTGPAGDKGESGAPGLPGPQGLPGTNGPPGENGKPGEPG PKGEAGGPGVPGGKGDAGSPGERGPPGAAGPMGPRGAAGPPGPEGGKGPAGPPGTPGNAG PPGLQGMPGERGGPGGPGPKGDKGEPGGPGTDGVPGKDGPRGPTGPIGPPGPAGPAGDKG EGGAPGLPGVAGPRGGPGERGEHGPPGPAGFPGAPGQNGEPGAKGERGAPGEKGEGGPPG VAGPTGGAGPAGPPGPQGVKGERGSPGGPGAAGFPGARGLPGPPGSNGNPGPPGSSGAPG KDGPPGPPGSSGAPGNPGVSGPKGDAGPPGEKGSPGSQGPPGAPGPLGLAGITGARGLAG PPGMPGPRGSPGPQGVKGESGKPGPSGLSGERGPPGPQGLPGLAGTAGEPGRDGNPGSDG LPGRDGSPGGKGDRGENGSPGAPGAPGHPGPPGPVGPSGKSGDRGETGPAGPAGAPGPAG SRGAPGPQGPRGDKGETGERGSNGIKGHRGFPGNPGSPGAPGPAGHQGAVGSPGPAGPRG PVGPGGPPGKDGTSGHPGPIGPPGPRGNRGERGSEGSPGHPGLPGPPGPPGAPGPCCGGA AAISGGGGEKAGGFAPYYGDEPLELKINTEEIMTSLKSISGQLENHISPDGSRKHPARNC RDLKFCHPELQSGEYWVDPNQGCKMDAIKVFCNMETGETCINASPSSVPRKNWWKDSGAK KHVWFGETMDGGFQFNYGNPDLPEDVLDVQLAFLRLLSSRASQNITYHCKNSIAYMDHAS GNVKKALKLMGSNDGEFKAEGNSKFTYTVLEDGCTKHTGEWGKTVFEYRTRKAMRLPIID FAPYDIGGPDQEFGVDIGPVCFL NT seq 4392 nt NT seq  +upstreamnt  +downstreamnt atgatgagctttgtgcaaaaggggacctggttacttcttgctctgcttcaccccactctt attttggcacaacagacccacgaagctattgacggaggatgctcccatcttggtcagtcc tatgcggatagagatgtctggaagccagaaccatgccaaatatgtgtctgtgactcagga tctgttctctgcgatgacataatatgtgacgatcaagaactagattgccctaacccagaa atcccatttggagaatgttgtgcagtatgcccacagcctccaacagttcctactcgagct cctaatggatatggacctcaaggccctaagggagatccaggtcctcctggcatccctggg agaaatggtgatcctggtgccccaggacaacccggatcccctggttctcctggccttcct ggaatctgtgaatcatgccctactggtggtcagaactactctccccagtttgattcatat gatgtcaaggctggaggaggaggtggaggaggctttcctgggccagctggtcctcctggt cctcccggtccccctggtacatctggtcatcctggatctcctggttctccaggataccaa ggtccccctggtgaacctgggcaagctggtccttcaggtcctccaggacctcctggtgct ataggtccatctggccctgctggaaaagatggggaatcaggaagaccaggacgacctgga gacagaggactccctggaccccctggtatcaaaggccctgctggtatgcctggcttccct ggtatgaaaggacacagaggttttgatggacgaaatggagaaaagggagaaactggtgct cctggattaaagggtgaaaatggtcttcctggtgaaaatggagctcctggacctatgggt ccaagagggtctcctggtgagagaggacgaccaggacttcctggggccgctggagctcga ggtaatgatggtgctcgaggaagtgatggacagccaggtccacctggtccccctggaact gcaggattccctggttctcctggtgctaagggtgaagtgggacctgcgggatctcctggt tcgagtggttctccagggcaaagaggtgaacctggaccccagggacatgctggctctcca ggtcctcctggtcctcctgggaataatggcagtcctggtggtaaaggtgaaatgggtcct gctggcattcctggagctcctggacttttaggaccccgtggtcccccaggaccacctggt accaatggcgctcctggacaacgaggtggtgcaggtgaacctggtaagaatggtgccaaa ggggagccaggaccacgtggtgaacgtggtgaagctggtactccgggtactccaggacct aaaggtgaagatggcaaagatggttcacccggagaacctggtgctaatggactcccaggc actgcaggagaacggggtgcacctggattccgaggacctgctggacccaatggccttcca ggagaaaagggtcctgctggagagcgtggtggtcctggtcctgcagggcctagaggagtt gctggagaacctggtcgagatggtctccctggagctcaggggatgaggggtatgcccgga agcccaggaggaccaggcaatgatgggaaaccaggacctcctggcaatcaaggagaaagt ggtcgaccaggacctccaggtccatctggtccccgagggcagcccggtgtcatgggtttc cctggtccaaaaggaaatgatggtgctcctggcaaaaatggagaacgaggtgggcctggt gggcctggaccacagggccctgctgggaagaatggtgaaactggacctcaggggccccct ggacctactgggccagctggtgacaaaggagaatcaggagcccctgggctaccagggcca caaggattgcctggaaccaatggtcctccaggagaaaatgggaaacctggtgaaccaggt cccaagggtgaagctggtggacctggagttccaggaggcaaaggtgatgctggttcccct ggtgaacgtggacctcctggagcagctggtcctatgggacctagaggcgcagctggccct cctggtccagaaggaggaaagggccctgctggtccccctggaacacctggtaatgctggc cctcctggtctgcaagggatgcctggagaaagaggaggtcctggaggtcccggaccaaag ggtgacaagggtgaaccaggtggtccaggtactgatggtgttcctgggaaagatgggcca aggggtcctactggtccaattggccctcctggcccagctggcccggctggagataagggt gaaggtggtgcccctggacttcctggtgttgctggtcctcgtggtggtcctggggagaga ggtgaacatgggcctccaggaccagctggcttccctggtgctccagggcagaatggtgag cctggtgctaaaggagaacgaggcgcccctggtgagaaaggtgaaggaggtcctcctggt gtcgcgggacccactggtggtgctgggccagctggtccccctggtcctcaaggtgtcaaa ggagaacggggaagtcctggtggtcctggtgctgctggctttcctggtgctcgtggtctt cctggtcctcctggtagtaatggcaacccaggcccccctggctctagtggtgctccaggc aaggatgggcccccaggtccacccggtagcagtggggctcctggcaaccctggtgtgtca ggaccaaaaggtgatgctggcccaccaggagagaagggatctccaggaagccagggacct ccaggagctccaggcccacttggacttgcaggaattacaggagcacgaggtcttgcagga ccaccagggatgccaggtcctaggggaagccctgggccacagggtgtcaagggtgaaagt ggaaaaccaggacctagtggtctcagtggagaacgtggtccacctggtccgcaaggtctt cctggtttggccggtacagctggtgaacctggaagagatggtaaccctggatcagatggt cttccaggccgagatggttctcctggtggcaagggtgatcgtggtgaaaatggctctcct ggtgccccaggtgctcctggtcatccaggaccccctggtcctgttggtccctctgggaag agtggtgatagaggagaaactggcccagctggtcctgctggagctccaggtcctgctggc tcccgtggtgctcctggtccccaaggtccacgcggtgacaaaggtgaaacaggtgaacgc ggatctaatggcatcaaaggacatcgaggattccctggtaatccaggctcccctggtgct ccaggccctgctggccaccaaggtgcagtgggtagtccaggacctgcaggtcccagagga ccggttgggcctggtggacctcctggcaaagatggaacaagtgggcatccaggtcctatt ggaccacctgggcctcggggtaacagaggagaaagaggatctgagggttctccaggtcac ccaggactacctggccctcctggacccccaggtgctcctggtccatgctgtggtggggct gctgctatctctggtggtggaggtgaaaaagctggtgggtttgctccatattatggagat gaacctttagaattaaaaatcaacacggaagagatcatgacctcactcaaatcgatcagt ggacaacttgaaaaccacattagtcctgatggttctcgtaaacatcctgcccggaactgc cgagatctgaagttctgccatccggaactccagagtggagaatattgggttgatcctaat caaggttgcaagatggatgctattaaggtattctgtaatatggagactggagaaacatgt ataaatgccagtccttcaagtgttccacgtaagaactggtggaaagattctggtgctaag aaacatgtttggtttggagaaaccatggatggtggatttcagtttaactacggcaatcct gatcttcctgaagatgtccttgatgtccagctggctttcctcagacttctttctagccgg gcctcccagaacatcacatatcactgtaagaatagtattgcctacatggatcatgccagt gggaatgtaaagaaagcgctgaaactaatgggatcaaatgatggagaattcaaggctgaa ggaaacagtaaattcacatacacagttctggaggacggttgcactaaacacactggggaa tggggcaagaccgtctttgaatatagaacacgcaaggctatgagactacctattatagat tttgcaccctatgatattggtggtcctgatcaagaatttggtgtggacattggccctgtt tgctttttgtaa

DBGET integrated database retrieval system