Sorex fumeus (smoky shrew): 130022115
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Entry
130022115 CDS
T10594
Symbol
PTBP1
Name
(RefSeq) polypyrimidine tract-binding protein 1 isoform X1
KO
K13218
polypyrimidine tract-binding protein 1
Organism
sfum Sorex fumeus (smoky shrew)
Brite
KEGG Orthology (KO) [BR:
sfum00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sfum03019
]
130022115 (PTBP1)
03041 Spliceosome [BR:
sfum03041
]
130022115 (PTBP1)
Messenger RNA biogenesis [BR:
sfum03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Trans-acting binding proteins
130022115 (PTBP1)
Spliceosome [BR:
sfum03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
130022115 (PTBP1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_5
RRM_1
RRM_8
RRM_occluded
RRM_PARP14_3
RRM_Nup35
Motif
Other DBs
NCBI-GeneID:
130022115
NCBI-ProteinID:
XP_055968834
LinkDB
All DBs
Position
Unknown
AA seq
557 aa
AA seq
DB search
MDGIVPDITVGTKRGSDELFSTCASNGPFTMSGSSASAANGNDSKKFKGDNRSAGVPSRV
IHIRKLPSDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPV
LRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMAMAGQ
SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLS
LDGQNIYNACCTLRIDVSKLTSLNVKYNNDKSRDYTRPDLPSGDTQPSLDHTVAAAFGAP
GIMSASPYAGAGFPPTFAIPQAAGLSVPNVHGALAPLAIPSAAAAAAAAGRIAIPGLAGA
GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKVLFNKKENALVQMADGSQAQLAMSHL
NGHKVHGKPVRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSA
TLHLSNIPPSVSEEDLKHLFSSNGGMVKGFKFFQKDRKMALIQMGSVEEAIQALMDLHNH
DLGENHHLRVSFSKSTI
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atggacggcattgtcccagatataacagtcgggaccaagcggggatctgacgagctcttc
tccacctgcgccagtaacgggccgttcaccatgagcggcagctcggcctccgcagccaat
gggaacgacagcaagaagttcaagggggacaaccggagcgccggggtgccctcgcgggtc
atccacatccgcaagctgcccagcgacgtcacggagggcgaggtcatctccctggggctg
cccttcgggaaggtcaccaacctcctgatgctcaagggcaagaaccaggccttcatcgag
atgaacacggaggaggcggccaacaccatggtgaactactacacgtcggtgacgcccgtg
ctgcggggccagcccatctacatccagttctccaaccacaaggagctcaagaccgacagc
tcccccaaccaggcgcgggcccaggccgccctgcaggccgtgaactcggtccagtcgggc
aacctggccctggccgcctcggccgcggccgtggacgcgggcatggccatggccggccag
agcccagtgctgcgcatcatcgtggagaacctcttctacccagtgaccctggacgtgctg
caccagatcttctctaagttcggcaccgtcctgaagatcatcaccttcaccaagaacaac
cagttccaggcgctcctgcagtacgcggaccccgtgagcgcccagcacgccaagctgtcg
ctggacggccagaacatctacaacgcctgctgcacgctgcgcatcgacgtgtccaagctg
accagcctcaacgtcaagtacaacaacgacaagagccgggactacacgcggcccgacctg
ccctccggggacacgcagccctcgctggaccacaccgtggccgccgccttcggtgcgccg
ggcataatgtccgcctctccgtatgcaggagctggtttccctcccacctttgccatccct
caagccgcaggtctctctgttccgaacgtgcacggggccctggcccctctggccattccc
tcggcggcggcggccgcagcggcagcgggcaggatcgccatcccgggcctggccggggca
gggaactccgtcctgctggtcagcaacctgaaccccgagagagtcacaccccaaagcctc
tttattcttttcggcgtctacggagatgtgcagagggtgaaggtgctgttcaacaagaag
gagaacgcgctggtacagatggccgatggcagccaggcccagctggccatgagccacctg
aacgggcacaaggtgcacgggaagcccgtgcgcatcaccctgtccaagcaccagaacgtg
cagctgccccgcgagggccaggaggaccagggcctgaccaaggactacggcaactcgccg
ctgcaccgcttcaagaagcccggctccaagaacttccagaacatcttcccgccctcggcc
acgctgcacctctccaacattccgccctccgtgtctgaggaggacctgaagcatctcttc
tccagcaacggtggcatggtcaagggcttcaagttcttccagaaggaccgcaagatggcg
ctgatccagatgggctccgtggaggaggcgatccaggccctcatggacctgcacaaccac
gacctgggcgagaaccaccacctgcgggtgtccttctccaagtccaccatctaa
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