Sorex fumeus (smoky shrew): 130024057
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Entry
130024057 CDS
T10594
Symbol
UPF2
Name
(RefSeq) regulator of nonsense transcripts 2 isoform X1
KO
K14327
regulator of nonsense transcripts 2
Organism
sfum Sorex fumeus (smoky shrew)
Pathway
sfum03013
Nucleocytoplasmic transport
sfum03015
mRNA surveillance pathway
Brite
Messenger RNA biogenesis [BR:
sfum03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
130024057 (UPF2)
mRNA cycle factors
P-body specific factors
130024057 (UPF2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Other DBs
NCBI-GeneID:
130024057
NCBI-ProteinID:
XP_055970669
LinkDB
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Position
Unknown
AA seq
1273 aa
AA seq
DB search
MPAERKKSASMEEKDSLLNNKEKDCGERRPVSSREKPKDEIKLTAKKEVIKVPEEKKKKL
EEDKRKKEDKERKRKEEEKVKVEEELKKKEEEEKKKHEEEERKQQEDEAKRQQEEAAAQM
KEKEESLQLHQEAWERHQLRKELRSKNQNAPDNRPEENFFSRLDSSLKKNTAFVKKLKTI
TEQQRDSLSHDFSGLNLSKYIAEAVASIVEAKLKISDVNCAVHLCSLFHQRYADFAPSLL
QVWKKHFEARKEEKTPNITKLRTDLRFIAELTIVGIFTDKEGLSLIYEQLKNIINADRES
HTHVSVVISFCRHCGDDIAGLVPRRVKSAAEKFNLNFPPGEIISPEKQQPFQNLLKEYFT
SLTKHLKRDHRELQNTERQNRRILHSKGELSEDRHKQYEEFAMSYQKLLANSQSLADLLD
ENMPDLPQDKPTPEEHGPGIDIFTPGKPGEYDLEGGIWEDEDARNFYENLIDLKAFVPAI
LFKDNEKSCQSKESNKDDSKGEVKESKDNKEVTNPDDLELELENLEINDDTLELEGGDEA
EDLTKKLLDEQEQEDEEASTGSHLKLIVDAFLQQLPNCVNRDLIDKAAMDFCMNMNTKAN
RKKLVRALFIVPRQRLDLLPFYARLVATLHPCMSDVAEDLCSMLRGDFRFHVRKKDQINI
ETKNKTVRFIGELTKFKMFTKNDTLHCLKMLLSDFSHHHIEMACTLLETCGRFLFRSPES
HLRTSVLLEQMMRKKQAMHLDARYVTMVENAYYYCNPPPAEKTVKKKRPPLQEYVRKLLY
KDLSKVTTEKVLRQMRKLPWQDQEVKDYVICCMINIWNVKYNSIHCVANLLAGLVLYQED
VGIHVVDGVLEDIRLGMEVNQPKFNQRRISSAKFLGELYNYRMVESAVIFRTLYSFTSFG
VNPDGSPSSLDPPEHLFRIRLVCTILDTCGQYFDRGSSKRKLDCFLVYFQRYVWWKKSLE
VWTKDHPFPIDIDYMISDTLELLRPKIKLCDSLEESIRQVHDLEREFLIKLGLVNDKDSK
DSMPEGENLDDDEEEEEGGAETEEQSGNESEVNDPEEEEGSDNDDDEGEDEEEENTDYLT
DSNKENETDEENTEVMIKGGGLKHVPCVEDEDFIQALDKMMLENLQVQRSGESVKVHQLD
VAIPLHLKSQLRKGPPLGGGEGEAESADTMPFVMLTRKGNKQQFKILNVPMSSQLAANHW
NQQQAEQEERMRMKKLTLDINERQEQEDYQEMLQSLAQRPAPANTNRERRPRYQHPKGAP
NADLIFKTGGRRR
NT seq
3822 nt
NT seq
+upstream
nt +downstream
nt
atgccagctgagcgtaaaaagtcagcaagtatggaagaaaaagattctttactaaacaac
aaggaaaaagactgcggtgaaaggcgaccagtaagcagtagggagaaaccaaaagacgag
atcaagctcactgccaagaaggaggttattaaggtccctgaagagaaaaagaagaaactg
gaagaagataagcgaaaaaaagaagacaaggaacgcaagagaaaagaagaagaaaaggtg
aaggtagaagaggagttaaagaaaaaagaggaagaagaaaaaaagaaacatgaagaggaa
gagagaaaacagcaagaagacgaggcaaaacgacagcaagaggaagcagcggcccagatg
aaagagaaagaagaatcccttcagcttcatcaggaagcttgggaacgacatcagctaagg
aaggaacttcgtagcaaaaaccaaaatgctccagataaccgaccggaggaaaacttcttt
agccggctggactcgagcttgaagaaaaatactgcttttgtgaagaaactaaaaactatt
acggaacagcagagagactccttgtctcatgacttcagtggcctgaatctgagcaagtac
attgccgaggccgtggcgtccatcgtggaggccaagctgaagatctccgacgtgaactgt
gccgtgcacctgtgctctctcttccaccagcgctacgccgactttgccccatccctcctg
caggtctggaagaagcattttgaagcaaggaaagaggagaaaaccccgaatatcaccaag
ttaagaaccgatctgcgttttattgcagaattgacaatagttgggattttcactgataag
gaagggctttccttaatctatgaacagctaaaaaatattattaatgctgatcgagaatcc
catactcacgtgtctgtggttatcagcttttgtcgacattgtggcgatgacattgctggg
cttgtaccaaggagagtgaagagcgctgcagagaagtttaatttgaattttcctcctggt
gagataatcagtccagagaaacagcagcctttccagaaccttttaaaagaatactttacg
tctttgaccaaacacctgaaaagggaccacagggagctacagaatactgagagacaaaac
aggcgtattctgcattctaaaggggagctaagtgaagacagacacaaacagtatgaagaa
tttgccatgtcttaccagaagctgcttgcaaactctcagtccttagcagatctcttggat
gaaaatatgccagatttgcctcaagacaagccaacaccggaggagcatggacctggaatt
gatatatttactccggggaaacccggagaatatgacttggaaggtgggatatgggaagat
gaagacgctcggaacttttacgaaaaccttattgatctgaaggcttttgttcctgccatc
ttgtttaaagataatgaaaaaagttgtcagagtaaagagtcgaacaaagatgattctaaa
ggagaggtgaaagaatctaaggataataaggaggttacaaatcctgatgatttggaactt
gaattggagaaccttgaaattaatgacgacactttggagttagagggtggagatgaagcc
gaagatctcacaaagaagcttcttgatgagcaagaacaagaggatgaagaagccagcact
ggatctcatctcaagctcatagtagatgcttttctccagcagttgcccaactgtgtcaac
cgagatctgatcgacaaggcagcaatggacttttgcatgaacatgaacacaaaagcaaat
agaaagaagttggtacgggcactctttatagttcccagacaaaggttggacttgctacca
ttctatgcaagattggttgctacattgcatccctgcatgtctgatgtagcagaggatctt
tgttccatgctgaggggggatttcagattccatgtacgaaaaaaggaccagatcaatatt
gaaacaaaaaataaaactgttcgttttattggagaacttactaagtttaagatgttcacc
aaaaatgacacactccattgtttaaagatgcttctgtccgacttttcccatcaccatatt
gaaatggcgtgtaccctactggaaacatgtggaagatttcttttcagatctccagaatca
cacttgaggaccagtgtactcttggaacaaatgatgagaaagaaacaagcaatgcatctc
gatgcaaggtacgtcacgatggtggagaatgcttattactattgcaaccctcccccggct
gagaaaacggtgaagaaaaagaggcctccgctccaggagtatgtccggaaactgctgtac
aaggacctctccaaggtcaccactgagaaggttttgagacagatgcgcaaattaccctgg
caggaccaagaagtgaaagactatgtcatttgttgtatgataaacatctggaacgtgaaa
tataacagcattcactgtgtggccaacctcctggcagggctggtgctgtatcaggaggat
gttggaatacacgttgtggatggggttttagaggatattcggttaggaatggaggttaat
cagccaaaatttaatcagagacgtatcagcagtgccaagttcctaggagaactttataat
taccgaatggtggaatcagctgttatctttcgaactctttattcctttacttcgtttggt
gtcaaccctgatggctcgccgagctcgctggaccctccagagcatctcttccgaattcga
ctagtctgcactattttggacacctgcggccagtacttcgacagaggctccagcaaacga
aaacttgattgcttccttgtatattttcagcgttacgtttggtggaagaaaagtctggag
gtttggacaaaagaccacccatttcctattgacatagattacatgatcagtgatactctt
gagctgcttagaccaaagatcaagctctgcgattctctggaagaatccatcaggcaggtg
cacgacttggaacgagaattcttaataaaactaggcctcgtaaatgataaggattccaaa
gattcgatgccagaaggggagaaccttgatgacgatgaggaagaagaggagggaggagct
gaaacggaggagcagtctgggaacgagagtgaagtgaacgacccggaagaagaggagggt
tctgataacgacgatgatgaaggagaggacgaagaggaggagaacacagattaccttaca
gactccaataaggagaatgaaactgatgaagagaatacggaggtaatgattaaaggaggt
ggacttaaacatgtgccgtgtgtggaagatgaagacttcattcaagctctggataagatg
atgctagagaatctccaggtacaacggagtggtgagtctgttaaagtgcaccagctggat
gtcgccattcccttgcacctcaaaagccagctgaggaaagggcccccccttggtgggggg
gagggagaggcggagtctgcagatacgatgccgtttgtcatgctaacaagaaaaggcaat
aagcagcagttcaagatccttaatgtccccatgtcttcccaacttgctgcgaatcactgg
aatcaacagcaggcggagcaagaggagaggatgagaatgaagaagctcactctcgacatc
aacgaacggcaggagcaggaagattaccaagagatgttgcagtctctcgcccagcgcccg
gctccagccaacaccaaccgggagcggcggcctcgctaccaacatcccaagggagcacct
aatgcggatctaatctttaagactggcgggaggagacgctga
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