Sorex fumeus (smoky shrew): 130027186 Help Entry 130027186         CDS       T10594                                  Symbol COL2A1 Name (RefSeq) collagen alpha-1(II) chain   KO K19719   collagen type II alpha Organism sfum  Sorex fumeus (smoky shrew) Pathway sfum04151   PI3K-Akt signaling pathway sfum04510   Focal adhesion sfum04512   ECM-receptor interaction sfum04974   Protein digestion and absorption sfum05165   Human papillomavirus infection Brite KEGG Orthology (KO) [BR:sfum00001]  09130 Environmental Information Processing   09132 Signal transduction    04151 PI3K-Akt signaling pathway     130027186 (COL2A1)   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     130027186 (COL2A1)  09140 Cellular Processes   09144 Cellular community - eukaryotes    04510 Focal adhesion     130027186 (COL2A1)  09150 Organismal Systems   09154 Digestive system    04974 Protein digestion and absorption     130027186 (COL2A1)  09160 Human Diseases   09172 Infectious disease: viral    05165 Human papillomavirus infection     130027186 (COL2A1)  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:sfum00536]     130027186 (COL2A1) Glycosaminoglycan binding proteins [BR:sfum00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    130027186 (COL2A1) BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  Collagen COLFI VWC Motif Other DBs NCBI-GeneID:  130027186 NCBI-ProteinID:  XP_055973810 LinkDB All DBs Position Unknown AA seq 1487 aa AA seqDB search MARLGAPRTWVLLTLLAAAVLRGQGQDAQEAGSCVQDGQRYNDKDVWKPEPCRICVCDTG TVLCDDIICEEVKDCLSTEIPFGECCPVCPTDLSTASGQPGPKGQKGEPGDIKDIVGPKG PPGPRGPAGEQGPRGDRGDKGEKGPPGPRGRDGEPGTPGNPGPPGPPGLPGRPGLGGNFA AQMAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPAGSPGPQGFQGNPGEPGEPGVSGPMG PRGPPGPPGKPGDDGEAGKPGKSGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKG EAGAPGVKGESGAPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPPGPVG PAGGPGFPGAPGAKGEAGPTGARGPEGAQGSRGEPGTPGSPGPAGASGNPGADGIPGAKG SAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQG APGPAGEEGKRGARGEPGGAGPAGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAG PKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKIGPSGAPGEDGRPGPPGPQGARGQPG VMGFPGPKGANGEPGKAGEKGLAGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPG PSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGGRG LPGTPGTDGPKGASGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPG KDGGRGLTGPIGPPGPAGANGEKGEAGPPGPSGTAGARGAPGERGETGPPGPAGFAGPPG ADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPG AAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGDPGLQGPAGAPGEKGEPG DDGPSGPDGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPG PVGPPGLTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGETGALGAPGAPGPPGSPGPSG PTGKQGDRGEAGAQGPMGPAGPAGARGIPGPQGPRGDKGETGEAGERGLKGHRGFTGLQG LPGPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGSNGIPGPIGPPGPRGRSGETGPAG PPGNPGPPGPPGPPGPGIDMSAFAGLGQREKGPDPMQYMRADQAAGSLRQHDAEVDATLK SLNNQIESIRSPEGSRKNPARTCQDLKLCHPEWKSGDYWIDPNQGCTLDAMKVFCNMETG ETCVYPSPATVPKKNWWSRKNKEKKHIWFGETINGGFHFSYGDDNLAPNTANVQMTFLRL LSTEGSQNITYHCKNSIAYMDEAAGNLKKALLIQGSNDVEIRAEGNSRFTYTVLRDGCTK HTGKWGKTIIEYRSQKTSRLPIIDIAPMDIGGPEQEFGVDIGPVCFL NT seq 4464 nt NT seq  +upstreamnt  +downstreamnt atggcccgcctcggggccccccggacgtgggtgctgctgacgctgctcgccgccgccgtc ctgcgcggccagggccaggatgcccaggaggccggcagctgtgtgcaggacgggcagagg tataatgataaggatgtctggaagcccgagccctgccggatctgtgtctgtgacactggg accgtcctctgcgacgacataatctgtgaagaagtgaaagactgtctcagcactgagatc cccttcggagagtgctgccccgtctgcccgactgacctctccactgccagtgggcaacca ggaccaaagggccagaaaggagaacctggagatatcaaggatattgtaggacccaaagga ccccctgggccacggggacctgcaggtgaacaaggacctagaggtgatcgtggtgacaaa ggtgaaaaagggccacctggacctcgtggcagagatggagagcctggaacccctggaaat cctggtccccctggccctcctggcctccccggtcgccctggtcttggtggaaactttgct gcccagatggctggaggatttgatgagaaggctggtggtgcccagatgggagtaatgcaa ggaccaatgggccccatgggacctcgaggaccaccaggccctgctggctctcccggtcct caaggatttcaaggcaaccctggggagcctggggagcctggagtctctggccccatggga ccgcgtggtcctcctggtcctccaggaaagcctggtgatgatggtgaagccgggaagcct gggaagtctggtgaaagaggccctccaggccctcagggtgctcgcggctttcccggaact ccaggccttcctggcgtcaaaggtcacagaggttacccgggcctggatggtgcaaaagga gaagctggtgcccctggtgtgaagggtgagagtggcgcccctggggagaacggttctcca ggccccatgggtcctcgcggcctgcctggtgagaggggacggactggcccggccggtgct gcgggagcgaggggcaacgacggtcagcctggccccgccgggcctccgggtcccgtgggc ccagccggcggtcctggcttccctggtgcccccggagccaagggcgaagctggtcccact ggtgcccgcggtcctgaaggcgctcaaggctctcgtggagaacccggcacgcctgggtcc ccggggccggccggcgcatctgggaaccccggagcagatggaattcctggagccaaaggc tcagctggtgctcccggcattgctggtgctcctggatttcccggcccccgtggaccgccc ggcccccaaggtgcgactggtcctctgggccccaaaggccagacgggcgaacccggcatc gctggcttcaaaggcgagcaaggccccaagggagagcctggtcctgccggcccccaagga gcccctggtcccgccggcgaagaaggaaagagaggagctcggggcgagcctgggggtgct ggtcctgccgggccccctggagagagaggtgctcctggcaaccgcggcttcccaggccag gacggtctggcagggcccaagggagctcccggagagcgagggcccagcggccttgctggc cccaagggcgccaacggtgaccctggccgtcctggagaacctggccttcccggggcgcgg ggtctcactggccgccctggtgatgctggtcctcaaggcaaaatcggcccttccggagcc cccggtgaagacggccgccctgggcctccgggtcctcagggggcccgcggacagcccggt gtcatgggttttcctggccccaaaggcgctaacggtgaacccggcaaagctggcgagaag gggctggctggtgctcccggcctgagaggtcttcctggaaaagatggtgagacaggagct gctgggccccccggacctgctgggcctgccggcgagcgaggcgaacagggtgctcccggg ccgtcgggcttccagggacttcctgggcctcccggtccccccggagaaggcggaaagcca ggcgaccagggcgttcccggtgaagctggagccccaggcctcgtgggcccccggggcgaa cgagggttcccaggcgaacgcggctcccccggcgcccagggcctccagggtggccgcggc ctccccggcactcccggcactgacgggcccaaaggtgcatccggccccgctgggccccct ggcgctcaaggtcccccaggtctgcagggcatgccaggagagagaggagccgcgggcatc gccgggcccaagggagacaggggcgacgttggtgagaagggcccggagggagcccccggg aaggatggtgggcgaggtctgactggccccatcggccccccgggtcctgcgggcgccaat ggcgagaagggagaagccgggcctccgggtccttccgggacagctggtgctcgaggcgcc ccgggtgaacgtggggagactggaccccccggacctgctggcttcgctggccctcccggc gctgatgggcagccaggagccaagggagagcagggagaggccggccagaagggtgacgcc ggggccccaggtcctcagggtccctccggagctcccgggcctcagggtcctacgggtgtg actggtcccaaaggagcccgtggtgcccagggccccccgggagcgacgggcttcccaggc gctgccggccgagtgggaccccctggctccaacggaaaccccggcccccctggtcctccg ggtccttctggaaaagatggtcccaaaggtgctcgaggggacagtggccctccgggccga gctggtgaccctggactgcaaggccctgctggagcccctggcgagaagggagagcctgga gatgatggtccctctggtcctgatggccccccaggcccgcagggtctggctggtcagaga ggcatcgtgggtctgcctggacagcgaggcgagagaggcttccctggcctgcccggcccc tcgggtgagcccggcaagcagggtgctcccggggcatctggagaccgcggcccccctggc cctgtgggccctcctggcctgaccggtcccgcgggagagcctggacgagagggaagcccg ggtgctgacggcccccctggcagagacggcgcggctggagtgaagggtgatcgtggtgag actggagccctgggagcccccggagcccctgggccccccggctctcccgggccctctggc cccaccggcaaacagggagaccggggagaagcgggtgcacaaggccccatggggcccgca gggccggccggagcccggggaatcccgggccctcaaggtccccgtggtgacaaaggagaa accggagaggctggcgagaggggtctcaagggacaccgtggcttcacggggctgcagggg ctgcccggaccccccggcccttctggagaccaaggtgcttccggtcctgctggtccttcc ggcccgagaggacctcctggcccggtgggtccctccggcaaagacggttccaacggcatc ccaggccccatcggccctcctggtccccgtgggcgctcaggagaaactggccccgctggt cctcccggaaatcccggccccccaggccctcccggcccgcccggccctggcatcgacatg tctgcctttgctggcctcggccagagagagaagggccccgaccccatgcagtacatgcgg gcggaccaggcagccggcagcctgaggcagcacgacgccgaggtggacgccacgctcaag tccctcaacaaccagatcgagagcatccgcagccccgagggctcccgcaagaaccccgcc cgcacctgccaggacctgaaactctgccaccccgagtggaagagcggggattactggatc gaccccaaccagggctgtactttggatgccatgaaggttttctgcaacatggagactggt gagacctgcgtctaccccagcccagccactgttcccaagaagaactggtggagccgcaag aacaaggagaagaagcacatctggtttggagagaccatcaacggcggcttccacttcagc tacggcgatgacaacctggcccccaacaccgccaacgtccagatgaccttcctccgcctg ctgtccactgagggctcccagaacatcacctaccactgcaagaacagcatcgcctacatg gacgaggccgccggcaacctcaagaaggccctgctcatccagggctccaacgacgtagag atccgggctgagggcaatagcaggttcacctacactgtcctgagggatggctgcacgaaa cacaccggtaagtggggcaagacgatcatcgagtaccggtcacagaagacatcccgtctc cccatcattgacattgcacccatggacatcggagggcccgagcaggaatttggtgtggac atagggcctgtctgcttcttgtaa

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