Sorex fumeus (smoky shrew): 130022696 Help Entry 130022696         CDS       T10594                                  Symbol VCL Name (RefSeq) vinculin isoform X1   KO K05700   vinculin Organism sfum  Sorex fumeus (smoky shrew) Pathway sfum04510   Focal adhesion sfum04517   IgSF CAM signaling sfum04518   Integrin signaling sfum04519   Cadherin signaling sfum04520   Adherens junction sfum04670   Leukocyte transendothelial migration sfum04810   Regulation of actin cytoskeleton sfum04820   Cytoskeleton in muscle cells sfum05100   Bacterial invasion of epithelial cells sfum05146   Amoebiasis Brite KEGG Orthology (KO) [BR:sfum00001]  09130 Environmental Information Processing   09133 Signaling molecules and interaction    04517 IgSF CAM signaling     130022696 (VCL)    04518 Integrin signaling     130022696 (VCL)    04519 Cadherin signaling     130022696 (VCL)  09140 Cellular Processes   09144 Cellular community - eukaryotes    04510 Focal adhesion     130022696 (VCL)    04520 Adherens junction     130022696 (VCL)   09142 Cell motility    04820 Cytoskeleton in muscle cells     130022696 (VCL)    04810 Regulation of actin cytoskeleton     130022696 (VCL)  09150 Organismal Systems   09151 Immune system    04670 Leukocyte transendothelial migration     130022696 (VCL)  09160 Human Diseases   09171 Infectious disease: bacterial    05100 Bacterial invasion of epithelial cells     130022696 (VCL)   09174 Infectious disease: parasitic    05146 Amoebiasis     130022696 (VCL)  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    04812 Cytoskeleton proteins [BR:sfum04812]     130022696 (VCL)    04147 Exosome [BR:sfum04147]     130022696 (VCL) Cytoskeleton proteins [BR:sfum04812]  Eukaryotic cytoskeleton proteins   Actin filaments / Microfilaments    Actin-binding proteins     Cross-linking proteins      130022696 (VCL) Exosome [BR:sfum04147]  Exosomal proteins   Exosomal proteins of other body fluids (saliva and urine)    130022696 (VCL) BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  Vinculin Talin_IBS2B VMAP-M0 Motif Other DBs NCBI-GeneID:  130022696 NCBI-ProteinID:  XP_055969460 LinkDB All DBs Position Unknown AA seq 1066 aa AA seqDB search MPVFHTRTIESILEPVAQQISHLVIMHEEGEVDGKAIPDLTAPVAAVQAAVSNLVRVGKE TVQTTEDQILKRDMPPAFIKVENACTKLVQAAQMLQSDPYSVPARDYLIDGSRGILSGTS DLLLTFDEAEVRKIIRVCKGILEYLTVAEVVETMEDLVTYTKNLGPGMTKMAKMIDERQQ ELTHQEHRVMLVNSMNTVKELLPVLISAMKIFVTTKNSKNQGIEEALKNRNFTVEKMSTE INEIIRVLQLTSWDEDAWASKDTEAMKRALASIDSKLNQAKGWLRDPGASPGDAGEQAIR QILDEAGKVGELCAGKERREILGTCKMLGQMTDQVADLRARGQGASPVAMQKAQQVSQGL DVLTAKVENAARKLEAMTNSKQSIAKKIDSAQNWLADPNGGPEGEEQIRGALTEARKIAE LCDDPKERDDIMRSLGEISALTSKLTDLRRQGKGDSPEARALAKQVATALQNLQSKTNRA VANSRPTKAAVHLEGKIEQAHRWIDNPTVDDRGVGQAAIRGLVAEGHRLANVMMGPYRQD LLAKCDRVDQLTAQLADLAARGEGESPQARALASQLQDSLKDLKAQMQEAMTQEVSDVFS DTTTPIKLLAVAATAPPDAPNREEVFDERAANFENHSGRLGATAEKAAAVGTANKSTVEG IQASVKTARELTPQVVSAARILLRNPGNQAAYEHFETMKNQWIDNVEKMTGLVDEAIDTK SLLDASEEAIKKDLDKCKVAMANIQPQMLVAGATSIARRANRILLVAKREVENSEDPKFR EAVKAASDELSKTISPMVMDAKAVAGNISDPGLQKSFLDSGYRILGAVAKVREAFQPQEP DFPPPPPDLDQLRLADELAPPKPPLPEGEVPPPRPPPPEEKDEEFPEQKAGEVINQPMMM AARQLHDEARKWSSKGNDIIAAAKRMALLMAEMSRLVRGGSGTKRALIQCAKDIAKASDE VTRLAKEVAKQCTDKRIRTNLLQVCERIPTISTQLKILSTVKATMLGRTNISDEESEQAT EMLVHNAQNLMQSVKETVREAEAASIKIRTDAGFTLRWVRKTPWYQ NT seq 3201 nt NT seq  +upstreamnt  +downstreamnt atgccggtgttccacacgcgcacgatcgagagcatcctggagccggtggcgcagcagatc tcgcacctggtgatcatgcacgaggagggcgaggtggacggcaaagccatccctgacctc accgcgcccgtcgccgccgtgcaggcggccgtcagcaacctggttcgggttggaaaagag actgttcagacgacagaggatcagatcttgaagagagatatgccaccagcatttattaag gttgagaacgcttgcaccaaactggtccaggctgcccagatgctgcagtcagacccttac tcagtgcccgcgcgggattatctcattgatgggtcaaggggaatcctctctggcacgtca gacctgctcctcaccttcgacgaggctgaggtgcgtaaaattattcgagtttgcaaagga attttggaatatcttacagtggcagaggtggtggagactatggaagatttagttacttac acgaagaatcttgggccaggaatgactaagatggccaaaatgatcgacgagaggcagcag gagctgacacaccaggagcatcgagtgatgctggtgaactcaatgaacaccgtcaaagag ttactgccggttctcatttcagctatgaagatttttgtaacaactaaaaactcaaaaaac caagggatagaagaagctttgaaaaatcgcaattttactgtagaaaagatgagtactgaa atcaatgagatcatccgggtgttgcagctcacatcttgggatgaagatgcgtgggccagc aaggacactgaagccatgaagagagcattggcctccatagactccaaactgaaccaggcc aaagggtggctccgtgaccccggcgcctccccaggggatgctggcgagcaggccatcaga cagatcttagatgaagctgggaaagttggtgagctctgcgcaggcaaagagcgcagggag atcctcggaacttgcaaaatgctggggcagatgaccgatcaagtggctgacctccgagcc agaggacaaggagcctcccctgtggccatgcagaaagcccagcaggtgtcccaggggctg gacgtgctcactgcgaaggtggagaatgccgcccgcaagctggaagccatgacaaactca aagcagagcattgcgaagaagatcgactccgctcagaactggcttgcagatccaaacggg gggccagaaggggaagaacagattcgaggggctttgactgaagctcggaaaatagcggaa ttatgtgatgatccaaaagagagggatgacatcatgcgttctcttggagagatttctgct ctgacttctaaattaacagacctgcgcagacaggggaaaggagattccccagaggcccga gcactggccaaacaggtggccactgccttgcagaacctgcagagcaaaaccaatagggcc gtggccaacagcaggcccaccaaggctgctgtccatcttgagggcaagatcgagcaagca catcggtggattgataaccccacagtggacgaccggggagttggtcaggctgccatccgg gggctggtggctgaagggcatcggctggctaatgtcatgatgggaccttatcgccaagat cttcttgcaaagtgtgaccgcgtggatcagctgacagctcagctggccgatctggctgcc agaggggaaggggagagcccccaggctagagcactggcgtctcagcttcaggattcattg aaggacctgaaagcccagatgcaggaggccatgacccaggaggtgtcagatgtcttcagt gataccacaacccccatcaagctgctggcggtggcggccactgcccctcccgatgctccc aacagggaagaggtgttcgacgaaagggcagctaactttgagaaccactcaggccggctt ggtgccacagcagagaaggcagccgctgttggaacagcaaataagtcgacagtggaaggt atccaggcgtcggtgaagaccgcccgagaactcactcctcaggtcgtctcagctgcccgc atcttacttaggaaccctggaaaccaggctgcttacgaacactttgagaccatgaaaaac cagtggatcgataatgtggagaagatgacagggttggtggacgaagccatcgacaccaag tctctgttggatgcttccgaagaagcgattaaaaaagacctggacaagtgtaaagtggcc atggctaacattcagccgcagatgctggtcgcaggggcaaccagcatcgctcgcagggcc aaccggatcctgctggtggccaagagggaagtggagaactcggaggaccccaagttcagg gaggccgtgaaagccgcctcggatgagctgagtaaaaccatctcgccaatggtgatggat gccaaggctgtggcaggcaacatctctgacccaggtctgcagaagagcttcctggactcg ggataccggatcctgggagcagtcgccaaggttcgagaagccttccagcctcaggagccc gacttccccccgccgccaccagacctcgaccagctccgattggcagatgagcttgctcct cccaaaccacctctgcctgagggtgaagttcctccgcccaggcccccgccgcccgaggag aaggatgaggagttccctgagcagaaagccggggaggtgatcaaccagcccatgatgatg gctgccaggcagctccatgatgaagcccgaaaatggtccagcaagggcaatgacatcatt gcagcagccaagcgcatggctctgctgatggctgagatgtctcggctggtaagagggggc agcggcaccaagcgggcactgatccagtgtgccaaggacattgccaaagcctccgatgag gtgactcggttggccaaagaagttgccaagcagtgcacggataagcggattagaaccaac ctcttgcaggtgtgtgaacgaattcccaccatcagcacccagctcaaaatcctgtcgaca gtgaaggccaccatgctgggccggaccaacatcagcgatgaggagtccgagcaggccaca gagatgctggttcacaatgcccagaacctcatgcagtctgtgaaggagaccgttcgtgaa gcggaagcagcttcaatcaaaatccgaacagatgctgggttcacactgcgttgggttcga aagactccctggtaccaataa

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