Sorex fumeus (smoky shrew): 130025497
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Entry
130025497 CDS
T10594
Symbol
PARPBP
Name
(RefSeq) PCNA-interacting partner isoform X1
KO
K27412
PCNA-interacting partner
Organism
sfum Sorex fumeus (smoky shrew)
Brite
KEGG Orthology (KO) [BR:
sfum00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sfum03400
]
130025497 (PARPBP)
DNA repair and recombination proteins [BR:
sfum03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
130025497 (PARPBP)
TLS (translesion DNA synthesis) factors
Other TLS factors
130025497 (PARPBP)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PARI_N
Cas8b_C
Motif
Other DBs
NCBI-GeneID:
130025497
NCBI-ProteinID:
XP_055972406
LinkDB
All DBs
Position
Unknown
AA seq
579 aa
AA seq
DB search
MAVLSQKSVLDMIKEFRRNWHTLCYSERTTVCGADAMLSVLQLSMAENNKRQSGEFEVSL
SDVLLTWKYLLHDKLNIPVEDMEMIDHYEDIRRTYDDCLRNSNMLDLIDVYQKCSAVVSN
CENNTSISPSQLLDFLSGRQNVVNDATDPYILRSPMSKHTQDNEKVQLLAKKIICSYLSL
LVNSKNDLALAHILNIPDRGLGREAFTDLKHAAREKHLSIFLVATSFIRALELGGKGYAP
SPSDPLRTHVKGLSNFINFIDKLDEILGEIPNPSIAGSRILSVIKMQLIKGQNSRDPFYK
AVEEVAQDLDLRIKAIINSQQGNVTVNTTDISPARPKSYTINHGTAYCGRDTVKMLLVLL
DEEAASAPTKNKADLLYDDENTVLPNGISMLTLYRSPTQVNNLSIKPLRERIHESVQEKK
IKMRQTLIRSQFACTYKDDYMINKNKRNNVDPASEPLSVLHMKNDLSESVSSSVGRPTFG
SSSGNVHLDRSKNEKARKPSSQTGNKSSKRKQVDLDDENILCDNGNEPPQHKNVKLPKIS
NNLQNKVDGKLTKVAKINKSTSKNKLLTGQTKLTQFFRL
NT seq
1740 nt
NT seq
+upstream
nt +downstream
nt
atggctgtgctcagccagaagtccgtgttggatatgattaaagagttcagaaggaattgg
cacacactttgttactctgagaggactactgtgtgtggggcagacgccatgctctcggtg
ctacagctttctatggccgagaacaacaaacggcaaagtggagaatttgaagtctctctc
agcgatgtcttattaacctggaaatatttattacatgataaattgaacataccagttgaa
gatatggaaatgatcgaccattatgaggacattcgaaggacttatgatgattgtttaaga
aatagcaacatgttagatctgattgatgtctatcaaaaatgcagtgctgtcgtttctaat
tgtgaaaataataccagcatatccccaagtcaactactggattttctgtctggaagacag
aatgtggtaaatgatgcaactgatccttatatactgagatcaccaatgagtaagcatacc
caagataatgagaaggtacagttattagcgaagaaaattatctgctcctatttaagtctg
ctagtgaattcaaagaatgatctggctctggctcatattctgaatattcctgatagaggg
cttgggagagaagcgttcacagatttgaaacatgccgctcgagagaagcatttgtctatc
tttttggttgccacatcttttattagagcattagagcttggagggaaaggatatgcacca
tcaccatctgatcctttaaggacacatgtgaaaggattatctaattttattaatttcatt
gacaaattagatgagattcttggagagattccaaatcccagcattgcagggagtcggata
ctctcagtgataaagatgcagctgattaaaggccagaacagtagggatcctttttataaa
gcagtagaggaagttgctcaggatttggacttgaggattaaagctattatcaattctcaa
caaggaaatgtcactgttaacaccactgacatcagtcctgcacggccaaaatcttatacc
ataaaccatggcactgcatactgtggcagagatactgtgaaaatgttactggttcttttg
gatgaagaggcagccagtgcacctaccaaaaacaaagcagaccttttatatgatgatgaa
aacacagttcttcctaatggaatttctatgcttacactttacaggtctcccacgcaagtg
aataatttatccataaaacccctaagagaacgcatccatgagtcagttcaagagaagaaa
atcaagatgagacaaaccttaattagatctcagtttgcttgtacttacaaagatgactac
atgataaacaagaataaacgaaataatgttgatccagcatcagagcctttgagtgttctt
cacatgaaaaatgacctttctgagagtgtcagttcctctgttggaagacccacatttgga
tcaagttctggaaatgtccatctggacagaagtaaaaatgaaaaagcaagaaaaccaagt
agtcagacaggaaataaaagctcaaaaaggaaacaggtggacttggacgatgaaaatatt
ctgtgtgataacggaaatgaaccacctcaacataaaaatgttaagctccctaagatttca
aacaatttgcagaataaagtggatggcaaactaaccaaagttgcaaaaatcaacaagagt
accagcaagaacaaattgcttactggccagacaaagttaactcagtttttcagactgtga
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