Sorex fumeus (smoky shrew): 130021542
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Entry
130021542 CDS
T10594
Name
(RefSeq) cleavage stimulation factor subunit 2 tau variant-like
KO
K14407
cleavage stimulation factor subunit 2
Organism
sfum Sorex fumeus (smoky shrew)
Pathway
sfum03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sfum00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
130021542
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sfum03019
]
130021542
Messenger RNA biogenesis [BR:
sfum03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
130021542
U7-dependent histone pre-mRNA processing factors
130021542
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CSTF2_hinge
RRM_1
CSTF_C
RRM_7
RRM_10
Motif
Other DBs
NCBI-GeneID:
130021542
NCBI-ProteinID:
XP_055968281
LinkDB
All DBs
Position
Unknown
AA seq
678 aa
AA seq
DB search
MERSLRSVFVGNIPYEATEEQLKAIFSEVGSVVSFRLVCDRETGQPKGYGFCEYRDAATA
LSAMRNLNGRECSGRALRVDNVASERTRDEPPPRRVPAPPAPAAATATATVAALDSPYGP
AVDPEDAPESIARAVASLPPEQMIELMLQMKLCVQNNRAETRSLLLQNPQLAYALLQAQV
VMGLMEPGLALSILHRRTRVVPPLLLGKAQSAASTNAGVAAAGPGPEPAPGHGPKVLPSQ
QKPQRQPSSARRPAKDIPPPLRQTPKKGGIPAPGGPIPTAASSPGGPILTAAPGPGPGPL
SPSRAMQPQVGLPGVRPVPLEQGEVQMADPRAHGPRAPRSAGGLSPQGLLGDAPNDPRGG
TLLSVTGEGEPRGRLGPTHQGPPKHLASGHEGRGPSRREVRGGPQAEPRVLLREPRGPMR
DPRVNGRAGREARGLEAQAMETEASETCVSERRGMEASAVETRGMEARGTHVRGAMIRGH
RSSSRSPMTGAVPGCGPVSTGAGGPQGSRKVPVISGLGNSGAAKQGVGLKGVGVQEGGMQ
GAGKQEGGMQGAGKQGGGMQGTGLQGGGMQGVGMQKGGMQRVGVQGGSMQKAGVQGVGMQ
GPGVQGAGRKGGASKQDRGQPSSFSSGLSQVTPQDRKKAALIMQVLQLTADQIATLPPEQ
RQIILILKEQIQKFAGAS
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atggagcgctcgctgcgttcggtgttcgtgggcaacatcccctacgaggccacggaggag
cagctgaaggccatcttctcggaggtgggcagcgtggtgagcttccggctcgtgtgcgac
cgcgagacgggccagcccaagggctacggcttctgcgagtaccgcgacgcggccacggcg
ctgagcgccatgcgcaacctgaatgggcgcgagtgcagtggccgcgcgctgcgggtggac
aatgtggccagcgagaggacccgggacgagccgccgccacggagggtcccggcgcccccg
gcacccgccgctgccaccgccaccgccaccgttgctgccctcgactctccttacggaccc
gcggtggaccctgaggacgcccccgagtccatcgcccgggccgtggccagcctgcccccc
gagcagatgatcgagctgatgctgcagatgaagctgtgcgtgcagaacaaccgcgccgag
acgcggagcctgctgctgcagaacccgcagctggcctacgcgctgctgcaggcgcaggtg
gtcatgggcctcatggagcccggcctggcgctcagcatcctgcaccgcaggacccgcgtc
gtcccgccgctgctcctgggcaaagcccagagcgccgcctccaccaatgccggagtcgct
gctgccggacccggaccggagcctgcaccgggccatggccccaaggttctgccgagccag
cagaagcctcagcggcagccttcttcggccaggcggcctgcaaaagacattccgccgccc
ctgaggcagaccccgaagaagggtggcattcccgcgcccggggggccaataccgaccgct
gcctccagtcccggggggccaatactgaccgctgccccgggacccgggccgggcccccta
tctcccagcagggcgatgcagccccaagttgggttgcccggggttaggccggtgcctttg
gagcagggtgaggtgcagatggcagatcctcgagctcacggaccgcgtgcaccgcggagt
gccggtggcctctctccgcaaggactcttaggagatgcaccaaatgaccctcgtggaggg
actttgctttcggtcaccggagaaggagagcccagaggccgcctgggcccaacccatcag
gggccccccaagcacctcgcctctggccatgaaggccgtggcccctccagacgtgaggtg
agaggtgggccgcaggcagagcccagagtgcttctcagagagccccgaggacccatgcgc
gatccaagagtgaatggcagagctggcagagaggcccgaggtctggaggctcaagctatg
gagacggaggcctcggagacctgcgtgtcggagagaagagggatggaggccagcgcggtg
gaaaccagaggaatggaagcgagaggaacgcatgtgagaggagcgatgataaggggccat
cgctctagttcgagaagccccatgactggtgcagttccgggctgtggacccgttagtacg
ggggccggtggtcctcagggatccaggaaggtcccagttatctccgggttgggaaattct
ggagctgccaagcagggagtgggcctgaagggagtgggcgtgcaggaaggaggaatgcag
ggggcaggcaagcaggaaggaggaatgcagggggcaggcaagcagggaggaggtatgcag
gggacaggcttgcagggaggaggaatgcagggggtaggtatgcagaaaggaggaatgcag
agggtaggtgtgcagggaggaagtatgcagaaggcaggtgtgcagggagtaggaatgcag
gggccaggtgtgcagggagccggtagaaaaggtggagctagtaagcaagatagaggccag
cctagcagttttagctccgggctgagccaggtaactccacaggatcgaaaaaaggcagct
ttgatcatgcaagtgctccagctaactgcagatcagattgccacactgcctccggagcaa
aggcagattatcctgattttaaaggagcaaatccagaagttcgctggagcttcttga
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integrated database retrieval system
