KEGG   Sorex fumeus (smoky shrew): 130024744
Entry
130024744         CDS       T10594                                 
Symbol
ALYREF
Name
(RefSeq) THO complex subunit 4
  KO
K12881  THO complex subunit 4
Organism
sfum  Sorex fumeus (smoky shrew)
Pathway
sfum03013  Nucleocytoplasmic transport
sfum03015  mRNA surveillance pathway
sfum03040  Spliceosome
sfum05014  Amyotrophic lateral sclerosis
sfum05168  Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:sfum00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    130024744 (ALYREF)
  09122 Translation
   03013 Nucleocytoplasmic transport
    130024744 (ALYREF)
   03015 mRNA surveillance pathway
    130024744 (ALYREF)
 09160 Human Diseases
  09172 Infectious disease: viral
   05168 Herpes simplex virus 1 infection
    130024744 (ALYREF)
  09164 Neurodegenerative disease
   05014 Amyotrophic lateral sclerosis
    130024744 (ALYREF)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sfum03019]
    130024744 (ALYREF)
   03041 Spliceosome [BR:sfum03041]
    130024744 (ALYREF)
Messenger RNA biogenesis [BR:sfum03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     130024744 (ALYREF)
    TREX complex
     130024744 (ALYREF)
Spliceosome [BR:sfum03041]
 Complex C
  Other components
   EJC/TREX
    130024744 (ALYREF)
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    130024744 (ALYREF)
SSDB
Motif
Pfam: RRM_1 FoP_duplication F07F6_N
Other DBs
NCBI-GeneID: 130024744
NCBI-ProteinID: XP_055971442
LinkDB
Position
Unknown
AA seq 254 aa
MADKMDMSLDDIIKLNRSQRGGRGGGRGRGRAGSQGRGGGVQAAARVGRGGGPVRNRAAL
ARGAAGGGGRNRPAPYSRPKQLPDKWQHDLFDSGFGAGAGVETGGKLLVSNLDFGVSDAD
IQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLV
TSQIDTQRRPAQSINRGGMTRNRGAGGFGGGVRRGARGGSRGRGRGTGRSSKQQLSAEEL
DAQLDAYNARMDTS
NT seq 765 nt   +upstreamnt  +downstreamnt
atggccgacaagatggacatgtctctggacgacatcatcaagctgaaccggagccagcgg
ggcggccgcggcgggggccggggccgcggccgcgccggctcgcagggccgcggcggcggc
gtgcaggcagccgcgcgggtgggccgcggcggcgggccggtccggaaccgggcggctctg
gcccgcggcgcggcgggcggcggcggcaggaatcggccggcgccctacagccggcccaag
cagctccccgataagtggcagcacgacctgttcgacagcggcttcggggccggcgccggc
gtggagacaggcgggaagctgctggtgtctaacctggacttcggcgtgtcggacgctgac
atccaggagctgttcgccgagttcgggacactgaagaaggcggctgtgcactacgatcgc
tcgggccgcagcctgggcaccgccgacgtgcacttcgagcggaaggcggacgcgctgaag
gccatgaagcagtacaatggggtgcccctggacggccgccccatgaacatccagctcgtc
acgtcacagatagacacacagcggagacccgcccagagcataaatagaggcgggatgact
aggaaccgcggggctggaggcttcggtggcggggtccggagaggagcccgcgggggcagc
cggggccggggccggggcaccggccggagctccaagcagcagctttctgcagaggagctg
gacgcacagctggacgcctacaatgccaggatggacaccagctaa

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