Sorex fumeus (smoky shrew): 130022596
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Entry
130022596 CDS
T10594
Name
(RefSeq) collagen alpha-1(XIII) chain-like
KO
K16617
collagen type XIII alpha
Organism
sfum Sorex fumeus (smoky shrew)
Pathway
sfum04974
Protein digestion and absorption
Brite
Glycosaminoglycan binding proteins [BR:
sfum00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
130022596
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Other DBs
NCBI-GeneID:
130022596
NCBI-ProteinID:
XP_055969337
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Position
Unknown
AA seq
567 aa
AA seq
DB search
MSIIGPRGPPGQPGTRGFPGFPGPIGLDGRPGYSGPKGEMGPQGQKGEKGQCGEYPHRLL
PLLNSVRLAPPPVIKRRTFQGEQGQTGSQGPPGPPGPPGPSGLLGPPGLPGPMGPPGLPG
PPGPKGDPGVQGYHGRKGERGMPGMPGKHGAKGAPGIAVAGMKGEPGTPGAKGEKGTAGA
PGLVGLLGQKGEKGDAGNAIGGGRGEPGPPGLPGPPGPKGEAGAEGQAGAPGQPGNKGEP
GAAGAQGPAGPPGAKGEPGKGEMVGYNGNISEALQEIRTLALMGPPGLPGQIGPPGAPGT
PGQKGEIGLPGPPGHDGEKGPRGKPGDMGPPGPQGPPGKAGPAGTKGESGQTGSPGEKGA
TGEPGQAGSPGLDGPTGEKGEPGSPGRPGATGLPGPIGLPGFTGEKGEPGEKGDSGAELP
GPPGPEGPPGPPGLQGVPGPKGEVGREGAKGEQGIQGEKGDRGALGLPGASGLDGRPGPP
GTPGPTGVPGPAGPKGERGSKGDPGMTGPTGAAGLPGLHGPPGDKGNRGHRGFKGEKGEP
GLPGLDGLDAPCPLGEDGLPVQGCWNK
NT seq
1704 nt
NT seq
+upstream
nt +downstream
nt
atgtccatcatcggcccgcgtggcccccctggccagccaggcacccgaggcttccccgga
ttcccgggccctattggactggatggcaggccgggttactccggacccaaaggagagatg
ggccctcagggacagaaaggagaaaagggccagtgtggagagtacccgcaccggctgctg
cctcttctcaactccgtgcgcctggctccgcccccggtcattaagaggcgcaccttccag
ggcgagcagggccagacaggcagccaaggccccccaggcccgccggggccccctggacca
agcggcctcctggggcccccaggactgccaggccccatgggaccacctggcttacctgga
cctcctggacccaagggagaccctggagtccaaggctaccacggccggaagggagaaagg
ggcatgccagggatgccaggcaaacacggcgccaagggggcgccaggaatcgcagtggcc
ggaatgaagggtgagcctgggaccccaggagccaagggcgagaaggggactgcgggtgct
cccgggctcgtcgggctcctggggcagaagggagagaagggcgacgcgggcaacgccatt
ggaggaggcagaggggagcccggacccccaggactcccagggcccccggggccaaaggga
gaagctggcgctgagggccaggccggggccccgggacagccaggaaacaagggggagccc
ggagcagctggagcgcagggacccgccggccccccgggtgccaagggggagccaggcaaa
ggcgagatggtgggctacaacggcaacatcagcgaggcgctccaggagatccgcacgctg
gccctgatgggcccccctggtcttcccgggcaaatcggcccacctggcgctccagggacc
ccaggtcaaaagggggagatcgggctgccggggcctccaggccacgacggggaaaaggga
cctcgaggcaaacccggagacatgggcccgccgggcccccaaggccccccaggaaaggcc
gggcctgcaggcaccaagggagaaagcggacagacggggagcccgggagagaagggggcc
acgggggagccgggccaggcgggctcgccgggcctggatggcccaactggggagaaagga
gaaccaggcagcccagggagaccaggggccacaggactgcccggccccatcgggctgccg
ggattcacgggagagaaaggagagcccggggagaagggggactcgggagcagagcttcct
gggccacctgggccagaagggcctcccggacctcctggcctccagggtgttcctggacca
aagggggaagtgggacgggaaggagcgaagggagaacaaggcatccagggagaaaaagga
gaccgaggggcgctgggcctccccggagcttcaggtttggacggcaggcctgggccaccg
ggtactccgggaccaactggagttccaggcccagcgggaccaaagggagagaggggcagc
aaaggcgaccccggaatgacaggaccaacgggagcagccgggcttcctggtttacacgga
ccacctggggacaaaggaaaccggggacaccgaggttttaaaggagagaaaggggagccg
gggttgccggggctggacggactggatgccccgtgcccgctgggcgaagacggcttaccc
gtccagggctgttggaacaagtga
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