Sorex fumeus (smoky shrew): 130025137
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Entry
130025137 CDS
T10594
Symbol
NUP98
Name
(RefSeq) nuclear pore complex protein Nup98-Nup96 isoform X1
KO
K14297
nuclear pore complex protein Nup98-Nup96
Organism
sfum Sorex fumeus (smoky shrew)
Pathway
sfum03013
Nucleocytoplasmic transport
sfum05014
Amyotrophic lateral sclerosis
sfum05164
Influenza A
Brite
KEGG Orthology (KO) [BR:
sfum00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
130025137 (NUP98)
09160 Human Diseases
09172 Infectious disease: viral
05164 Influenza A
130025137 (NUP98)
09164 Neurodegenerative disease
05014 Amyotrophic lateral sclerosis
130025137 (NUP98)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sfum03019
]
130025137 (NUP98)
03036 Chromosome and associated proteins [BR:
sfum03036
]
130025137 (NUP98)
Messenger RNA biogenesis [BR:
sfum03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
130025137 (NUP98)
Chromosome and associated proteins [BR:
sfum03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
130025137 (NUP98)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Nup96
Nucleoporin2
Nup98_GLEBS
Nucleoporin_FG
Motif
Other DBs
NCBI-GeneID:
130025137
NCBI-ProteinID:
XP_055972045
LinkDB
All DBs
Position
Unknown
AA seq
1817 aa
AA seq
DB search
MFNKSFGTPFGGGTGGFGTTSTFGQNTGFGTTSGGAFGTSAFGSSNSTGSLFGNSQTKPG
GLFGTSSFNQPATSTSTGFGFGTSTGTSNSLFGTASTGTSLFSTQTNAFAQNKPTGFGNF
GTSTSSGGLFGTTNTTSNPFGSSSGSLFGPSSFTAAPTGTTIKFNPPTGTDTMVKAGVST
NISTKHQCITAMKEYESKSLEELRLEDYQANRKGPQNQVGAGSTTGLFGSSPATSSATGL
FSSSTTNSGFAYGQNKTAFGTSTTGFGTNPGGLFGQPNQPTTSLFSKPFGQTTSTPNTGF
SFGNTSTLGQPSTNTMGLFGVTQASQPGSLFGTATNTSTGTPFGTGTNLFGQTSTGFGAV
GSTLFGNNKLTTFGTSTTSAPSFGTANGGIFGNKPTLTLGTNTNTSNFGFGTNTSGTTLF
GNKPGPGTLGAGLSTGFGTALGAGQASLFGNNQPKIGGPLGTGAFGAPGFSATTATLGSG
APQAPVALTDPNASAAQQAVLQQHINSLTYSPFGDSPLFRNPMSDPKKKEERLKPTNPAA
QKALTTPTHYKLTPRPATRVRPKALQTTGSAKSQLFDGLDDDEPSLANGAFMPKKSIKKL
VLKNLNNSNLFSPVNRDSEDLASPSDYPENGERFNFLNKSVDENHQQDGDDDSLVSRFYT
NPIAKPIPQTPESAGNKHNSSGSMDDTIVALNMRAALRNGLEGSSEETSFHEESLQDDRD
EIENNSYHMHPAGIILTKVGYYTIPSMDDLAKITNDKGECIVSDFTIGRKGYGSIYFEGD
VNLTNLNLDDIVHIRRKEVIVYLDDNQKPPVGEGLNRKAEVTLDGVWPTDKTSRCLIKSP
DRLADINYEGRLEAVSRKQGAQFKEYRPETGSWVFKVSHFSKYGLQDSDEEEEERPSKAC
AKKLKTAPLPPPGQTAPFQMSLNGKPAPPPQSQSPEVEQLGRVVELDSDMVDITQEPVLD
SMLEENIPEDQEPVSASTHIASSLGINPHVLQIMKASLLADEEDVDMALDQRFSRLPSKA
DTSQEICSPRLPISASHSSKSRSLVGGLLQSKFTSRAFLSPSASVQEIRTPRASSLKNVP
SSSSWSVPPPLTSVFTVPSPAPEVQLKTVGTRRQPGLVPLEKSVTYGKGKLLMDMALFMG
RSFRVGWGPNWTLANSGEHLSDSPDQENQQITDSMEYGFLPNPVSVKSLTESPFKVHLEK
LSLRQRNLEEDLQLYQTPLELKLKHSTVHVDELCPLIAPNPGVAVIHDYADWVKEASADA
PEAQIVKHWSLTWTLCEALWGHLKELDGQLDEPSDYIQILERRRAFSRWLSQTSAPQIEQ
EVSLTRKDNPIEAVFSYLTGKRISEACSLAQQSGDHRLALLLSQLVGSQSVRELLTMQLV
DWHQLQADCFIQDERLRIYALLAGKPVWQLSEQKQINVCSLLDWKRSLAVHLWYLLPPTA
SISRALSMYEEAFQNTSQSDSYACSPLPSYLEGSGCIIEDEQDSRPLQDVCFHLLKLYSD
RHYELNQLLEPRSITADPLDYRLSWHLWEVLRALNYNHLSEQCEGILHASYAGQLENEGL
WEWAIFVLLHISNSSMREKAVRELLTRHCQLEETPESWAKEAFLTQKLCVPAEWIHEAKA
VRAHMESDRHLEALYLFKAGHWNHCHKLVIRHLASDAIINENYDYLKGFLEDLAPPERSG
LIQDWETAGLVYLDYIRVMEMLHHIQQVECSSYELEQLNTKVTSLCIRIEQIHCYNVKDR
LAQSDMAKRIANLLRVVLSLQLTPDATSDSAPPDHQRVPLRLLAPHIGRLPLPEDYALEE
LRSLTQSYLRELTVGSQ
NT seq
5454 nt
NT seq
+upstream
nt +downstream
nt
atgtttaataaatcatttggaacaccctttgggggtggtacaggtggctttggcacaact
tctacatttggacagaatactggcttcggcaccactagtggaggcgcatttggaacatct
gcatttggttctagcaacagtactggaagcctctttggaaattcacagaccaaaccagga
ggattatttggtaccagttcatttaaccagccagctacatccacaagtactggttttggg
tttggtacatcaacagggacatcaaatagtttatttggaactgcaagcacagggaccagt
ctcttctcaacccagaccaatgcctttgcacaaaataaacccactggctttggaaatttt
ggaacaagtacaagcagtggtggcctttttggaactacaaataccacctctaaccctttt
ggtagttcctctggctccctcttcgggccaagtagttttacagctgcacctactggcact
acaattaaatttaatcctccaactggtacagatactatggttaaagcaggagttagcact
aacatcagtaccaagcaccaatgtattactgctatgaaggaatatgaaagcaaatcatta
gaggaacttcgtttagaggattatcaggctaatcggaaaggtccccagaaccaggtggga
gcaggtagcacaactggcttgtttggttcttccccagctacttccagtgcaacaggcctc
ttcagttcctctactactaattcaggctttgcatatggacagaacaaaacagcctttgga
actagtacaactggatttgggacaaatccaggtggcctctttggacagccgaaccagcca
actaccagccttttcagcaaaccatttggccagaccacatctactccgaacactggtttt
tcctttggtaataccagtacactcggacagccaagcaccaacaccatgggtttgtttgga
gtaacccaagcctcacaacctggaagtctttttggaacagctacgaacaccagcactggg
acaccatttggaacaggaacaaatctctttgggcagaccagtactggatttggtgctgtt
ggttcgaccctgtttggcaataacaagctcactacgtttggaaccagcacaaccagtgct
ccttcatttggtacagccaatggcgggatctttggtaacaaaccaactctgactttagga
accaatacaaacacttccaattttggttttggcacaaatactagtggaacaactcttttt
ggaaataaaccaggacctggaacgctgggagctgggcttagtacaggatttggaacagct
cttggtgctggacaggcatctttgtttgggaacaaccaacctaagatcggaggccccctt
ggtacaggagcctttggggcccctggatttagtgccacgacagcaactttgggctctgga
gccccacaggctccagtagctttgacagatccaaatgcatctgctgcgcagcaagctgtt
ctccagcagcacatcaacagtctaacatactcaccttttggagactctccgctgttccgc
aatcccatgtcagacccaaagaagaaagaagagcgattgaaaccaacaaatccagcagcc
cagaaggcactcactacacccactcactataagttgactccccgccctgccaccagagtt
cgaccaaaggccttacaaaccacaggctcagccaagtcgcagctttttgatggactggat
gatgatgaaccatccttagctaatggagcattcatgcccaagaagagcatcaaaaagttg
gttttgaaaaaccttaacaatagcaatctcttttctcctgttaatcgtgattcagaagat
ttagcttcaccatctgattatccagaaaatggagagaggtttaatttcctgaacaaatct
gttgatgagaatcatcagcaggatggagatgatgattctcttgtatcacgtttttatact
aaccctattgccaaacccattcctcaaaccccagagagtgctggaaataagcacaacagc
agcggcagcatggacgataccatcgttgcgttgaatatgcgtgctgccttacgaaatgga
ctggaaggaagcagtgaagagacctcttttcatgaggagtcattgcaggacgaccgagat
gaaatagaaaacaatagttaccatatgcatccagcaggtattattcttaccaaagttggt
tactatactattccgtctatggatgaccttgctaaaataaccaatgataaaggagaatgc
attgtttctgacttcaccattggtcgtaaaggttatggttcaatctattttgaaggagat
gtgaacttgacaaatctaaatttggatgatattgtacatatccgacggaaagaagtgatt
gtatacttagatgataaccaaaaaccacctgtgggtgaagggctgaataggaaggctgaa
gttacactggatggagtttggccaactgacaaaacatcacgttgtttaataaagagccca
gatcgacttgctgatatcaattatgaaggaagattggaagcagtttcaaggaaacaggga
gctcagttcaaagagtaccgtcctgaaactggttcatgggtgtttaaggtctcccatttt
tctaaatatggccttcaggattctgatgaagaggaggaggaacggccttccaaagcctgt
gcaaagaagttgaagactgcccctttgcctcctccaggccagactgccccatttcagatg
tcccttaatggcaaaccagcaccaccaccccagagccagagtccagaggtggaacaatta
gggagagtcgtagaactggacagtgacatggtggatatcacgcaggagccagttctggat
tccatgttggaagagaacatacctgaggatcaggaacctgtatctgcctcaacacacatt
gcatcttcactgggaattaatccacatgtcttacagatcatgaaagcatcattgcttgct
gacgaagaagatgtggacatggctctggatcaacgcttcagccgccttccctctaaagca
gatacttcccaagaaatctgttctcccagacttcccatttccgcatctcactcatcaaaa
tcccgttcattagttggtggattactgcaatcaaaatttacaagtagagcttttctttca
ccaagtgcctctgtgcaagagattcgtacacctcgagcatcatctttgaagaatgttcca
tcctcatcctcttggtccgtcccaccacctctgacctctgtgtttacagtgcccagccca
gccccagaggttcagttgaaaacagtgggtacacgcagacaaccaggccttgtcccactc
gaaaaatctgtcacctatggcaagggaaaattactaatggacatggctctgtttatggga
cgctcgtttcgggttggttggggccccaactggactctcgctaacagtggtgaacacctg
agtgactctcctgatcaggaaaatcaacagattactgactctatggaatatggatttctg
cccaatccagtatctgttaaatccctgactgagtccccattcaaggttcatttggagaag
ctcagtttgcgacaaaggaacctggaggaagacctgcagttatatcagacaccattggag
ctcaaactcaaacatagcacggtccatgtggatgagctgtgtccccttattgcccctaac
ccaggagtggctgtcattcatgactatgcagattgggtgaaggaagcatcagcagacgcg
ccggaagcacagattgtgaagcactggagcctaacatggacattatgtgaagctctgtgg
ggccacctgaaggagcttgacggtcagctggatgagcccagtgactacattcagattctt
gaacgaagaagagctttctctcgctggctttctcagacatctgcacctcagattgagcag
gaagtctccttaactagaaaagataaccctatcgaggctgtctttagctacctcacgggc
aagaggatcagtgaggcctgttctttggcccagcaatcaggtgatcatcgtcttgccctt
cttttgtctcagttggtcggcagtcagtcggtccgggagctgcttaccatgcagctagtg
gattggcatcagctgcaggctgactgcttcattcaggatgagagactgcgcatctatgcc
ttactggctggaaaaccggtgtggcagctctcagagcagaagcaaatcaatgtgtgctcc
ctgctggactggaagcgctccctggctgtgcatctttggtatttgcttccaccaacagcc
tccatttccagagcactcagcatgtatgaagaagcgtttcagaatacctctcagagtgac
agttatgcctgctccccacttccttcttacctggagggttccggctgtataatagaagac
gagcaagactcaaggccacttcaagacgtttgttttcaccttctaaagctgtacagtgac
agacattatgaactcaaccagctgctggagcctcgaagcataaccgcagaccccttggac
taccgcctcagctggcacttgtgggaggtgctccgggctcttaactataaccatctgtca
gagcagtgtgaaggtatactgcatgccagttatgctggccagctggaaaacgagggcctc
tgggagtgggccatctttgtcctcctgcacattagcaactcaagcatgcgtgagaaggcc
gttcgcgagctgctgacccggcactgccaactggaggagacccctgagtcttgggctaaa
gaagctttcctgacccagaagctttgtgtgcctgcggaatggatccacgaggccaaagct
gtgcgggcacacatggaatcagacaggcacctggaggccctctacttatttaaggccggc
cactggaaccactgccacaaactcgtcatccggcacttagcttctgatgccatcattaat
gagaactatgactacctgaaggggtttttggaagacctggcgcctccagaacgcagtggt
ctgatccaggactgggaaacagctgggcttgtttacctggactatattcgggtcatggaa
atgctacaccacatacaacaggtggaatgctcaagctatgagttagagcagttaaacacc
aaagtgacctcactgtgcatacggatagagcagatccattgttacaatgtcaaggaccgc
ctggcccagtcggatatggccaaacgtatagccaacctgctccgggtcgtactgagcctc
cagctgacccctgacgcaacctctgattcagcgccgccagaccatcaacgcgtccctttg
cgcctgctggctccccacataggccggctccccctgcctgaggactatgccttggaggaa
ctgcgcagtctcacgcagtcctacctgcgagaactgactgttggaagccagtga
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integrated database retrieval system
