Sorex fumeus (smoky shrew): 130021750
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Entry
130021750 CDS
T10594
Symbol
SKIC3
Name
(RefSeq) superkiller complex protein 3
KO
K12600
superkiller protein 3
Organism
sfum Sorex fumeus (smoky shrew)
Pathway
sfum03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sfum00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
130021750 (SKIC3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sfum03019
]
130021750 (SKIC3)
Messenger RNA biogenesis [BR:
sfum03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
130021750 (SKIC3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_1
TPR_2
TPR_16
TPR_19
TPR_17
TPR_8
TPR_14
TPR_CcmH_CycH
TPR_11
TPR_12
TPR_9
ANAPC3
ARM_TT21_2nd
Sel1
Fis1_TPR_C
DUF7017
ARM_TT21_C
TPR_15
TPR_30
TPR_5
BTAD
TPR_20
Motif
Other DBs
NCBI-GeneID:
130021750
NCBI-ProteinID:
XP_055968519
LinkDB
All DBs
Position
Unknown
AA seq
1567 aa
AA seq
DB search
MSSKEVKTALKSARDAIRNKEYKEALKHCKTVLKQEKNNYNAWVFIGVAAAELEQPDQAQ
GAYKKAAELEPDQLLAWQGLASLYEKCNHINAKDDLPGVYQKLLDLYESVDKQKWCDVCK
KLVDLYSQERKHVEVGRTWHKLIKTRQEEGADNQELHQLWRKLTQLLADSPEDQNNETQQ
LLLSAFENALVLSDKIPSEDHQVLYTHFIQCLSKFPNETARLTKACEEMISIYPTVQYPL
EVLCLHLIDSGNLTDEGHQYCCRLVEMDSKSGPGLIGLGIKAFQDKRYEDAVRNLAEGLK
ECSLCTTGWYHQAKALVKLHRPKEAVLSCTQALKNIDSLGVSGDQKIRDQKNLCLHVKAE
ALIKLSDLESSEEAIRTLDQVSDANNIPGLLVLKSLAYLNIGSLDEATKIMEDLLSSYPD
LAEVCALEGFFHFTSKDYLQAETCFQRALEKNAEVAEYHYQLGLTYWSMGEETRKDKTKA
LTHFLKAAKLDPYMGKVFCYLGRYYRDVVGDRNRARGCYRKAFELDDSDTEAGAAAVDLS
VELEEMETALALLTAVTQKASAGTAKWAWLRRGLYYLKAGQHGQAVADLQAALRADPKDF
NCWESLGEAYLSRGGYTTALKSFTKASELNPESTYSVFKVAAIQQILGKYKEAVAQYQLI
IKKKEDYVPALKGLGECHLMMAKAALVDYLDGKAVDYVERALEYFTWALQHRADVSCLWK
LVGDACTSLHAVSPAKVNVSVLGVLLGQKEGKQVLNKNELLHLGGRCYGRALKLMSTSNT
WCDLGINYYRRVQHLAESGSSGNELNELLEKSLHCLKKAVRLDSSNHLYWNALGVVSCYS
GIKNYALAQHCFIKSIQSEQINAVAWTNLGVLYLANENIEQAHEAFKMAQSLDPSYLMCW
IGQALIAETVGSYDTMDLFRHTTELSMHTEGAIGYAYWVCTTLQDKSNRETELYRYNILQ
MNAVPAAQVVMSKYVERIPNYAPAFTMLGYLSEHLQLKKEAASAYHRAMLLLQTAEDRDM
YNVAVRNYGRLLCSIGEYDKAIQAFKSIPLEDLEDIIGYALALSMKGQYKESSQAYEKAL
SVVESEQDKAHILTALAIMEYKQGKMDAAKTLLFKCSILKEPTTESLLALCALGLAAQDA
TLSKAALNELLKHKKEKDDEYQRCLLTSAIYALQGRRVAVQRQVSKAVHSNPANPALWSL
LSRVVAQYPQQNAKGGALAGNVAHILDSDHGKKALLYTAVNQLAVGSSSADVGKGTALKT
IQKAALLSPGDPAVWAGLLAACHADDKLALVNSTQPKRTGLALALRSAVSVSIKNKEFLE
NYHQALEKWSLSQTVTSLIDTGRISEAEALCTKNLVSNPDQPAVMLLLRQVQCKALLDSQ
KPLPDAVLEELQKTVLLNSTSVPAWQWLAHIYQSQGMMSAAEMCYRKSLQVASQQGSWSG
KLSSLLRLALLALEVCMANISSDHWPSLVQEATTEALKLCFCPLAVLLQALLQFNRKMGA
RETRRLLERVVYQPGYPRSVVSTARWYLLRHLYAKNDCELIDVLINNAKTHGDTRALELN
QKLASQQ
NT seq
4704 nt
NT seq
+upstream
nt +downstream
nt
atgtctagcaaggaagtgaagactgctctcaaaagtgctagagatgccatcagaaataaa
gaatacaaagaagcactgaaacattgcaagacagtgttaaagcaagagaaaaataactac
aatgcctgggtttttatcggtgttgctgcagctgagctagaacaacctgatcaggcccag
ggtgcctataagaaagccgctgagctagaaccagaccaactactggcgtggcaggggtta
gcaagtttgtatgagaaatgtaatcacattaatgccaaggacgacttacctggtgtttac
caaaagctcttggatctttatgaaagtgttgacaagcagaaatggtgtgatgtctgtaaa
aaacttgtggatctgtattcccaagaaaggaagcacgtagaggtgggccgcacatggcac
aaattgataaagacccgacaggaagaaggtgcagacaaccaagagcttcatcagctatgg
aggaaactgactcagttgctggcagacagccccgaggaccagaataacgagacccagcaa
ctgcttttatctgcttttgagaatgcactggtcttatcagataagattcctagtgaagat
caccaagtactgtatacacatttcattcagtgtttatccaaatttccaaatgagactgct
cggttgacgaaggcttgtgaagaaatgataagcatctatcctactgttcaatatccatta
gaagtgctttgtctgcatttaatagattcaggaaatcttacagatgagggacatcagtat
tgttgcagactggtggaaatggattcaaaaagtggtccaggtctgattggtctaggcatt
aaagcatttcaagataaaaggtatgaagatgctgttaggaacttagcagaagggttaaag
gaatgttcgctctgcacaactggatggtatcaccaggcaaaagccctcgtcaaactgcac
agacctaaggaagctgttctttcatgcactcaagctctaaagaacattgatagtctcggt
gtgtctggtgatcagaagatcagagatcagaagaatctttgtctgcatgtgaaagccgag
gctttgattaaactctccgacttggaatcttcggaggaagcaatccgtactcttgatcag
gtgtctgacgcaaataatattccaggacttttggttcttaagagcttggcttacttgaac
ataggctcattagatgaagctacaaagattatggaagatcttctctcttcttaccctgac
ctagctgaagtttgtgccctagaaggtttttttcattttacaagtaaggattatctacaa
gcagaaacatgttttcagagagcccttgagaaaaatgctgaagttgcagaatatcattac
caacttggattaacatattggtccatgggtgaagaaacaagaaaggataaaacaaaggct
cttacccactttcttaaggctgccaagctagacccgtacatgggcaaagttttctgctat
ttaggtcgttactacagagatgtagtaggtgataggaacagagcccgcgggtgctacagg
aaagcttttgaactggatgactctgatactgaagctggagctgcggcggttgacttaagt
gtagaactggaagagatggagactgccttggccctcctgacagctgtgacccagaaggcc
agcgcgggaaccgccaagtgggcctggctccggcgcgggctatactatttgaaggctggg
cagcatggtcaagcagtggctgatttgcaggcagcattaagagcagacccgaaggacttc
aattgttgggagtcactgggagaagcttacctcagcagaggtggttacacaacagccctg
aaatccttcacaaaagccagcgagctgaacccggaatccacgtacagtgtgtttaaggtt
gcagcaatacagcaaatccttggcaagtacaaggaggcggtcgctcagtaccagctgatc
attaaaaagaaagaggattatgtgcctgctttgaaaggcttgggcgagtgccatctcatg
atggcaaaagcagctctcgtggattatctggatgggaaagctgtggactatgtagagaga
gccctggagtattttacttgggctctgcagcatcgagctgatgtgtcttgcctgtggaag
ctagttggggatgcttgtaccagcctgcatgctgtctcaccagctaaagtgaatgtcagt
gttttaggagttctattaggtcagaaagaaggaaaacaagtattaaacaaaaatgaactc
ctccatcttggaggaaggtgttatggtcgtgcattaaaattaatgtcaacatctaacaca
tggtgtgatcttggaattaattattatcgccgagtacagcatcttgcagaatcaggcagc
agcgggaatgagctcaatgagttgttggagaaatctctacattgtctcaaaaaggcagtg
aggctcgacagtagtaaccatttatactggaatgctcttggtgtggtttcatgttatagt
ggaattaaaaattatgcccttgctcagcactgtttcatcaaatcaatccagtcagaacaa
attaatgctgtcgcatggaccaacttgggagttttatatcttgcaaatgaaaacattgag
caagctcatgaagctttcaaaatggctcagtcccttgacccatcttatttgatgtgctgg
attggacaggctcttattgcagaaacggttggaagttatgacactatggacctcttcagg
catactacagaacttagtatgcataccgagggagcaataggttatgcctattgggtctgt
acgacactgcaggataaaagcaacagagagacagagctgtaccgttacaacatcctccag
atgaatgctgttccagcagcgcaagttgttatgagcaaatatgttgagagaattccgaat
tacgctccagctttcacaatgttgggttatttaagtgagcacctgcagctgaaaaaggag
gcagccagcgcatatcacagggccatgttgttgttgcagactgcagaggaccgagatatg
tataatgttgcagtaagaaattatggcaggctgttatgttccattggtgaatatgataaa
gctatccaggcttttaagtcaatacctcttgaagacttagaagacatcataggctatgcg
ctggctttgtctatgaagggtcaatataaagagagcagccaagcttatgagaaagccttg
tctgttgttgaatcagagcaagacaaagcccatatattgacagctctggcaataatggag
tataaacaaggaaaaatggatgcagccaagacattactatttaaatgctctattttaaag
gaacccaccacagaaagccttctggccttgtgtgctctgggattggcagcacaggatgct
accctatcaaaagcagccctaaacgagttactcaaacacaaaaaagagaaagatgatgag
taccagagatgccttcttacctcggccatctatgcactgcagggccgcagagtggctgtg
cagagacaagtatctaaagccgtccacagtaacccagctaatccagctctttggtctctg
ctgtcccgagtggttgctcagtatccccaacagaatgcaaaggggggtgctctagcaggg
aatgtggctcatattctggactcagatcatggaaagaaggcattactgtacactgcagtg
aatcagttggctgtaggaagcagctcagcagacgttgggaagggaactgcgctcaagacc
attcagaaggcagcactcctgtctccaggtgatcccgctgtctgggctgggctactagca
gcctgtcatgctgatgataaactggctctggtaaacagtactcaaccaaagagaacgggt
ctagccttggcactgcggtctgctgtttctgtatcaattaaaaacaaagaattccttgaa
aattaccaccaagctcttgaaaagtggtctctttcccaaactgtcactagtctgatagac
acaggaagaatatctgaggccgaagccctttgcacaaagaacttagtcagtaaccctgac
cagccagctgttatgttacttttgaggcaagttcagtgtaaagcactgttggactcgcag
aagcctctccccgatgctgtccttgaagaactgcagaaaacagtcctgttgaattccacc
tctgttccagcctggcagtggctggcacacatatatcagtcccaaggaatgatgagcgct
gcagagatgtgttacaggaagagtcttcaagtcgcatcccagcagggcagctggagtgga
aaactctcaagcctgctgagactcgcactgcttgcgttagaagtgtgcatggctaatatt
tccagtgaccactggccatccttagttcaagaagctacaactgaggccttaaaactttgc
ttttgtccactggctgtcctcctacaagctttattacaattcaatcgcaaaatgggtgca
agagagacacggcgtcttttggagagagtggtgtatcagccagggtaccccagatctgtt
gtatcaaccgcacgttggtacttactgagacacttatatgccaaaaatgactgcgagctc
attgatgtgctgataaacaatgccaaaactcacggagatacaagagctttggaactgaat
cagaaattggcctcacagcaataa
DBGET
integrated database retrieval system
