Sorex fumeus (smoky shrew): 130022708
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Entry
130022708 CDS
T10594
Symbol
DDX21
Name
(RefSeq) nucleolar RNA helicase 2
KO
K16911
ATP-dependent RNA helicase DDX21 [EC:
5.6.2.7
]
Organism
sfum Sorex fumeus (smoky shrew)
Brite
KEGG Orthology (KO) [BR:
sfum00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
sfum03009
]
130022708 (DDX21)
03036 Chromosome and associated proteins [BR:
sfum03036
]
130022708 (DDX21)
Enzymes [BR:
sfum01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
130022708 (DDX21)
Ribosome biogenesis [BR:
sfum03009
]
Eukaryotic type
Pre-60S particles
Helicases
130022708 (DDX21)
Chromosome and associated proteins [BR:
sfum03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
130022708 (DDX21)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
GUCT
Helicase_C
ResIII
CMS1
AAA_30
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
130022708
NCBI-ProteinID:
XP_055969494
LinkDB
All DBs
Position
Unknown
AA seq
778 aa
AA seq
DB search
MPGRLRSGAASESDGAMGSGDRARRPSEKKNKKEKPKPNKIEEAEEQEEVIFPKAKKIKR
KAEPSEVEISSLKSKKATKKEEPSPDDVSPSPDDMSPKSKSVKKKKESVEKNVNSPKTKK
VKIEEPSEEEIETPRPKKMKKEKEMNGEVGEKSPKIKNGFPHSGPDSNSSEAASEESNPE
LEQEMSVEQKEGAFSNFPISEDTIKLLKARGVTFLFPIQAKTFHHVYSGKDLIAQARTGT
GKTFSFAIPLIEKLLGELQDRKRGRAPQVLVLAPTRELANQVSRDFSDITKKLAVACFYG
GTPYGGQIERMRNGIDILVGTPGRIKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVE
EILSVAYKKDSEDNPQTLLFSATCPHWVFNVAKKYMKSSYEQVDLIGKKTQKAAITVEHL
AIKCHWTQRAAVIGDVIRVYSGFNGRTIIFTETKKEAQELSQSSSIKQDAESLHGDIPQK
QREITLKGFRNGDFGILVATNVAARGLDIPEVDLVVQSCPPKDVESYIHRSGRTGRAGRT
GICICFYQHKEEYQLVQVEQKAGIKFKRIGVPSATEIIKASSKDAIRLLDSVPPTAISHF
KQSAEKLIEEKGAVEALAAALAHISGATSVDQRSLINSQAGFVTMIMKCSIEMPNISYAW
KELKEQLGEDIDSKVKGMVFLKGKQGVCFDIPTATATEVQEKWHDSRRWQLSVATEQPEL
EGPKEGFRNFRGQRDGNRGFRGQRDRSRGFRGQRGGGGNKSSRFQNKGQKRSFSKAFG
NT seq
2337 nt
NT seq
+upstream
nt +downstream
nt
atgccggggagactgcggagcggcgcggcctcggagtccgacggggccatgggcagcggg
gacagggcgcgcaggccgagcgagaagaaaaataaaaaagaaaagccaaagcctaacaag
attgaagaggcagaagaacaggaagaagtcatttttcccaaagctaagaaaattaaaagg
aaagcagagccttctgaggttgaaatcagttcccttaagtccaaaaaggcaacaaagaaa
gaggagccttctccagatgacgtgtcgccttctccagatgacatgtctcctaaaagcaaa
agtgtgaaaaagaaaaaggagtctgtagaaaagaatgttaattctcctaaaaccaaaaag
gtaaaaatcgaggagccctccgaagaagaaatagaaactcctaggcccaaaaagatgaag
aaagaaaaagagatgaatggagaagttggggagaaaagtcccaaaataaagaatggattc
cctcattctggacctgattctaactccagcgaagctgccagtgaagaaagtaaccccgag
ttagagcaggaaatgtctgtggaacaaaaagaaggcgctttctctaactttcccatatct
gaagatactattaaacttctcaaagcacgtggggtgacattcctgtttcctatacaagca
aagacatttcaccatgtctatagtgggaaggacctaattgcacaggcacggacaggaact
ggcaagaccttctcctttgccatcccgttgatcgagaaacttctgggagaactgcaagac
cggaagagaggccgtgcccctcaggtactggttcttgcacccacaagggagttggcaaat
caagtgagcagagatttcagtgacatcacgaaaaagctggcagtggcttgtttttatggt
ggaactccttatggaggtcaaattgaacgcatgcggaatgggattgatatcctggttggg
acaccgggtcgtatcaaagaccacctacagaacggcaagttagatctcaccaaactgaag
catgttgtcttggatgaagttgaccagatgttggatatgggatttgccgatcaagtggaa
gaaatattaagtgtggcatataagaaagattcggaagacaatccccaaacactgctcttc
tctgcaacgtgtcctcactgggtgtttaacgttgctaagaagtacatgaagtcgtcctat
gaacaggtggacctgatcggtaaaaagactcagaaagcggcaataaccgtggagcatctg
gccatcaagtgtcactggacccaaagggcagcagttattggggacgtgatccgagtgtac
agcgggttcaatggacgcaccatcatcttcactgaaaccaagaaagaagcacaggagctg
tcccagagctcatccattaagcaggatgccgagtcattacatggagacattccacagaag
caaagagaaattaccctgaaaggtttcagaaatggcgattttggcattttggttgcaact
aatgttgccgcacgtgggttagacatccctgaggttgacctggttgttcaaagttgtcca
ccaaaagatgtggagtcctacattcatcgttctgggcgaacaggaagagctggaagaaca
gggatctgcatttgcttctaccagcacaaggaggagtatcagttagtccaagtggaacag
aaagcgggaattaaatttaaacgaatcggcgttccttctgcaacagagatcatcaaagct
tccagcaaagatgccatcaggcttttggattccgttcctcccacggccatcagtcacttc
aaacagtcggcagagaagctgatcgaggagaagggagccgtggaagccctggccgccgct
ctggcccacatttcaggcgccacctcagtggaccagcgctccttgatcaactcacaggcg
ggctttgtgaccatgatcatgaagtgctcgattgaaatgccaaacatcagttacgcgtgg
aaggagcttaaagagcagctgggcgaggacattgattccaaagtgaagggaatggtcttt
ctcaaaggaaagcagggtgtttgttttgacatcccgacggctacagcaacagaagttcag
gaaaaatggcacgattctcggcgctggcagctgtccgtggccacagagcagcccgagctg
gagggaccgaaggaagggttccggaacttccggggccagagggacgggaacagaggcttc
cggggacagcgggatagaagcagaggcttccggggacagcgaggaggtggcggcaacaag
agcagcaggtttcagaacaaaggccagaaacggagtttcagcaaagccttcggttag
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