Sorex fumeus (smoky shrew): 130027084
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Entry
130027084 CDS
T10594
Symbol
CNTN1
Name
(RefSeq) contactin-1 isoform X1
KO
K06759
contactin 1
Organism
sfum Sorex fumeus (smoky shrew)
Pathway
sfum04514
Cell adhesion molecule (CAM) interaction
sfum04517
IgSF CAM signaling
Brite
KEGG Orthology (KO) [BR:
sfum00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecule (CAM) interaction
130027084 (CNTN1)
04517 IgSF CAM signaling
130027084 (CNTN1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
sfum04515
]
130027084 (CNTN1)
00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:
sfum00537
]
130027084 (CNTN1)
Cell adhesion molecules [BR:
sfum04515
]
Immunoglobulin superfamily
Contactins
130027084 (CNTN1)
Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:
sfum00537
]
Others
130027084 (CNTN1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ig_3
I-set
ig
Ig_2
fn3
V-set
FN3_DSCAM-DSCAML_C
F22D3_4_N
Ig_VEGFR-1-like_5th
VEGFR1-3_N_Ig-like
Ig_5
Pur_ac_phosph_N
Sp38
Fn3_VIN3
C2-set_2
fn3_SORL1
Fn3_ROS1
Interfer-bind
Motif
Other DBs
NCBI-GeneID:
130027084
NCBI-ProteinID:
XP_055973721
LinkDB
All DBs
Position
Unknown
AA seq
1017 aa
AA seq
DB search
MKMWFMNIHLMISVTVCLSEFTWHRRYGHGVSEEDKGFGPIFEEQPINTIYPEESPEGKV
SLNCRARASPFPVYKWRMNNGDVDLTSDRYSMVGGNLVINNPDKQKDAGIYYCLASNSYG
MVRSTEATLSFGYLDPFPPEERPEVKVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFI
TMDKRRFVSQTNGNLYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPLAERITKPYP
ADIVVQFKDIYTLMGQNVTLECFALGNPVPDIRWRKVLEPMPSTAELSTSGAVLKIFNIQ
LEDEGIYECEAENIRGKDKHQARIYVQAFPEWVEHINDTEVDIGSDLYWPCVATGKPIPG
IRWLKNGYPYHKGELRLYDVTFDHAGMYQCIAENTHGAIYANAELKILALAPTFEMNPMK
KKILAAKGGRVIIECKPKAAPKPKFSWSKGTEWLVNSSKVLIWEDGSLEINNITRNDGGI
YTCFAENNRGKANSTGTLVITDPTRIILAPINADVTVGENATMQCAASFDRTLDLTFVWS
FNGYVIDFNKENTHYQRNYMLDANGELLIRNAQLKHAGRYTCTAQTIVDNSSASADLVVR
GPPGPPGGLRIEDIRATSVALTWSRGSDNHSPISKYTIQTKTILSDDWKDAKTDPPIIEG
NMERAKAVDLIPWMEYEFRVVATNTLGIGEPSIPSNRIKTDGAAPNVAPSDVGGGGGSNR
ELTITWAPLSREYHYGNNFGYIVAFKPFDGDEWKKVTVTNPDTGRYVHKDETMRPSTAFQ
VKVKAFNNKGDGPYSLTAVINSAQDAPSEAPTEVGVKVLSSSEISVHWEHVIEKIVESYQ
IRYWAAHDKEAAAHRVQVTSQEYSARLENLLPDTQYFIEVRACNSAGCGPPSEMIETFTK
KAPPSQPPRIISSVRSGSNYIITWDHVVALSNESTVTGYKVLYRPDGQHDGKLYSTHTHS
IKVPIPRDGEYVVEVRAHSDGGDGVVSQVKISGVSALSPGILGLLMPFLGFIIYLEF
NT seq
3054 nt
NT seq
+upstream
nt +downstream
nt
atgaaaatgtggtttatgaatattcatcttatgatatctgtaacagtatgcctatcagag
tttacatggcacagacgatatggtcatggagtttctgaggaagacaaaggatttggacca
atttttgaggaacagcctatcaataccatctatccagaagagtccccggaaggaaaggtt
tcattaaattgtagggcacgagccagccctttcccagtttacaaatggagaatgaataat
ggagatgttgatctgacaagtgatcggtacagtatggtaggaggaaaccttgttatcaat
aaccctgacaaacagaaagatgctggaatatactactgtttagcatcaaatagctatggg
atggttagaagcaccgaggcaaccctgagctttggatatctcgatcccttcccacctgag
gagcgacctgaggtcaaagtaaaagaaggaaaaggaatggtacttctttgtgatcctcca
taccatttcccagatgatcttagctatcgctggcttctaaatgaattcccagtatttatc
acaatggataaacgaagatttgtttcccagacaaatggcaatctctatattgcaaacgta
gaggcttcagacaaaggcaattattcctgttttgtttccagtccttctattacgaagagt
gtgttcagcaaatttatcccactcattccattagcagaacgaataacaaaaccataccct
gctgatatcgtagttcaattcaaggacatatatacactaatgggccaaaatgtgacttta
gagtgttttgcccttggaaatcctgtccctgatatccgatggcggaaagtcctagaacca
atgccaagcactgctgagctcagcacctctggggctgtcctcaagattttcaatattcag
ttagaagatgaaggaatatatgaatgtgaagctgaaaatattagaggaaaggacaaacac
caagcaagaatttatgttcaagcatttcctgagtgggtagaacatatcaatgacacagaa
gtggacataggcagtgatctctattggccttgtgtggccacgggcaagcctatccctgga
atccgatggttgaaaaatggatatccgtatcataaaggtgaattgagactatatgatgtg
acttttgaccatgctggaatgtaccagtgcatagctgaaaacacccatggagctatttat
gcaaatgcagagttgaagatcttggctttggctccaacttttgaaatgaatcccatgaag
aaaaagattctggctgctaaaggaggaagagttataattgaatgcaaacccaaagctgca
cctaagccaaaattttcatggagtaaagggacagaatggcttgttaatagcagcaaagta
cttatttgggaagatggcagtttggaaattaataacattacaaggaatgatggtggtatc
tatacatgttttgcagaaaataatagagggaaggctaatagcacagggactcttgttatc
acagatcccacacgaattatattggccccaattaatgccgatgttactgttggagaaaat
gccacaatgcaatgtgctgcctcatttgatcgtactttggatcttacatttgtttggtcc
ttcaatggctatgtgattgattttaacaaagagaatactcactaccagcggaattatatg
ttggacgccaatggggaactgctcattcgaaatgctcaactcaaacatgctgggaggtat
acgtgcacagctcaaacaattgtggacaattcgtcagcttccgctgatcttgttgtaaga
ggtcctcctggtcctcctggtggtttgcggatagaagacatcagagccacttctgtggcc
ctcacttggagccgtggttcagataaccacagtcctatatctaaatatactatccagaca
aagactattctttcagatgactggaaagatgcaaaaacagatcccccaattattgaagga
aacatggagagagcaaaagcagtggatttaatcccatggatggagtatgaatttcgggtg
gtagcaaccaatactttgggtataggagaacctagtataccatcaaacagaataaaaaca
gatggtgccgcacctaatgtggcaccatcagatgtaggaggtgggggtgggagcaacaga
gaactgaccataacatgggcccctttgtcaagagaataccactatggcaacaattttggt
tatatagtggcatttaaaccatttgatggggacgaatggaaaaaagtcacagttactaat
ccagacactggcagatatgtccataaagatgagaccatgcgaccatctactgcatttcaa
gtcaaagttaaggccttcaacaacaaaggagatggaccttacagcctcactgcagtaatt
aattcagcccaagatgcccccagtgaagcaccaacagaagtgggagtaaaagtcttatca
tcctctgagatatctgttcactgggagcatgttatagaaaaaatagtggaaagctatcag
attcgatactgggctgcccatgacaaagaagcagccgcacaccgtgtgcaagtcacgagc
caagagtactctgccaggttggagaaccttctgccagacacccagtacttcatagaagtc
agagcttgcaacagtgcagggtgtgggccccccagtgagatgattgaaactttcaccaag
aaagcacctcccagccagccaccaaggatcatcagttctgtaaggtctggttcaaattac
atcattacctgggatcatgtagtcgcactatcaaatgaatctactgtgacaggatataag
gtactttatagacctgatggccaacatgatggcaaattgtattcaactcatacacactcc
attaaagtcccaatccccagggatggagaatacgttgtagaggtccgtgcacacagtgat
ggaggagatggagtagtgtctcaagtcaaaatttcaggtgtatccgctttatcaccaggt
attcttggtttgctcatgcctttccttggcttcataatctatttggaattctga
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integrated database retrieval system
