Sorex fumeus (smoky shrew): 130026463
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Entry
130026463 CDS
T10594
Symbol
SHOC1
Name
(RefSeq) protein shortage in chiasmata 1 ortholog
KO
K28108
shortage in chiasmata 1
Organism
sfum Sorex fumeus (smoky shrew)
Brite
Chromosome and associated proteins [BR:
sfum03036
]
Eukaryotic type
Meiosis-specific proteins
Others
130026463 (SHOC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Other DBs
NCBI-GeneID:
130026463
NCBI-ProteinID:
XP_055973266
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Position
Unknown
AA seq
1444 aa
AA seq
DB search
MTDSGLDQQKADLFVENFFEKKSITEIVTPINNEFDEVVPSSNPNSQTEEETNLYTCEDY
IEIFSPINPLVIYPALQAESQDLSTNEEIISVDNLMTYDSQLTTSDTLLSGQKLCLAEKP
HIDFKGQSTEADYSSECFSFQEDLESFMKDDFFMDEENFGQECLENIVCSFLHFPSPSVL
PENKTLVSSSLSQEADMSAFSEVKESLNFMPEGVNYVDKNKKLSQKDLTIQQNIGTENIK
CSSTEILGTQSQSEPKNREPAMLEMPLIPLNLTNQHSSVNLLCPGLQKFLFSPVGKISLL
TAEESVNKYLKVWQLQSCRSSLKSLLLTVPKTEEPINQHPAINLKKLFSTEEKGVVVSPI
NTERWKQTGLNLIVTEDLEHQNIYLCPDDLSSDDNKMKINLPSKELQLESWQEHKGCPSS
IVLIDEKSTNDHLSLPQKSLSLVEEVPDLCFSDDDISVKTPTKEEKAKNDVELSYRIIEN
EKNKDCKELCHTVPSSLESHSSPIIEKTSFKNGKSCGNNLDLLSDFIMLRKKYNTCISTD
HSDGVLDNDKKDGKECSWMLQEEGMNKTLEKVNQEKMEDNVTEDNVTEDNVIEIQASESQ
CQAYCLLEATATPILKELVRLSTHQAVSWKFATVIFDQTRFLLKEQEKLVSDTIPQGTSN
ERETIYKYASLLHLLVTIRDVLLTCNLDTALGYLSNAKDIYQRILGSYLDNVWRQLTIIQ
FIKGKNPETNYKIQELQCQILSWMQNKEQIKVLIILRMESDGEKDLLIKILKKMEGFKLT
VLHPNERKKNLASRDVLNGTSSCVVVHNQYIGADFPWSNFSFVVEYNYVENSCWTNHCKK
LNIPYMAFKVSLPDTVLKRSTLLDRFGGFLLEIQIPYVFYASEGILNNPEILQLLESSYN
ITLVERCCSESLKLFGDTEHYVVMTINEHTAIVLQDLEELNSEKASDNIVMRLMALSFQY
NYCWIILYSKDTINSEYHLTEKTHQHLAQIYAALVSCGLKSELDVKLIISPGVEETALLI
RQIADHNLMTSKRNPYDYLDKSWFEVSPSKEEMYLLDFPCINPLVAQLMLNKGPSLHWIL
LATLPQLQELLPEVPEKVLKQFCDITSLFRISSSPIKESPQISSPPKNNNQAFASQSSAT
GSTDCIIQEHNEYYQYIDLEETVQKDTNMTSNYDTSFMELRKICLSPPATSYNQTSYWKN
SSYNSNIMQNNSFLANRESRNMAKNSFLYQNNSESDIFSLGLKQSNSAPTSPADTQEILV
PGCINDQRRRLPKAKESINKEASTATPGCSHWNIKNKVQEQHYSFSLPDRTEQTTWNNRF
SQEDHLFTDQQKCLLDESGSFIYESSNSGTEKTVCKELPFAPSMDLFCASDSHVNQKEFN
NFYFNQSAEKCLGQKRHSEFSSTSRENEPLTGGMCSQLPQFKKRRLVYEKVPGRVDGQTR
LKFF
NT seq
4335 nt
NT seq
+upstream
nt +downstream
nt
atgacagattcaggcttggatcaacaaaaagctgatctctttgtggagaatttctttgag
aaaaaatcaattacagaaattgtgaccccgattaacaatgaatttgatgaagttgttcca
agttcaaacccaaactctcaaactgaagaagaaaccaacttatatacttgtgaagactac
attgaaatcttctcacctattaaccctttagtaatatatccagcacttcaagcagagagc
caagatttgtctactaatgaagagatcatttctgtagataatttaatgacctatgatagt
cagctgacaacttcagacactctactgagtggtcagaaattatgtttggctgaaaagccc
catatagacttcaaaggacaaagcacagaagcagattattccagtgaatgtttctctttt
caagaagatttggaaagctttatgaaggacgattttttcatggatgaagaaaactttggt
caagaatgtctagaaaacatagtatgttctttccttcactttccttcaccatcagtattg
cctgagaataaaaccttagtatcttcaagtctcagtcaagaagctgatatgtcagccttc
tcagaagtgaaggaatcattaaacttcatgccagaaggagtaaattatgtagataaaaat
aaaaagctttcccaaaaagatcttactatccagcaaaacattggaactgaaaacataaaa
tgcagctctacagaaattttgggcactcaaagccagagtgaaccaaagaacagagaacca
gcaatgttagaaatgccattaattcctctgaatttaacaaaccaacattcttcggtgaat
ttgttatgtccaggacttcagaaatttttattttctcctgttggcaaaattagtttgctt
actgctgaagaatcagttaacaaatacttgaaggtatggcaattacaaagttgcagaagt
tctttgaagtcacttttgcttacagtgccaaaaactgaagagcccatcaaccagcatcca
gctataaacctgaaaaagctattttctactgaagaaaaaggtgtcgtggttagtcctata
aatacagagagatggaaacaaacaggactaaacctgatagtgacagaagatttggaacat
cagaatatatatttgtgtcctgatgatctatcttctgatgataataaaatgaagattaac
ttgcctagtaaagaactccaattagaatcatggcaagaacataaaggttgcccctcatct
attgtacttattgatgagaaatctacaaatgatcatttatctcttccacaaaaaagttta
tctttggtagaagaagtaccagatctatgtttttctgatgatgatatctctgttaagaca
ccaacaaaagaagagaaagcaaaaaatgatgtggaactatcttatagaataattgaaaat
gaaaaaaataaagattgcaaggaactttgccacacagtaccatcatctcttgagtcacat
tcttctccaataattgaaaaaacatcttttaagaatggcaaaagttgtgggaataatttg
gaccttttgagcgactttattatgcttcgaaaaaaatataatacttgcatctcaactgat
cacagtgatggagtcttagacaatgataaaaaagatggtaaagagtgttcttggatgctt
caagaagaaggtatgaataaaaccctagaaaaagtcaatcaggagaaaatggaagacaat
gtcactgaagataatgtcactgaagataatgtcattgaaattcaagcatcagagagccag
tgccaggcatactgtctcctagaagccacagctactcccattttaaaagaacttgtacgt
ctctctactcaccaggctgttagttggaaatttgccactgtaatttttgatcaaacaagg
ttcctcttaaaggaacaagaaaaattagtaagtgatactattcctcaaggtacaagtaat
gaaagagagacaatatacaagtatgcttctctcttacaccttctggtaacaattagagat
gtacttttgacatgtaacttggacacagctttaggatatttgtcaaatgcgaaagatatc
taccaaagaattttaggctcttacttagacaatgtttggagacaactgacaattatacag
tttattaaggggaaaaatcctgaaaccaattataagatacaagaattgcaatgtcagata
ctgagttggatgcaaaataaagagcaaattaaggtattaattatattaaggatggaatca
gatggtgaaaaagatttactcattaaaatccttaagaaaatggaaggtttcaaattgact
gtcttacatccgaatgaaaggaaaaaaaatttggcatccagagatgttttaaatggtaca
agttcctgtgtagttgtacataatcaatacattggagcagatttcccctggagtaatttc
tcatttgtggtggaatacaattatgtagaaaattcttgttggaccaaccattgcaaaaaa
ctgaatattccttacatggcttttaaagtatctcttccagacactgttttaaagagaagc
accttgttggatagatttggtggtttccttttagaaattcagattccttatgtgttttat
gcctctgagggaattcttaacaatccagaaatacttcagttgttagaatccagttataat
atcaccctagtggaaagatgctgcagtgagtcactaaagctttttggagacacagaacat
tatgtagtaatgacaattaatgaacatactgccatagttttgcaggacctcgaggaatta
aattctgagaaggcatcagacaatattgttatgagattaatggcattgtcattccaatac
aactattgttggataattttatattccaaagacacaattaactcagagtaccatcttaca
gagaagacccatcagcacctagcacagatttatgcagctttggtttcctgtgggctaaaa
tcagaactggatgtaaagcttataatttccccaggagtagaagagactgcactattaatt
cgacaaatagctgaccataatttgatgacctcaaaaagaaatccatatgactatctggat
aaatcctggtttgaagtttcaccatctaaggaagaaatgtatttacttgattttccatgt
attaatccgttggtggcacagctcatgttaaataaaggaccctcactacactggatatta
ttagcaactcttcctcaacttcaggaactcttacctgaagttccagaaaaagtgttaaag
cagttttgtgacatcacttccttattcaggatcagttcttctcccataaaagaatcacct
caaatttcatcacctccaaaaaacaataatcaggcctttgcttctcagagttcagcaact
ggttccacagactgtatcattcaagaacataatgaatattatcaatatatagacttagaa
gagacagtacagaaagacacaaatatgacttcaaattatgacacttcttttatggaatta
agaaaaatatgcctttcaccacctgcgacttcttataatcagacaagctattggaaaaac
tccagttataattctaacataatgcagaacaattcttttctggctaacagagaatcaaga
aacatggctaagaactcatttttatatcagaataattcagaatcagatatattttctttg
ggtctgaaacaatcaaatagtgcacccacatcaccagctgacactcaggagatacttgtc
cctggatgtataaatgaccagagaaggcggctacccaaagcaaaagaatctataaataaa
gaagcgtctactgcaactccagggtgctctcattggaacatcaaaaacaaggttcaggaa
caacattactcattcagtttaccagataggacagagcagactacatggaacaacaggttc
tcccaggaagaccatttattcactgatcagcaaaaatgtctattggatgaatcaggaagt
ttcatatatgaaagttcaaattctgggactgagaagactgtctgtaaagaattgccattt
gctcccagtatggatttattttgtgcttctgattctcatgtaaatcaaaaagaattcaac
aatttttattttaaccaaagtgctgaaaaatgtttaggacagaaaaggcactctgaattt
tcatctacctcaagggaaaatgaaccattaacaggtggcatgtgctcacaattaccacag
tttaaaaaacgacgtctagtatatgaaaaagtccctggcagagttgatggacaaactcgt
ctaaaatttttttga
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