Sorex fumeus (smoky shrew): 130025316
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Entry
130025316 CDS
T10594
Symbol
PCF11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
sfum Sorex fumeus (smoky shrew)
Pathway
sfum03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sfum00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
130025316 (PCF11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sfum03021
]
130025316 (PCF11)
03019 Messenger RNA biogenesis [BR:
sfum03019
]
130025316 (PCF11)
Transcription machinery [BR:
sfum03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
130025316 (PCF11)
Messenger RNA biogenesis [BR:
sfum03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
130025316 (PCF11)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PCF11_RFEG_rpt
PCF11_charged
Pcf11_helical
CID
Pfc11_Clp1_ID
Pcf11_C
zf_PCFS4
SHOCT
Motif
Other DBs
NCBI-GeneID:
130025316
NCBI-ProteinID:
XP_055972249
LinkDB
All DBs
Position
Unknown
AA seq
1674 aa
AA seq
DB search
MSEAAPAEAGPAGAREDACRDYQSSLEDLTFNSKPHINMLTILAEENLPFAKEIVSLIEA
QTAKAPSSEKLPVMYLMDSIVKNVGREYLTAFTKNLVATFICVFEKVDENTRKSLFKLRS
TWDEIFPLKKLYALDVRVNSLDPAWPIKPLPPNVNTSSIHVNPKFLNKSPDEPSTPGTVV
SSPTISTPPVVPDLQKNLTQEQLIRQQLLAKQKQLLELQQKKLELELEQAKAQLAVSLSV
QQETSNLGPGSAPSKLHVSQIPPMVVKAPHQVPVQPEKSRPGPSLQIQDLKGTNRDPRLN
RMSQHSSHGKDQSHRKDFLMNTLNQSDIKATKTVPSEKINSSKQEKSKSGEKINKKELDQ
LDSKSKSKSKSPSPLKNKLSHTKDLKNQETESTRVSDMSKRDPRLKKHLQDKIDNKDDDL
KEKRKTAEKKDKDEHLKSSEHRLVGSRNKIINGIVQKQDTVAEESEKQGTKAGRSSTRKR
SRSRSPKSRSPIVHSPKRRDRRSPKRRQRSMSPTLTPKAGKIRQSGVKQSHMEEFPPTSR
EERNAKRSAKQDIRDPRRLKKTDEERPQEIINQHSTKSGAEPKENVDSWQSSKSTKRWKS
GWEENKSLQQGDEHSKSPHLRHRESWSSTKGILSPRTPKQQHRLSVDANLQIPKELTLAS
KRELLQKTSERLASGEITQDEFLVVVHQIRQLFQYQEGKHRCNVRDSPTEENKGGLKKKP
LLSDAELTYYEHKAKLKRTQVQHSFPRLDLLDPDIFDYPLTDALLSGIECEPSKSKHASR
NSGAQFDRKEQFSERARRLSPISGSRTYAENLSPHEGRRRHDEQVSAKGVREEQRSPFND
RFPLKRPRYEDSDKSYVDGPASRFAGLDTNQRLTALAEDRPLFDGPSRPSVTRDGPTKMI
FEGPNKLSPRIDGPPAPGSLRFDGSPGQMGGGGPLRFEGPQGQLGGGCPLRFEGPPGPVG
TPMRFEGPIGQGGGSFRFEGSSGLRFEGSAGGLRFEGPGGQPVGGLRFEGHRGQPVGGLR
FEGPHGQPVGGLRFDNPRGQPVGGLRFEGGHGPSGPAIRFDGPHGQPAGGIRYEGPLLQQ
GVGMRFEGPHGQSAGLRFEGQHNQLGGNLRFEGPHGQPGVGIRFEGPIVQQGGGMRFEGP
VPGGGLRIEGPLGQGGPRFEGCHALRFDGQPSLLPRFDGMHGQPGPRFERTGQPGPQRFD
GPPGQQVQPRFDGIPQRFDGPQHQQASRFDIPLGLQGARFDNHPSQRLESVSFNQTGPYN
DPPGNAFNAPFQRPEQIFDTPQGPNFNGPHGPGNQNFSNPLNRASGHYFDEKNLQGPQFG
NFGNLSAPLAVGNLQTSQQVLTGVAQPVAFGQGQFLPVHPQNPGAFVQNPSGALPKAYPD
NHLSQVDVNELFSKLLKTGILKLSQPDSSTTQVNEVAVQPPPEEEEDQNEDQDVPDLTNF
TIEELKQRYDSVINRLYTGIQCYSCGMRFTTSQTDVYADHLDWHYRQNRTEKDVSRKVTH
RRWYYSLTDWIEFEEIADLEERAKSQFFEKVHEEVVLKTQEAAKEKEFQSVPAGPAGAVE
SCEICQEQFEQYWDEEEEEWHLKNAIRVDGKIYHPSCYEDYQNTSSFDCTPSPSKTPVEN
PLNIMLNIVKNELQEPCESPKVKEEQIDTPPACTEESIATSTEIKTENDAVESV
NT seq
5025 nt
NT seq
+upstream
nt +downstream
nt
atgtcggaggcggcgccggccgaggccgggcccgcgggggcccgggaggacgcctgccgg
gactaccagtcgtcgctggaggacctgaccttcaacagcaagccgcacatcaacatgctg
accatcctggccgaggagaacctgcccttcgccaaggagatcgtctcgctcatcgaggcc
caaaccgccaaggctccttcctcagagaagcttccagtcatgtaccttatggattctatt
gtgaaaaacgttggaagagagtatctcactgcctttactaaaaacctagtcgcgacattt
atttgcgtgtttgaaaaggtggatgaaaatactaggaaaagtttatttaaattacgttcc
acatgggatgaaatattccctttgaagaaactttatgccttggatgtcagagtcaattcg
ttagatcctgcttggcctattaaacctctgccccccaatgtgaatacatctagcatccat
gtgaatcctaaatttttaaataaatcgcctgatgagccttcaacccctggcacagtggtc
agttccccgaccatctccactcctccagtcgtccctgatttacaaaagaatcttacccaa
gagcaactaatcaggcagcagttactggccaaacagaagcagttactagaacttcagcag
aagaagctggagcttgagctggagcaggctaaggcacaactggcagtttcacttagcgtt
cagcaggagacatccaacttaggtcctggatctgcaccatccaaattacacgtttcacaa
attccccctatggtagttaaagctccccatcaggttcctgtgcaacctgagaaaagtcgt
ccaggtccatccttacaaattcaagatttgaaaggaactaaccgggacccccgtcttaat
aggatgagtcagcattcttctcatggcaaagatcagagtcataggaaagatttcctaatg
aacacattgaatcagtctgatattaaggcaactaaaactgttccctctgaaaaaattaat
tcatccaagcaagaaaaaagtaaatcaggtgaaaaaataaacaagaaagaacttgaccaa
ttagattctaaatctaaatctaaatctaagtcaccatcacctttgaaaaataaactatcc
catacaaaagacttgaaaaatcaagaaactgaaagcacaagggtgtctgatatgagcaag
agagatccgagattaaaaaaacatcttcaggataaaattgataacaaagatgatgattta
aaagagaagagaaaaactgcagaaaaaaaggataaagatgagcacttgaaatcatctgaa
cacagactggttggaagtagaaataaaatcataaatggtattgtacaaaaacaggataca
gtagcagaagaatctgaaaaacaggggactaaagcagggagatcaagtactaggaagcga
tcgaggtcacggtcacccaagtctcggtcaccaattgtacattctccaaagagaagagat
aggcgatcacccaaacgaagacagaggagcatgtccccgactttgacacccaaagctggg
aaaattcgccagtcaggagtaaaacagtcacatatggaagagtttccaccaacttcgagg
gaagaaaggaatgccaagagaagtgctaagcaggatattagagatccaaggcgattgaaa
aagaccgatgaggaaaggccacaggaaattataaaccagcattctacaaagtcaggagct
gaaccaaaggagaatgttgacagctggcaaagttccaagtctactaagagatggaaatct
ggttgggaagaaaataaaagtttacaacagggtgacgaacatagtaaatctcctcatcta
aggcatagggagagctggtcgagcactaaaggaatattgtcacctcgaaccccaaagcag
cagcatcgattgagtgtagatgccaatcttcagattcctaaagaattaactcttgcaagc
aaaagagaattacttcaaaagacgagtgaacgtttagcatctggtgaaattacacaagat
gagttccttgttgttgtgcatcaaattcgacagctatttcagtatcaagaaggtaaacat
agatgcaatgtacgggatagtcctacagaagaaaataaaggtggattaaaaaagaaacct
ctcttatctgatgctgaattaacctactatgaacataaagcaaaactgaaaagaacacag
gttcagcattcatttccaagacttgatctcttagatcctgatatttttgactaccctttg
actgatgccttgttgtctggaatagaatgtgagccatccaaaagtaaacatgcaagtagg
aatagtggagcacagtttgacagaaaagaacaatttagtgaaagagcaagacgtctttct
cctatatctgggagtcgtacttatgctgagaatctttcaccccatgagggccggagaaga
catgacgagcaagtctctgctaaaggtgtacgagaagaacaaagatcaccattcaacgat
cgttttcctcttaagcgacctagatatgaagattcagataaatcatatgtagatggtcca
gcatcaagatttgccggccttgatacaaatcagcgacttaccgctttagctgaagataga
cctttatttgatggacctagtaggccatcagtaacgagagatggcccaaccaagatgatt
tttgaaggacctaataaattaagccctagaattgatggacctcctgcaccaggttctctt
cggtttgatgggtcaccaggacaaatggggggaggtggccctttgagattcgaaggacct
caaggtcagttaggaggtgggtgccctctgagatttgagggtcctccaggaccagttggg
acacctatgcggtttgaggggccaattggtcaaggaggaggtagttttaggtttgaaggc
tcctctggtttgagatttgagggatctgcaggtggtttgagatttgaaggaccagggggc
caacctgtgggcggtctcagatttgagggacatcgaggtcaacctgtgggtggtctgagg
tttgagggacctcatggtcagcctgtgggtggacttagatttgataatcctcgaggtcag
cctgtaggtggacttagatttgaggggggtcatggtccatcagggcctgcaattaggttt
gatgggcctcatggtcagccagcaggtgggattaggtatgagggtcctttgctacagcag
ggagtagggatgaggtttgagggccctcatggtcagtcagctggtttgaggtttgaagga
caacataatcaacttggtgggaaccttaggtttgagggtccacatggtcaaccaggggtt
gggatcaggtttgaaggacctatagtacagcaaggaggtggaatgaggtttgagggtcct
gtaccaggaggtggcctgagaattgaagggcctctgggtcagggtggtccaagatttgag
ggctgtcatgcattaaggtttgatgggcagccatctcttttgccaagatttgatggtatg
catggtcagccaggtcctagatttgaacgaactggtcagccaggcccacagcgatttgat
ggacctcctggacaacaggttcaaccaagatttgatggtatacctcagagatttgatggt
ccacaacaccagcaggcatcaagatttgatattcctcttggtcttcaaggtgcacgattt
gacaatcatccttcacaaagacttgaatcagtatctttcaatcagactggtccatataat
gacccacctggcaatgcttttaatgccccgttccaaagacctgaacaaatatttgataca
ccccaaggaccaaattttaatggaccacatggtcctggaaaccagaatttttctaatccc
cttaacagagcttctggacactattttgatgaaaagaatcttcagggtcctcagtttgga
aactttggtaatttatcagctcctttagcagtaggaaatcttcagacatctcaacaggtt
ttgactggtgttgctcagcctgtagcatttggacaaggacagtttttaccagttcatcct
caaaatcctggagcgtttgttcagaatccttcaggagcgcttcctaaggcatatcctgat
aatcatctcagtcaggtggatgtaaatgaactcttctcaaaactgctaaaaacaggaatt
ctcaaattgtcccagcctgattcatctacgacacaagtaaatgaagttgctgttcagcct
cctcctgaagaggaggaagatcaaaacgaagatcaagatgttcccgatcttaccaatttt
acaattgaagagttgaaacaacgttatgacagtgttatcaatcgactatatacgggtatt
cagtgctactcttgtggaatgaggtttacaacatcacaaacagatgtatatgcagatcat
ttggactggcattatcgacaaaatagaactgaaaaagatgttagcagaaaagtcactcac
aggcgttggtactacagtttaacagactggatagaatttgaggaaatagctgatctggag
gagcgtgcaaagagccagttttttgaaaaggtgcatgaagaagtcgtgctaaaaactcag
gaggctgctaaagagaaggaattccagagtgtgcctgctggaccagccggagcagttgaa
agttgtgaaatctgccaagaacaatttgaacagtactgggatgaagaagaggaggaatgg
catttgaaaaatgcaattagagtagatggaaagatttatcatccatcatgttatgaagat
tatcaaaatacatcttcatttgattgtacaccatctcccagcaagacaccagttgaaaac
cccttgaacattatgttgaacattgtcaaaaacgaattgcaagaaccctgtgaaagtccc
aaagttaaggaagaacaaattgataccccaccagcttgtacagaggaaagcatagcaaca
tccactgaaattaaaacagaaaatgatgcagttgagtcagtttaa
DBGET
integrated database retrieval system
