Sorex fumeus (smoky shrew): 130024847
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Entry
130024847 CDS
T10594
Symbol
USP39
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase 39
KO
K12847
U4/U6.U5 tri-snRNP-associated protein 2
Organism
sfum Sorex fumeus (smoky shrew)
Pathway
sfum03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sfum00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130024847 (USP39)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sfum03041
]
130024847 (USP39)
Spliceosome [BR:
sfum03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP specific factors
130024847 (USP39)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UCH
zf-UBP
UCH_1
zf-UBP_var
Motif
Other DBs
NCBI-GeneID:
130024847
NCBI-ProteinID:
XP_055971631
LinkDB
All DBs
Position
Unknown
AA seq
565 aa
AA seq
DB search
MSGRSKRESRGSTRGKRETETRSSSGRVKRERDRERESEVPSSRSSPVRVKREVEAASAR
EAPAPVVPAVRVKREREADEDSEPEREVRAKNGRVDSEDRRSRHCPYLDTINRSVLDFDF
EKLCSISLSHINAYACLVCGKYFQGRGLKSHAYIHSVQFSHHVFLNLHTLKFYCLPDNYE
IIDSSLEDITYVLKPTFTKQQISNLDKQAKLSRAYDGTTYLPGIVGLNNIKANDYANAVL
QALSNVPPLRNYFLEEDNYKNIKRPPGDIMFLLVQRFGELMRKLWNPRNFKAHVSPHEML
QAVVLCSKKTFQITKQGDGVDFLSWFLNALHSALGGTKKKKKTIVTDVFQGSMRIFTKKL
PHPDLPAEEKEQLLHNDEYQETMVESTFMYLTLDLPTAPLYKDEKEQLIIPQVPLFNILA
KFNGITEKEYKTYKENFLKRFQLTKLPPYLIFCIKRFTKNNFFVEKNPTIVNFPITNVDL
REYLSEEVQAVHKNTTYDLIANIVHDGKPSEGSYRIHVLHHGTGKWYELQDLQVTDILPQ
MITLSEAYIQIWKRRDNDETNQQGA
NT seq
1698 nt
NT seq
+upstream
nt +downstream
nt
atgtcaggccggtccaaacgggagtctcgtggttcgacccgcgggaagcgcgagacggag
acgcggagcagctcgggtcgggtcaagcgggaacgcgaccgggagcgggagagcgaggtg
ccgagctcccggagcagcccggtgcgcgtgaagcgggaggtcgaagcggccagtgcgcgc
gaggccccggcgcccgtcgtcccggcggtgcgggtgaagcgggagcgcgaggccgatgag
gattcggagcccgagcgggaggtgcgagcaaagaatggccgggtggattccgaggatcga
aggagtcgacactgcccgtacctggacaccattaacaggagtgtgctggactttgacttt
gagaagctgtgttccatctcgctctcccatataaatgcatatgcctgtctggtgtgtggc
aagtactttcagggccggggtttgaagtctcatgcctacattcacagcgtccaatttagc
caccacgttttcctaaacctccataccctcaagttttactgcctcccagacaactatgag
attattgattcctcgctggaggatatcacgtatgtgttgaagcccacttttacaaagcaa
cagatttcaaacttggacaagcaagcgaaattgtcccgggcatatgatggcaccacctac
ctgccgggtattgtgggtctgaataatataaaggccaatgactatgccaacgctgtcctt
caggccctgtctaatgttcctcctctccggaactacttcctggaagaagacaactataag
aacatcaagcgtcctcctggggacatcatgtttttgttggtccagcggtttggagagcta
atgagaaagctctggaatcctcggaatttcaaggctcatgtctctccccatgagatgctg
caggctgttgttctttgcagcaagaagacttttcagatcaccaagcagggggatggagtt
gactttctgtcttggttcctgaatgctctacactcagctctgggaggcacaaaaaagaaa
aagaagaccatcgtgactgacgttttccaggggtccatgaggatcttcaccaaaaagctt
ccccatccagatctgccagcggaagagaaagagcagctgctgcataatgacgagtaccag
gagacgatggtggagtccaccttcatgtacctgacgctggacctgcccactgcgcccctc
tacaaggatgagaaggagcagctcatcatcccgcaggtgccgctcttcaacatcctggcc
aagttcaacggcatcaccgagaaggaatataagacctataaagagaactttctgaagcgt
ttccagcttaccaagttgcctccgtatctaatcttttgtattaaaagatttactaagaac
aatttttttgtggagaagaatccaacaattgtcaacttcccgattacgaacgtggatctg
agagagtacttgtctgaggaggtgcaggcagtgcacaagaacaccacctacgacctcatc
gccaacattgtccatgacggcaaaccctccgagggctcctaccggatccacgtgctccac
catggtacaggaaaatggtatgaattacaagaccttcaggtgactgacatccttccccag
atgatcaccctctctgaggcttacattcagatttggaagaggcgggataacgatgaaacc
aatcagcagggggcttga
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