KEGG   Sorex fumeus (smoky shrew): 130022106
Entry
130022106         CDS       T10594                                 
Symbol
MED16
Name
(RefSeq) mediator of RNA polymerase II transcription subunit 16
  KO
K15159  mediator of RNA polymerase II transcription subunit 16
Organism
sfum  Sorex fumeus (smoky shrew)
Pathway
sfum04919  Thyroid hormone signaling pathway
Brite
KEGG Orthology (KO) [BR:sfum00001]
 09150 Organismal Systems
  09152 Endocrine system
   04919 Thyroid hormone signaling pathway
    130022106 (MED16)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:sfum03021]
    130022106 (MED16)
Transcription machinery [BR:sfum03021]
 Eukaryotic type
  RNA polymerase II system
   Mediator complex
    Tail
     130022106 (MED16)
SSDB
Motif
Pfam: Med16_bridge Med16_N Med16_C WD40 Beta-prop_IFT140_1st Beta-prop_WDR3_1st Beta-prop_IFT122_1st ANAPC4_WD40 Beta-prop_THOC3 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_HPS5 Beta-prop_WDR35_TULP_N WD40_Prp19 Beta-prop_WDR5 Beta-prop_NUP159_NUP214 DSE1_N Beta-prop_EML DPBB_PEX6 Beta-prop_EML_2 ASA1
Other DBs
NCBI-GeneID: 130022106
NCBI-ProteinID: XP_055968813
LinkDB
Position
Unknown
AA seq 829 aa
MDLAYICEWEKWPKTTHCPSVPLVCAWSCRNLIAFTTDLRNDDQDLTRRIHILDTEHPWD
VHSIPSEHRETVTCLEWDQSGSRLLSADADGQIKCWSMADHLANSWESPAGSLVEGDPIV
ALSWLHNGVKLALHVEKSGASSFGEKFSRVKFSPSLTLFGGKPMEGWIAVTVSGLVTVSL
LKPSGQVLTSTESLCRLRGRVALADIAFTGGGNIVVATADGSSASPVQFYKVCVSVVSEK
CRIDTEILPSLFMRCTTDLNRKDKFPAITHLKFLARDMSEQVLLCASSQTSSIVECWSLR
KEGLPVNNIFQQISPVVGEKQPMILKWRILSATNDLERVSAVALPKLPISLTNTDLKVAN
DTQFFPGLGLALAFHDGSVHIVHRLSLQSMAVFYSSAAPRPMDEPALKRPRTTGPAVHFK
AMQLSWTSLALVGIDNHGKLSMLRISPSMGHALDVSLALRHLLFLLEYCMVTGYDWWDIL
LHVQPGMVQSLVERLHEEYTRQNAALQQVLSTRILAMKASLCKLSPCTVTRVCDYHAKLF
LIAISSTLKSLLRPHFLNTPDKSPGDRLTEICSKITDVDIDKVMINLKTEEFVLDMNTLQ
ALQQLLQWVGDIVLYLLASLPNQGSPLRPGHSFLRDGTSLGMLRELMVVIRIWGLLKPSC
LPVYTATSDTQDSMSLLFRLLTKLWICCRDEGPSSEPDEALLDECCLLPSQLLIPNLDWL
PVSDGLVSRLQPKQPLRLQFGRAPALPRGAAALQLEGLVRAPGQPKIDHLRRLHLGAHPT
EECKACTRCGCVTMLHSPNKATAVKQWEQRWIKNCLCGGLWRRLPLSCP
NT seq 2490 nt   +upstreamnt  +downstreamnt
atggacctggcttacatctgcgagtgggagaagtggcccaagaccacccactgcccgtcc
gtgcccctggtctgtgcctggtcctgccgtaacctcattgccttcactacagacctccgg
aacgatgatcaggacctgacccgccggatccacatcctggacacggagcacccctgggat
gtgcactccattccctcagagcaccgcgagaccgtcacctgtcttgagtgggaccagtca
ggctcccggctcctgtcagccgacgccgacgggcagattaagtgctggagcatggccgac
cacctcgccaacagctgggagagccccgcgggcagcctggtggagggggaccccatcgtg
gccctgtcctggctgcacaacggggtgaagctggctttgcacgtggagaagtcgggcgcc
tccagcttcggggagaagttctcccgcgtcaagttctcgccctccctcacgctgtttggc
gggaagcccatggagggctggattgcggtgacggtcagtgggctggtcaccgtgtccctg
ctgaagcccagcgggcaggtgctgacgtccaccgagagcctgtgccggctgcggggccgc
gtggccctggccgacatcgccttcacgggtggcggcaacatcgtggtggccacggcggat
ggcagcagcgcgtcccccgtgcagttctacaaggtatgcgtgagcgtggtcagcgagaag
tgccgcatcgacaccgagatcctgccctcgctcttcatgcgctgcaccacggacctcaac
cgcaaggacaagttccccgccatcacccacctcaagttcctagcccgggacatgtcagag
caggttctcctgtgcgcctccagtcagacgagcagcatcgtggagtgctggtccctgcgg
aaggaggggctcccggtgaacaacatcttccagcagatctcccctgtggttggtgagaag
cagcccatgattctcaaatggcggatcctgtcggccaccaatgacctggaacgcgtgtcc
gccgtggcgctgcccaagctgccaatctcgctcaccaacacggacctgaaggtggccaac
gacacccagttcttccccggcctcgggctggccctggccttccacgacggcagcgtccac
atcgtgcaccggctctcgctgcagtccatggccgtcttctacagctcggccgccccgcgc
cccatggacgagcccgccctcaagcgcccacgcactacggggccagccgtgcacttcaag
gccatgcagctctcctggacctccctggccctcgtgggcattgacaaccatggcaagctc
agtatgctgcgaatctcgccttccatgggccacgcactggacgtgagcctggcactgcgg
cacctgctcttcctgctggagtactgcatggtgacgggctacgactggtgggacatcctg
ttgcacgtgcagcctggcatggtgcagagcctggtggagcggctgcacgaggagtacacg
cgccagaacgccgcactgcagcaggtcctgtccacccgcatcctggccatgaaggcctcc
ctgtgcaagctgtcgccctgcacggtgacgcgcgtgtgcgactaccacgccaagctcttc
ctcatcgccatcagctccacgctcaagtcactgctgcgcccgcatttcctcaacacgccc
gacaagagccccggggaccgcctgaccgagatctgctccaagatcacggacgtcgacatc
gacaaggtcatgatcaacctgaagacggaggagttcgtgctggacatgaacacgctgcag
gcgctgcagcagctgctgcagtgggtgggcgacatcgtgctctacctgctggccagcttg
cccaatcagggctccccgctgcggcctggtcacagcttcctgcgtgacggcacctcgttg
ggcatgttgcgggagctcatggttgtcatccgcatctgggggctcctgaagcccagctgc
ctgcccgtgtacacggccacctctgacactcaggacagcatgtccctgctcttccgcctg
ctcaccaagctctggatctgctgccgtgacgagggccccagcagcgagcccgatgaagca
cttctggatgagtgttgcctgttgcctagccagctgctcatccccaacctggactggctg
cccgtcagcgatggtctggtcagccgcctgcagcccaagcagcccctgcggctgcagttt
ggccgggcgcctgctctgccccgcggcgccgctgccctgcagctggaaggcctggtcagg
gctccgggccagcccaagatcgaccacctgcggcggctgcacctgggggctcaccccaca
gaggagtgcaaggcgtgcaccaggtgtggctgcgtcaccatgctccactcccccaacaag
gcgacggcggtcaagcaatgggaacagcgctggatcaagaactgcctgtgtggggggctg
tggcggcgcctgcccctcagctgcccctga

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