Sorex fumeus (smoky shrew): 130022412
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Entry
130022412 CDS
T10594
Symbol
XAB2
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
sfum Sorex fumeus (smoky shrew)
Pathway
sfum03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sfum00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130022412 (XAB2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sfum03019
]
130022412 (XAB2)
03041 Spliceosome [BR:
sfum03041
]
130022412 (XAB2)
Messenger RNA biogenesis [BR:
sfum03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
130022412 (XAB2)
Spliceosome [BR:
sfum03041
]
Complex B
Other components
Prp19-related factors
130022412 (XAB2)
Complex C
130022412 (XAB2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
TPR_12
TPR_2
Suf
TPR_8
TPR_19
TPR_15
ARM_TT21_C
ARM_TT21
TPR_7
DUF5575_C
DHR-2_Lobe_A
Motif
Other DBs
NCBI-GeneID:
130022412
NCBI-ProteinID:
XP_055969140
LinkDB
All DBs
Position
Unknown
AA seq
858 aa
AA seq
DB search
MVAMARPSRTERSDLVFEEEDLPYEEEIMRNQFSVKCWLRYIEFKQGAPKPRLNQLYERA
LKLLPCSYKLWYRYLKARRAQVKHRCVTDPAYEDVNNCHERAFVFMHKMPRLWLDYCQFL
MDQGRVTHTRRTFDRALRALPITQHSRIWPLYLRFLRSHPLPETAVRGYRRFLKLSPESA
EEYIEYLKSSDRLDEAAQRLATVVNDERFVSKAGKSNYQLWHELCDLISQNPDKVQSLNV
DAIIRGGLTRFTDQLGKLWRSLADYYIRSGHFEKARDVYEEAVRTVMTVRDFTQVFDSYA
QFEESMIAAKMETASELGREEEDDVDLELRLARFEQLISRRPLLLNSVLLRQNPHHVHEW
HKRVALHEGRPREIINTYTEAVQTVDPFKATGKPHTLWVAFAKFYEDNGQLDDARIILEK
ATKVSFKQVDDLASVWCECGELELRHESYDQALRLLRKATALPARRAEYFDGSEPVQNRV
YKSLKVWSMLADLEESLGTFQSTKAVYDRILDLRIATPQIVINYAMFLEEHKYFEESFKA
YERGISLFKWPNVSDIWSTYLTKFIARYGGRKLERARDLFEQALDGCPPKYAKTLYLLYA
QLEEEWGLARHAMAVYERATRAVEPAQQYDMFNIYIKRAAEIYGVTHTRSIYQKAIEVLS
DEHAREMCLRFADMECKLGEIDRARAIYSFCSQICDPRTTGAFWQTWKEFEVRHGNEDTI
REMLRIRRSVQATYNTQVNFMASQMLKVSGSATGTVSDLAPGQSGLDDMKLLEQRAEQLA
AEAERDQPPRAQSKILFVRSDASREELAQLAQQANPEEIELDEEEDDDEMDLEPNEVRLE
QQSVPAAVFGSLKEEGPQ
NT seq
2577 nt
NT seq
+upstream
nt +downstream
nt
atggtggcgatggcgcggccgtcgcgtaccgagcggtcggacctcgtcttcgaggaagaa
gacctcccctatgaggaggaaatcatgcggaaccagttctccgtgaagtgctggctccgg
tacatcgagttcaagcagggcgcccccaagcccaggctcaatcagctgtacgaacgggcc
ctcaagctgctgccctgcagctacaaactctggtaccggtacctgaaggcacgccgggcg
caggtcaagcaccgctgtgtcactgatcccgcttacgaagatgtcaacaactgtcacgag
agggcttttgtgtttatgcacaagatgccgcgtctgtggctcgattactgccagttcctg
atggaccagggccgggtcacgcacacgcgccgcaccttcgatcgggcgctgcgggcgctc
cccatcacgcagcactcgaggatctggcccctgtacctgcgttttctgcgctcgcatccg
ctgcccgagacggccgtgcggggctaccggcgtttcctcaagctgagccccgagagcgcc
gaggaatacatcgaatacctgaagtccagcgaccggctggacgaggcggcacagcgcctg
gccacggtggtcaacgacgaacgattcgtgtccaaggctggcaagtctaattaccagctc
tggcacgagctctgcgacctcatctcccagaaccccgacaaggtgcagtccctgaacgtg
gacgccatcatccgcggcggcctcacccgcttcactgaccagctgggcaagctctggcgc
tcgctggccgattactacatccgaagcggccacttcgagaaggcccgggacgtttacgag
gaggccgtccgcaccgtgatgaccgtgcgcgacttcacccaagtgttcgacagctacgcg
cagttcgaggagagcatgatcgcggccaagatggagacggcgtcggagctgggccgggag
gaggaagatgacgtggacttggagctgcgccttgcccgcttcgagcagctcatcagccgg
cggcccctgctgctcaacagcgtcctgctgcgccagaacccgcaccacgtgcacgagtgg
cacaagcgcgtggccctgcacgagggccgcccccgcgagatcatcaacacctacacggag
gccgtgcagaccgtcgaccccttcaaggccacgggcaagccgcacacgctgtgggtcgcc
tttgccaagttctacgaggacaacgggcagctggacgacgcccgcatcatcctggagaag
gccaccaaggtgagcttcaagcaggtggacgacctggccagcgtgtggtgcgagtgtggc
gagctggagctgcggcacgagagctacgaccaggccctgcggctgctgcggaaggccacg
gcgctgccggcccgccgtgccgagtacttcgacggctccgagccggtgcagaaccgcgtg
tacaagtccctgaaggtgtggtccatgctggccgacctggaggagagcctgggcaccttc
cagtccaccaaggccgtgtacgaccgcatcctggacctgcgcatcgccacgccccagatc
gtcatcaactacgccatgttcctggaggagcacaagtacttcgaggagagcttcaaggcc
tacgagcgcggcatctcgctgttcaagtggcccaacgtgtccgacatctggagcacgtac
ctgaccaagttcatcgcccgctacggaggccgcaagctggagcgggcgcgggacctgttc
gagcaggcgctggacggctgcccccccaaatacgccaagaccctgtacctgctgtacgcg
cagctggaggaggagtgggggctggcccggcacgccatggccgtgtacgagcgggccacc
cgcgccgtggaacccgcgcagcagtacgacatgttcaacatctacatcaaacgcgcggcc
gagatctacggcgtcacgcacacgcgcagcatctaccagaaggccatcgaggtgctgtcg
gacgagcacgcgcgggagatgtgcctgcgcttcgccgacatggagtgcaagctcggggag
atcgaccgtgcccgcgccatctacagcttctgctcgcagatctgcgacccccggaccacg
ggggccttctggcagacgtggaaggagttcgaggtgcgtcacggcaacgaggacacgatc
cgcgagatgctgcggatccgccgcagcgtccaggccacctacaacacgcaggtcaacttc
atggcctcccagatgctcaaggtgtccggcagcgccacgggcacggtgtccgacctggcc
cccgggcagagcggcctggacgacatgaagctgctggagcagcgggcggagcagctggcc
gccgaggccgagcgtgaccagcccccgcgggcccagagcaagatcctgtttgtgaggagc
gacgcttcccgagaggagctggcccagctggcccagcaggccaaccccgaggagatcgag
ctggacgaggaggaggacgacgacgagatggacctggagcccaacgaggtgcgtctggag
cagcagagcgtgccagccgccgtgttcgggagcctgaaggaggaaggaccccaataa
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