Sorex fumeus (smoky shrew): 130026454
Help
Entry
130026454 CDS
T10594
Symbol
FREM1
Name
(RefSeq) FRAS1-related extracellular matrix protein 1 isoform X1
KO
K23380
FRAS1-related extracelluar matrix protein 1/2
Organism
sfum Sorex fumeus (smoky shrew)
Pathway
sfum04512
ECM-receptor interaction
Brite
Lectins [BR:
sfum04091
]
C-Type lectins
Lecticans
130026454 (FREM1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Other DBs
NCBI-GeneID:
130026454
NCBI-ProteinID:
XP_055973252
LinkDB
All DBs
Position
Unknown
AA seq
2182 aa
AA seq
DB search
MPSLRQGGPKVLMLLLLLLLPGWAGPTFISINRGVRVMKGGSAFLSGDDLKFAIPKEKDA
CKVEVVMNEPITQRVGKLSPQIFDCHFLPNEVKYVHNGCPILNEDTVKLRLYRFTETDTF
TETFILRVYLLEPECNIIRLSSNVLEVSEFYGLSRAIDKNLLRFDYDRTASLECTIKLDP
VGTQLPAHGQIVLVEPRPEEPRGDQPHSLFPESQLGTELKCPGGSCTFGLKKVESLKVNC
EEFLLMGFRYQHMSPPSPNIDYISIQLDLTDGRSRTVYKSESMWLPVYIRGGIPNQIPRA
AFMAMYILEVDQFILTSLTTSVLDCEEDETPKPLLVFNITRAPLQGYVTHLLDHTRPVSS
FTWRDLSDMQIAYQPPNSSHSERRHFEVELEAYDFFFGRSAPITVHISIRTADTNAPRVS
WNTGLNLLEGQSRAITWEHFQIVDNDNIHAVQLVIVDGLQHGRLTVRGGKGFLFSVTDLQ
SGVVRYHHDDSDSTKDFIVFRIFDGHHSIHHKFPINILPKDDSPPFLITNIVIELEEGQT
VLIQGSMLRASDMDSSDDYIFFNITKPPQAGEIMKKPGPGLVGYPVPGFLQRDLFNGIIY
YRHFGGEIFEDSFEFILWDSHEPPNLSVPQVVTIHITPVDDQLPREAPGVSRHLVVKETE
VAYITKKHLHFIDLESHDRELLYTITTPPFFNDSHRHLDAGKLFMVDSIPKLTKNPKAPG
LKSFTQDAVNYMKVAYMPPMQDIGPSLQHVQFTFSISNQHGGTLHGVCFNIVILPVDNQI
PQVFTSPLRVDEGGQRVISTEHILVTDADTKLDKVDFSLQSQPLCGRLELNGLPLSAGDT
FSWGDLHAFKVRYKHDGSEEFQDDLLLEVTDGTNKAECVVHIEVFPVNDEPPVLKADLLP
MMHCSEGKEVVISSEYIFATDMDSDDSKLMFMIARGPQHGVVRKAGIPVEQFSQSDVMSG
TVSYRHTGGEIGLLPCFDTITLVVSDREAGPFVNGCCYNEPFPSVPLHESFPMYDLNITI
HPVDNQPPSITIGTMFLVDEGFSAAITVNHLSATDPDTAADDLEFVLVSPPRFGYLENTL
PSTGFEKSNMGISIDSFQWRDMNALHINYVQSRHVRMEPTADQFVVCVSDGKQHSLEIPF
YIVINPTNDEVPDFEVQNITVCEGQMKELDTSVINAADLDVPKDLLMFSVTHKPRHGLLV
NGIFNKGFPQYKQPNNPNQKQEVVQNFSMELLNNGMKLMYIHDDSENLADDFTIQLSDGK
HKLLKTISVMVTPVNDEKPMLNKKAELIMSMGETRIISSAVLSAVDKDSPREKIYYLFES
FPQHGQLQLKIGRNWVPLHPGMKCTQEEVDLNLLRYMHTGAMDSQNQDNFTFYLWDGSNR
SPTFDCHITIKDIDKGDIAISVKPLVVPKGDRGFLTTSNLLAVDGTDKPEELLYVITSSP
RYGQVEYAHYPGHPITSFSQMDIAGQTVCYIHKSKLAFPRDSFRFIVSNGLQTKHGLFEI
TLETVDRALPVVTRNKGLRLAEGATGVLSPDLLQLTDPDTPPENLTFLVVQLPQYGQLYL
RGMMLLQANFTQQDVDGRNVAYRHAGENSQMDCFTFVASDRKNPGFVVDGRVWQEPVSFN
IQVDQLDKTAPHITLLHNPSQVGFLKNGCYGIYITSRVLKASDPDTSDDQIIFKILQRPQ
YGHLENTTTGEIIHEKFSQKDLNSKTILYVINPSLEVNSDFMEFQIMDPSGNSANPQILE
LKWSHIEWSQAEYEVCENVGVLPLEIVRRGHSMDSAFVSVKVNQVSATVGKDFTPTPAKL
IQFDPGMSTKMWNIAITYDGLEEDDEVFEVILNSPVNAVLGTKTKAAVKILDSKGGRCHS
SYSFTPNKHNTWEKDIWQPLSPRSSSPTTSGSFHLERRPFPSSKQLAIIRGDTLRGLEST
DLSRMRLRTRGNGKTVHPSSVYRNETDIIYNYHGVVSLKLEDDSSSTHKKKTKVSVFSQP
QRTFKQAEQPQADKMESTTDSHLPRWDPLPTFPKNCTMDLKGLFHFEESLQKLYKCNGIA
WKAWRPQAKEAEDKSCPAGWHHHSGFCHSLITRQKGTWNTAVQACRRQHLGSLVTVLSKQ
HMQWLWGISGRKPFWIGLNDQGRTGHWEWISGQPVTFTNWRRGTPQRSKPGRNCVLVQRQ
GKWQTKDCRKGKPHNYVCFRKL
NT seq
6549 nt
NT seq
+upstream
nt +downstream
nt
atgccttctctgaggcagggtgggccgaaagtcctgatgttgctgctgctgctacttctc
ccaggctgggccggccccactttcatcagcatcaaccgtggtgtccgggtgatgaagggc
ggctcagctttcctgtcgggagatgacctgaagtttgccatccccaaagagaaagatgct
tgcaaagtggaagtcgtgatgaatgagccaataacacagagggttgggaagctcagcccg
cagatctttgactgccactttcttcctaatgaagtaaagtatgttcacaatggttgccca
attcttaatgaagacacagtaaaacttagactttacagatttactgagacagacaccttc
acagaaacttttatcttgcgggtctatcttctggaaccagagtgtaacatcatccgtctg
agcagcaatgtactggaggtgtctgaattctatggcttgtctcgagccattgataagaac
ctgctcagatttgactatgataggacagctagtctggaatgtacgatcaagctggaccct
gtgggaactcagctgccagcccatggccagatagttctggtggagcctcggccagaagaa
cctcgtggagatcagccacatagtttattcccagagtctcagctgggaactgaactgaag
tgtccaggtgggagttgcacctttgggctaaaaaaagtagaaagtctcaaagtgaactgt
gaggaattcctgctgatggggtttcgataccaacacatgagccccccttctcccaacatt
gattatatctccattcaactggacctcacagacggcagaagcagaactgtatacaagtca
gagagcatgtggcttcctgtgtacatcagagggggcattcctaatcagattccaagggct
gccttcatggccatgtatattttggaagtggatcaattcatcctgacctctctgactaca
tcagttctggactgtgaagaggatgagacccctaaacccctactggtgttcaacattact
cgagccccactccaaggctatgtgactcacctgttggatcacaccagaccagtgtcctca
ttcacctggagagacctgagcgacatgcagattgcctaccagcctccgaacagcagccac
tctgaacgaagacactttgaggtagagttggaggcgtatgacttcttctttggaaggagc
gcacccatcacagtccacatctccatcagaacagcagatacaaatgccccacgagtgtcc
tggaacacaggcctgaatcttctggaggggcagtctcgagctatcacttgggaacacttc
cagattgttgacaatgataacattcacgcagtccagttggtcattgtggatggtctccaa
catggacggctaacagtacgaggagggaaaggatttctcttcagtgtgactgaccttcag
tctggagttgttcgctatcatcatgatgacagtgattccaccaaagattttatagttttc
cggatatttgatggtcatcacagcattcaccataagttccccatcaatattttgccgaag
gatgatagtcccccattcctcataaccaacattgtgattgaactggaggaagggcagacc
gtattgatccagggttccatgctcagagcttcggacatggattccagtgatgactatatc
ttctttaatatcacgaaacccccacaggctggagagatcatgaagaagccagggccagga
ctggtaggctatcccgtgcctggctttcttcagagggatctatttaacggcatcatctat
taccgccattttggtggagaaatttttgaagattcttttgaatttatcctatgggacagt
cacgaacctccaaatctctcagtgccacaggtggtgacaatccatatcactccagtggat
gaccagcttccaagagaggctcctggagtttccaggcatttggttgtcaaggaaacagag
gtggcctacataactaagaaacacttacattttatagatttggaatctcatgacagggag
ttgctctacacaataacaacgcctccatttttcaatgacagccacagacatttggatgct
gggaaattatttatggtggacagtattccaaaattaaccaaaaatcctaaagcccctgga
ctgaagtcattcactcaggatgcggtgaactatatgaaagtggcctacatgccccccatg
caagacatcggcccctccctccagcacgtccagttcacgttttctatcagtaaccagcat
ggtggcactttgcatggcgtctgcttcaacattgtaatcctcccagtggacaatcagatt
cctcaggtatttaccagccctctgagagtggatgagggaggccaacgcgtgatcagcaca
gagcacattctggttactgatgcagataccaaactggacaaggttgacttctctctgcag
agtcagcctttgtgcggaagactggagctgaatggacttcctttaagcgcaggggacaca
ttttcttggggagatctccatgcttttaaagttaggtacaagcatgatggttctgaggag
tttcaggatgacttactgctggaggtcactgacggcaccaataaagcagaatgtgttgta
cacattgaggtatttcctgtaaatgatgagccgccagtcttgaaggctgacctcctcccc
atgatgcattgctcagaaggcaaagaggtggtcatttcctcagagtacatttttgctact
gacatggacagtgatgactcgaaactgatgtttatgattgctcgaggacctcaacatggg
gttgtgaggaaggctggcatcccagtggagcaattctctcagagtgatgttatgtctggc
actgtgtcttacagacacacaggtggtgagattggccttttgccttgttttgacaccatt
acgttggtggtttcggatcgtgaagctggcccttttgtgaatggctgttgttacaatgaa
ccttttccatctgttcctcttcatgaatccttccccatgtatgatctcaacatcactata
catccagtggacaaccaaccgccttcaatcacaataggtaccatgttcctggtagatgag
ggtttctcagcagccattaccgttaaccatttgtctgccactgaccctgacacagcagca
gatgacttggaatttgttttggtttctcctcctcggtttggctaccttgaaaacacactt
ccttctacagggtttgaaaaaagcaatatgggcataagtatagattcatttcagtggaga
gacatgaatgctttgcacattaactacgtgcagtccaggcatgtgaggatggaaccaact
gctgaccagtttgtggtgtgcgtctcagacggaaaacagcattccttggagatacccttt
tacattgtgatcaaccccacaaatgatgaagttcctgactttgaagtacagaatattact
gtgtgtgagggccagatgaaagagctggatacttctgtcatcaatgctgctgacctggat
gttcccaaggatctcctgatgtttagtgtcactcataaaccacgtcatggcctccttgtc
aatgggatatttaacaaaggtttccctcagtataagcaaccaaacaacccaaaccaaaag
caagaagttgttcaaaacttttccatggaacttctcaacaatggaatgaaattgatgtac
atacatgatgactcagagaaccttgctgatgactttacaatccagttgtcagatggaaaa
cataaactccttaaaaccatttcagtgatggtcaccccagttaatgatgagaaaccaatg
ctaaacaagaaggctgaacttataatgagcatgggtgaaacacgtattatttctagtgct
gttctttcagctgtagacaaagactcacccagggagaagatttattatttatttgaaagt
tttccccaacatgggcagcttcagcttaagatagggaggaactgggtccctctccaccct
ggcatgaaatgcactcaggaggaagtggatctgaacttgctgagatacatgcacacgggg
gccatggattctcagaaccaagacaacttcaccttctacctttgggatggcagcaatagg
tcacctacattcgactgtcatatcactatcaaagatattgacaaaggtgacattgctatt
tctgtaaaaccactcgtggtgccgaaaggtgacagaggtttcctgacaacctccaatctc
ctagctgtggacggaacagataagcctgaagaactgctctatgttatcacctcctcccca
agatatgggcaggttgaatatgcccactatcctggacaccccattaccagtttcagtcaa
atggacatagcaggacagacagtttgctacatccataagagcaagctagcttttcccagg
gactcattcagatttatcgtcagcaatggactacagaccaagcatgggctgtttgagatc
acactggagaccgtggacagagccttacctgtggtgaccagaaacaaagggttgagactg
gctgaaggggctacaggtgtgctttccccagatcttctccagctgacggatcccgacact
cctccagagaatctcaccttccttgtggtccagctcccacaatatggccagctctaccta
cgagggatgatgttgctccaagccaacttcacccagcaggatgtggatggcaggaatgtg
gcttaccggcatgcaggagaaaactcccagatggactgctttacttttgtagcctcagat
aggaaaaacccaggctttgtcgtggatgggagagtatggcaagaacctgtttcattcaac
attcaggtagaccagttggacaaaacagcccctcacatcacacttttgcataacccttct
caagtggggttcctgaaaaatggctgttatggtatttacatcacttcccgggttttgaag
gcatcagaccctgacaccagtgatgatcagatcatctttaagattttacaacgaccgcag
tatggacatctggagaacacaacaacaggtgaaattatccatgagaaatttagccaaaag
gacttaaacagcaagaccattctttacgtcataaacccatctttggaagtaaattcagat
tttatggaatttcaaatcatggacccttcaggaaactctgccaatcctcaaattttggaa
ctgaagtggtctcatattgaatggtcacaggctgagtatgaggtgtgtgagaatgtgggt
gtattacccttggaaattgtcagaaggggacattccatggactcagccttcgtgagtgtg
aaggttaaccaagtgtcagctacagttggaaaagattttactccgactccagctaaactg
attcagtttgacccaggaatgtcaactaagatgtggaatatagcaattacctatgacgga
ttagaggaagatgatgaggtctttgaagtaattctgaactcccctgtgaatgcagttctt
ggcacaaagacaaaagctgcagtgaaaattttggactcaaaaggaggacggtgtcattct
tcatattccttcacaccaaacaagcacaacacctgggagaaggacatttggcagcctctg
tccccgagatcttcctcacctaccacttctggttcctttcatctggagagaagacccttt
ccgtcttccaagcagctagccatcatcagaggagacaccctgaggggccttgaatctaca
gatctttctcgaatgagacttagaaccagaggcaatggcaaaacagttcatccatcgtct
gtttatagaaatgaaacagatatcatctataattatcacggagtggtgtctctgaagctg
gaagatgacagttcctcaactcacaaaaagaagaccaaagtatcagtgtttagtcagcca
caaaggacattcaaacaagccgagcagcctcaggcagacaagatggaatccacaactgac
tcacacctccccagatgggacccactgccaacgtttccgaagaactgcactatggatcta
aagggactctttcattttgaagagagcctccaaaagctctataaatgcaatgggattgcc
tggaaagcttggagaccccaagccaaggaggcagaagacaaatcttgccctgctgggtgg
caccatcactcaggcttctgccactccttgatcacgcggcagaaaggcacctggaacaca
gctgtccaagcttgcaggcgacagcacctaggcagccttgtgactgtcctttccaaacag
catatgcagtggctctggggcatcagtggaagaaagccattttggataggtttgaatgac
caagggcgtactggccactgggagtggatatctggtcaacctgtcaccttcaccaactgg
aggagaggaacccctcaacgttcaaagcctggaaggaactgtgtattagttcaaagacaa
gggaaatggcaaacaaaggactgcaggaagggcaaacctcacaattatgtgtgctttagg
aaactctaa
DBGET
integrated database retrieval system
