Sorex fumeus (smoky shrew): 130026197
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Entry
130026197 CDS
T10594
Symbol
MSH2
Name
(RefSeq) DNA mismatch repair protein Msh2
KO
K08735
DNA mismatch repair protein MSH2
Organism
sfum Sorex fumeus (smoky shrew)
Pathway
sfum01524
Platinum drug resistance
sfum03430
Mismatch repair
sfum05200
Pathways in cancer
sfum05210
Colorectal cancer
Brite
KEGG Orthology (KO) [BR:
sfum00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
130026197 (MSH2)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
130026197 (MSH2)
09162 Cancer: specific types
05210 Colorectal cancer
130026197 (MSH2)
09176 Drug resistance: antineoplastic
01524 Platinum drug resistance
130026197 (MSH2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sfum03400
]
130026197 (MSH2)
DNA repair and recombination proteins [BR:
sfum03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
130026197 (MSH2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_II
MutS_I
AAA_27
Motif
Other DBs
NCBI-GeneID:
130026197
NCBI-ProteinID:
XP_055972936
LinkDB
All DBs
Position
Unknown
AA seq
933 aa
AA seq
DB search
MAVQPKDTLQLEGAAELGFVRFFLGMAEKPATTVRLFDRGDFYTAHGEDALLAAREVFKT
QGVVKHLGPAGAKTLESVVLSKMNFESFVKDLLLVRQYRVEVFKNRAGNKASKENDWYLA
YKASPGNLSQFEDILFGNNDTSAAIGVVGVKMSSVDGQRQVGIGYVDALDRKLGLCEFPD
NDQFSNLEALLIQIGPKECVLPAGEASGELGKLRQVIQRSGILITERKRTDFSTKDIYQD
LNRLLKGKKGEQVNSAVLPEMENQVAVSSLSAVIKFLELLSDDSNFGQFELTTFDFGQYM
KLDIAAVRALNLFQGSVEDTSGSQSLAALLNKCKTPQGQRLVNQWIKQPLMDRSRIEERL
NLVEAFVEDAELRQSLQEDLLRRFPDLNRLAKKFQRQAANLQDCYRLYQGINQLPNVIRV
LEKYEGKHQTLLLAVFVTPLSDLRSDFSKFQEMIETTLDMDQVENHEFLVKPSFDPNLSE
LREIMDDLEKKMQSTLVSAARELGLDAGKQIKLDSSAQLGYYFRVTCKEEKVLRNNKNFS
TVDIQKNGVKFTNSKLTSLNEEYIKNKTEYEDAQDAIVKEIVNISSGYVEPMQIFNDVLA
QLDAVVSFAHVSNGAPVPYVRPVILEKGQGRVTLKASRHACVEVQDDVAFIPNDVEFEKD
KQMFHIITGPNMGGKSTYIRQTGLIVLMAQIGCFVPCAFAEVSIVDCILARVGAGDSQLK
GVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMF
ATHFHELTALASQVPTVNNLHVTALTTEETLIMLYQVKKGVCDQSFGIHVAELANFPRHV
IECAKQKALELEEFQNIGEPQYDDMGPAAKRCHLEREQGEKIIQEFLYKVKQVPFTKMSE
ENIMKRLKQLKAEVVAQNNSFVNELIKRIKVTS
NT seq
2802 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgcagccgaaggacacgctgcagctggagggcgcggccgagctgggcttcgtg
cgcttcttcctgggcatggccgagaagcccgccaccacggtgcgcctgttcgaccgcggc
gacttctacacggcgcacggcgaggacgcgctgctggccgcccgcgaggtgttcaagacg
cagggggtggtcaagcacctgggcccggcaggagcaaagacgctggagagtgttgtgctg
agtaagatgaactttgagtcttttgtaaaagatctgcttctagttcgtcagtatagagtt
gaagtgtttaagaacagagctggaaataaggcatccaaggagaatgattggtatttggca
tataaggcttcccctgggaacctttctcagtttgaagacatcctttttgggaacaacgac
acgtcggcagccattggtgtggtgggtgtgaagatgtcctccgtggatggccagcggcag
gtgggcattggctacgtagatgccctggacaggaagctcggcctgtgcgagttcccggat
aatgatcagttctccaacctggaggcgctcctgattcagatcgggcccaaggagtgtgtc
ctccctgccggggaggcatctggagaactggggaagctgcggcaggttattcaaagaagt
ggaattctgatcacagagagaaaaagaaccgacttttccacaaaagacatttatcaggac
cttaaccgactactgaaaggcaaaaaaggagagcaggtgaatagcgctgtcttgccagaa
atggagaatcaggttgcagtttcatcattgtctgcagtcatcaagtttttggaactccta
tcagatgactcaaacttcgggcagtttgaactgactacctttgactttggccagtacatg
aaattggacattgcggcagtcagagcccttaaccttttccagggttctgttgaagatact
tccggctctcagtccctggccgcattgctgaataaatgcaaaacccctcaaggacagaga
ctggttaaccagtggatcaagcagccgctcatggacaggagcagaatagaggagaggttg
aatttggtggaagctttcgttgaagatgcagaactgaggcagagcctacaggaagattta
cttcggagatttccagatcttaaccgacttgctaagaaatttcaaaggcaagcagcaaat
ttgcaggattgctaccgactgtatcagggcataaaccaactccctaatgttatccgagtt
ctggagaaatacgaaggcaaacaccagacgttgttgctggctgtttttgtgacccctcta
agtgatcttcgttctgatttctccaaattccaggaaatgatagaaacaacgttagatatg
gatcaggtggaaaaccatgagttccttgtgaaaccttcattcgatcctaatctgagcgag
ttaagagaaataatggatgacttggaaaagaagatgcagtccacgttagtaagtgcagct
cgagagctaggcttggatgctggcaagcagattaaactggattccagcgcccagttagga
tattattttcgtgtaacctgtaaggaagaaaaagttcttcgtaacaataaaaacttcagt
acggtggatatccagaagaatggtgttaaatttacaaacagtaaattgacttctctcaat
gaagagtacataaaaaataaaaccgagtatgaggatgcccaggatgcaatcgttaaagaa
attgtcaatatttcttcaggctatgtggaaccaatgcagatcttcaatgacgtgctggcc
cagctcgacgcagtcgtcagctttgcccacgtgtcgaatggagcgcctgtcccctacgtc
cggcccgtgattttggagaagggacagggcagagtgactttgaaagcatccagacacgct
tgtgtggaagtgcaagatgacgttgcctttattcctaatgatgttgagtttgaaaaagat
aaacagatgttccacatcatcacaggccccaacatgggaggcaagtccacgtatattcgg
cagaccgggctgatagtgctcatggctcagattggatgttttgtgccttgtgcctttgcc
gaggtgtccattgtggactgcatcctggcccgggtgggggctggcgacagtcagctcaaa
ggagtgtccacgttcatggctgaaatgctggagactgcctccattctcaggtccgcgacc
aaagactctctgataatcatagacgagttgggaagaggaacttcgacctacgatggattc
gggctcgcctgggccatctccgagtacattgcgaccaagattggtgcattctgcatgttt
gcgacccacttccacgagctcacagccttggccagtcaggtgccaacggtgaacaacctc
cacgtcacggctctcaccaccgaggagaccctgatcatgctgtaccaggtgaagaaaggt
gtctgtgatcaaagtttcgggattcacgtggcagagcttgctaacttcccgaggcatgtg
atcgagtgcgccaagcagaaggccctggaactcgaggagtttcagaatattggagaaccg
cagtacgacgacatgggaccagcagcgaagagatgccatctggagagagagcaaggtgaa
aaaattatccaagagtttctatacaaggtgaagcaagtgccgtttaccaaaatgtcagaa
gaaaacatcatgaagaggctcaagcagctgaaggccgaggtggtagcacagaataatagt
tttgtgaatgaactcatcaagcgaataaaggtcacttcgtga
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