Sorex fumeus (smoky shrew): 130026865
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Entry
130026865 CDS
T10594
Symbol
RIF1
Name
(RefSeq) telomere-associated protein RIF1 isoform X1
KO
K11138
telomere-associated protein RIF1
Organism
sfum Sorex fumeus (smoky shrew)
Pathway
sfum04550
Signaling pathways regulating pluripotency of stem cells
Brite
KEGG Orthology (KO) [BR:
sfum00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04550 Signaling pathways regulating pluripotency of stem cells
130026865 (RIF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sfum03032
]
130026865 (RIF1)
DNA replication proteins [BR:
sfum03032
]
Eukaryotic type
DNA Replication Termination Factors
Other termination factors
130026865 (RIF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rif1_N
Motif
Other DBs
NCBI-GeneID:
130026865
NCBI-ProteinID:
XP_055973542
LinkDB
All DBs
Position
Unknown
AA seq
2460 aa
AA seq
DB search
MTAPARSPLAPLLETLEDPSASLGEQTDAYLTLTSRMTGEDGKEVITEIEKKLPRLYKIL
KVHISSQNSELSSAALQALGFCLYNPKIASGLSEANIKELLSKLNDVVKSSDKNVRTRAL
WVISKQTFSTEVIGKAVPSIIDSLEIILNKGELHSAVVDYEALNVIIRLIEQAPIQMGEE
SVRWAKLVIPLVVHSAQRVHLRGATALEMGMPLLLQKQQEIASITEQLMTTKLLSELQKL
FMTKNETYVLKLWPLFVKLLGKTLHRSGSFINSLLQLEELGFRSGAPMIKKIAFIAWKSL
IDNFALNPEILCSAKRLKLLMQPLSSIHVRTEALALTKLEVWWYLLMRLGPHLPANFEQV
CVPLIQSTISVDSNTSPQGNSSRIGTSPALNSSPAHKGASPYGSPGSTRMNLSSSFGGMA
TIPSIQLLGLEMLLHFLLGPEVLNFAKKNKLVLSLEPLEHSLIGSSSFFSKHANTLISAV
QDSFVTVGKDASDVVINAIWKELISLVTSVIESGNKRERPGSEVLTVLLKSLESIVKSEV
FPVSKILVLMEITIKGLPQKVLGSPAYQVANMDILNGTPALFLIQLIFSKLLEYGIEGER
FFLNLETLVGCVLSGPTSPLAFSDSVLSVISQNAKHLENKEHLWRMWSIIVSPLTELINQ
TNEVNQGDALEHNFSAIYGALTLPISHIFSVQEFPVATMKTLLKTWSELYRAFARCAALV
ATAEENLCCEELSSKIMSSLEDENLSNLFFLDRIIHVMNVIVDCIDFSPYNIKCQLKIKS
PQRLSSDWSKKKKEPLGKLAALFKLIVRIIYSFHSLSLKEAHSDTLLTIGNSITNILSNV
LGHISLPSMIRKIFATLTKPLTLLYENSKLDEVPKVYTSMNNKLEKLLGEIITCLHVSYT
GTYDNELLEQISPLLCIIFLHKNKQIRKQSAQFWNATFAKETLIYPEELKPILRQVKQKI
LLLLPGLENVEVIEESSEPYSDATENSQLNMKISGIERKSSGKRDSFLAKTKEMKENTKP
SAKLKLESASPKTKSEMPLEEEKSTDFVFIPPEGKEPKERILTEHQKEVLKTKRCDIPVM
YNNLDVSQDTLFSQYTQEESMENPITEKSKKSSKTLEEDHTETDIPHMERCGMDEHLEKT
SLSNNGSVEESNPEILSSCNDARKKSLKSSKKITDCTSSAENSVSVNSSSLSSSTISGMS
PQPTSRRQTFITLEKFDGSENRPFSPSPLNNISSTITVKSNQEGMTKTNPSKVKRREVTI
LKADSEKIVQGIKRLGRRSSKTEQTVNKKSKSSVTSDEEKNTQESVDDTGVSENNSPDVL
NQSECALGTEAHLTESAMECKDSTLKAPTENSVLENNTAEENTLGVNLECKENTPPAVTP
AEQVVNEDSQSQVTPNQKTLRRSLRRRSETVETTTDSQDKENNHQKKERNKEEEKTLQKS
PLHVKDDAPKQKLNPEQTVQESSDEKRDHLNEETAGETSANAESDENGKKPYLEILKSEG
DSSQDITDKSSEKPVRGRTRYQTRRASQGLLSSIENSESDSSEAKEEGSRKKRSGKWKNR
SGDSIDMEDQEKVIKQECTNVENQVDYKVNCEVGGDIKSQICEDKEINSNAVQDSTIIKG
LLQVPDDLSNTQEGKVKISKCAEHFMSSPIQEPNLRTRNASKRLHKRESMDNNSVGDSPK
VGTSDISLPDKPLQTLECQHKRSRRVRRSKGCDCCGEKLQSQEKSVIVLKNAENYDVKSS
ETKTDIQIPVSETSKANLNSETNLSHEAHNINFDLGLRENNTVNDSLIISESELKENTVK
TSVSLEEMTFKEILYDTDSKEATFLDSQEPPNKKCKTIDPCHPEDISLESSALETKEEKA
EPILKEELSTMDSIDREPILKKELSTEDSVVRETNLCKEKSEASSVVEAMELDIESDKSE
SSFSEQNNAQSAISEVIPEENSENNESEVVSAQEQNAEAAAAEDFHSGIDHSPNMKPDKV
SGQTEISEETILGAVDEESRCDPGSSEGTHAEAENCEETVIGEVSPEIKQVSEENMKASE
PVETEIKGLNIEMDSPVPEIAEVCSEEGKVDISKTETSVKLQSEDAIEDNQMAMENNGEI
LQQLHTMEKVQEPSPSLTSETTVSDLVTEDNASPQKLRDLDPLLVSACESPSGMQTRCVW
SPLASPSTSILKRGLKRPQEDESSPVNKVRRVSFADPIYQAGLADDIDRRCSVTKPHALT
TTSIAKNVKTSPTSQYKHNITSIKGFLSPGSRSPTFKSSKKCLIAEMTKESIPCPTESIY
PALVNCVAPVEIILPQITSNMWARGLGQLIRAKNIKTIGDLSTLTASEIKTLPIRSPKVS
NVKKALRIYHEQQMKSRGLEEIPVFDISEKTVNGIENKSLSPDEERLASDLIDPVALETP
LPRNLVAQISALALQLDSEDLHNYSGNQLFEMHEKLGSMANSIIKNLQARWKSSAHENSI
NT seq
7383 nt
NT seq
+upstream
nt +downstream
nt
atgacggccccggctcggagccccctcgcgccgctgctggagaccctggaggacccctcg
gcgtcgctgggcgagcagacggacgcctacctcacgctgaccagtcgaatgactggagaa
gatggaaaagaagtcattacagaaatagagaaaaaactccctcggctctacaaaatttta
aaggttcatatttccagtcagaactcagaactcagtagtgctgctcttcaggccttggga
ttttgtttatataatccaaagattgcttcaggattatcagaggcaaatattaaggaactt
ctttcaaaattaaatgatgttgttaagagttcagacaaaaatgtacgcactcgtgcactc
tgggtgatatctaagcagacattttccactgaagttattggcaaagcagtacctagtata
attgactctttggaaataatacttaataagggagagttacattctgctgttgttgattac
gaagcattaaatgtcatcatcaggctaatcgaacaagctccaattcaaatgggagaagaa
tctgtcaggtgggcaaaactggtcataccattagtggttcattcagcacaaagggtgcac
ttaaggggagcaactgctttagagatgggaatgccattgttgcttcagaaacagcaagaa
atagcatctatcacggagcagcttatgactacgaaattgctttcagaactccagaaacta
tttatgactaaaaatgagacttacgtattaaaattatggcctttatttgtcaaacttctt
gggaagaccttgcatcgaagtggaagttttattaattctctattgcagcttgaagagctt
ggatttcgaagtggagcacctatgattaaaaaaatagcttttattgcttggaaaagctta
atagataattttgctttaaatccagaaatactatgtagtgcaaaaagactgaagttgtta
atgcaaccgttgagttccattcatgtgagaacagaagctctagcactaacaaaactagaa
gtctggtggtatttattgatgagacttggacctcaccttccagctaattttgaacaggtt
tgtgtgcctctgattcaaagcacaataagtgttgattctaatacttcacctcaaggcaat
tcatctcgcataggtacttcaccagctttgaattcatctcctgcacacaaaggtgcttct
ccatatggatcccctggatctacccgcatgaacctcagttcaagttttggtggaatggcc
acaatcccatccattcaacttctgggtcttgaaatgttgctccattttttgttgggtcca
gaagttttgaattttgctaagaaaaacaaacttgtactgagcttagagccactggaacat
tccttaattggcagctcctctttcttttctaaacatgcgaatacacttatctctgctgtg
caggacagctttgttacagttggaaaagatgcttctgatgtagtaatcaatgcaatttgg
aaggagctaattagcttggtaacatcggttattgaatcgggtaacaagagagagagacca
ggttctgaggttttgactgtcttgctgaaatctttggaaagcatagtgaagtcagaagta
tttcctgtatctaaaatactggtcctcatggaaattacaattaaaggacttccacagaaa
gtattaggttcaccagcatatcaggttgctaatatggatattcttaatggaactccagct
ttgttcttaattcagttaattttcagcaagcttttggaatacggcatagaaggtgaaagg
ttttttctcaatctcgaaacacttgtaggctgtgttctttctggtccaacttcaccacta
gcttttagcgactctgttttaagtgttattagtcaaaacgcgaagcatttggaaaataag
gagcatctgtggagaatgtggagtattatagtcagccccttaacagaactgatcaatcag
acaaatgaagtgaatcaaggtgatgccttagaacataattttagtgccatctatggtgca
ctgactttaccaataagccacatattttcggtacaggaatttccagtggccactatgaaa
accttacttaaaacttggtcagagttgtatagagcatttgcccgttgtgctgctttggtg
gcaacagcagaagaaaatttgtgctgtgaagaactttcttctaagataatgtccagtttg
gaagatgaaaacctttcaaatttgttcttcttggataggattattcatgttatgaatgta
atagttgattgcatagacttctcaccgtataatattaaatgtcaactcaaaattaaatca
ccacagagactttcatcagattggtcaaaaaagaagaaggagcctttaggaaaattggct
gctttatttaaacttattgtgagaataatctactctttccactcgctgagcctcaaggaa
gcacattctgatactctgctcactattggcaattcaatcaccaacattctttctaatgta
cttgggcatatttctttaccttctatgatccgaaaaatatttgcaactttaacaaaacct
ctgacgttactctatgaaaattcaaagcttgatgaagttcctaaagtttatacctctatg
aataataagttagagaaactactaggagaaattattacttgtctacatgtcagctatact
ggaacttatgataatgaacttcttgaacagatctccccattattatgtataatatttttg
cacaagaacaaacagattcgaaaacagagtgctcagttttggaatgccacatttgctaaa
gagacattgatttatcctgaagagttaaaaccaatattaagacaagtcaaacagaaaatt
ctacttctgttgcctggtttggaaaatgttgaagttattgaagaatcaagtgagccatat
tcagatgcaacagaaaattcacagttaaatatgaagataagcggcattgagagaaaatca
agtggaaaaagagattcctttttggcaaaaacaaaggaaatgaaagaaaatacgaagccg
tcagccaaattgaaactagaatctgcatctccaaaaacaaagagtgaaatgcccctggaa
gaagaaaagtctactgactttgtgtttatacctcctgaaggaaaggaaccaaaggaaaga
atattaactgagcaccagaaagaagtactcaaaacaaagcggtgtgatattcctgtcatg
tacaacaatttggatgtttcacaagacactttattttctcaatatactcaggaagagtcg
atggaaaatcctataactgaaaagtcaaagaaaagttccaagactttagaggaggatcat
acagaaactgacattcctcacatggaacgctgtggtatggatgaacatcttgaaaagact
tccctttcaaataatggttctgttgaggaaagcaacccagaaatactgagcagttgtaat
gatgccagaaaaaaatctttaaaatcatcaaagaaaataactgattgtacatctagtgca
gaaaactctgtcagtgtcaacagtagctcactttctagttccaccatttctggaatgtcc
ccacagcctacaagtcgaaggcaaacctttattactttggaaaagtttgatggctcagaa
aatagaccttttagtccatctcccttgaataatatatcatcaactattacagtgaaaagt
aatcaggaaggtatgactaaaacaaatccatcaaaagtaaagagaagagaagtgactatt
ttaaaagctgattctgaaaaaatagttcaaggaattaagcgattaggtagaagatcaagt
aaaactgagcaaactgtgaataaaaaatccaagtcctcagtgacatctgatgaagagaaa
aatacccaggagtctgttgatgacacaggagtctcagaaaataattcacctgatgtgctt
aaccaatcagaatgtgcactaggcactgaggctcatctcactgaatctgcaatggaatgc
aaagactcgacacttaaagcaccaacagaaaattctgtattagaaaacaatactgcagaa
gagaataccttaggagtgaatttggagtgtaaagaaaatacacccccagctgtaacgcct
gcagagcaggtagtaaatgaggatagtcaaagtcaggtcaccccaaatcaaaaaactctt
aggcgatctttaagacgacggtcagaaacagtagaaacaactactgatagtcaagataaa
gaaaataatcatcaaaagaaggaacgaaataaggaagaagaaaaaactcttcagaaaagt
ccattacatgttaaagatgatgcacctaagcaaaagctgaatcctgagcaaactgtacag
gaaagttcagatgagaaacgagatcatttaaatgaggaaactgctggcgaaaccagtgct
aatgctgaaagtgatgaaaatgggaaaaagccatatcttgaaattctcaagtctgagggt
gatagttcccaggacatcacagataagagctctgaaaaaccagtaaggggacgaacacgg
tatcaaacaagaagagcatcccagggcttgctgtctagcattgaaaactcagagtcagat
agttctgaggcaaaagaagaaggttctagaaagaaaagatctggaaagtggaaaaaccga
agtggtgacagtattgacatggaagatcaagagaaagtgataaaacaggaatgcacaaat
gttgagaatcaggtagattataaagtaaattgtgaagtaggcggagacataaaatctcag
atatgtgaagataaagagattaattctaatgctgtgcaagattctaccattattaaaggt
ttactgcaagttcctgatgatttatcaaatacgcaagaggggaaagttaaaattagcaaa
tgtgcagaacattttatgtcaagccctatacaagaaccaaacctcaggacaagaaatgcc
agtaagagattacataagcgagaatctatggacaacaacagtgttggagactctcccaaa
gtaggaacatcagacatttctctgcctgataaaccactccaaacacttgaatgtcagcac
aagagaagtagaagagtaaggagatcaaaaggttgtgattgttgtggagaaaaattacaa
tctcaggaaaagtcagttattgtattaaagaatgcagaaaattatgatgtaaagagtagt
gaaacaaagacagatatacaaatacctgtatcagaaacttctaaagctaatcttaactct
gaaacgaatctttcacatgaggctcataacataaattttgatttagggctcagagagaac
aatactgtcaatgattcattaattatatcagaaagtgagttgaaagaaaatactgttaaa
acttctgtttctctggaagaaatgacatttaaagaaatactatatgatacagattctaag
gaagcaacatttcttgacagccaggagccacccaataaaaaatgtaaaactattgacccg
tgtcatcctgaagacatttcactggaatcatctgctttagaaaccaaagaagaaaaggca
gaacctatcttaaaggaggaactaagtacaatggacagtattgatagggaacctatctta
aagaaggaactaagtacagaggacagtgttgttagggaaaccaatttatgtaaagaaaaa
tcagaagccagttcagtagtagaagctatggaattggatatagaaagtgataaatctgaa
tctagcttctctgaacaaaacaatgcccaaagtgctatttctgaagtgatacctgaggaa
aatagtgaaaacaatgaatctgaagtggtttcagctcaagaacagaatgccgaagcagca
gcagctgaggactttcattcaggtattgaccattctcctaatatgaaaccggataaagtg
agtggtcagacagagatttctgaagaaacaatacttggagccgtagatgaagaaagcaga
tgtgatccaggctcatctgaaggaacccatgctgaagcagaaaattgtgaagaaacagta
attggtgaggtgagtcctgaaatcaagcaggttagtgaagagaatatgaaagcctctgag
cctgtggaaactgaaataaaaggattgaatatagaaatggacagcccagtgcctgaaatt
gcagaggtttgctctgaggaaggaaaagttgacatcagtaaaactgaaacaagtgttaaa
cttcagtctgaagatgcaatagaggacaatcaaatggcaatggaaaataatggcgaaatt
ttacagcaacttcatactatggagaaagtgcaagagccatcaccatctttaacatctgag
acaactgtctctgatctggtaacagaagataatgcctctcctcaaaaattaagggacctt
gatcctttacttgtgtcagcctgtgagagtccgagtggcatgcagacacgctgtgtctgg
tcacctttggcttctccatccaccagcattttaaagagaggactaaagagacctcaagaa
gatgagagctcacctgttaacaaggttcgccgagtctcctttgcagatccaatataccaa
gcaggattggcagatgatattgatagacgatgttctgtcactaagccccatgctttaact
actacttctatagcaaaaaatgttaaaacttcacctacttcacagtataagcataatatc
acttcaatcaaaggatttctgtccccaggatcacgtagccctacatttaagagctcaaag
aagtgtttaattgcagaaatgaccaaagaatccattccgtgcccaacagaaagtatttac
ccagctttagtcaactgtgtggcaccagttgaaataattttacctcaaattacatcaaac
atgtgggcaagaggactaggacaactcattcgtgccaagaatataaaaacaattggtgat
ttgagtactcttacagcatctgaaattaaaactcttcccatccgttctccaaaagtgtcc
aatgtaaaaaaggctctcagaatatatcatgaacagcagatgaagtctcgtggattagaa
gagattccagtttttgacatttctgaaaaaacagtaaacggaatagaaaataaatcactc
tctcctgatgaggaaagacttgcctcagatttaattgatcctgttgctttagaaactccg
ttacctagaaatctcgttgcacagattagtgcacttgctcttcaactggattcagaagat
ctccataattattcaggaaaccagctatttgaaatgcatgagaaacttggtagcatggca
aactcgatcataaaaaatcttcaggcacgttggaagtcatcagctcatgaaaattccatt
tag
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