Sorex fumeus (smoky shrew): 130027358
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Entry
130027358 CDS
T10594
Symbol
HDAC9
Name
(RefSeq) histone deacetylase 9 isoform X1
KO
K11409
histone deacetylase 9 [EC:
3.5.1.98
]
Organism
sfum Sorex fumeus (smoky shrew)
Pathway
sfum04613
Neutrophil extracellular trap formation
sfum05034
Alcoholism
sfum05203
Viral carcinogenesis
Brite
KEGG Orthology (KO) [BR:
sfum00001
]
09150 Organismal Systems
09151 Immune system
04613 Neutrophil extracellular trap formation
130027358 (HDAC9)
09160 Human Diseases
09161 Cancer: overview
05203 Viral carcinogenesis
130027358 (HDAC9)
09165 Substance dependence
05034 Alcoholism
130027358 (HDAC9)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
sfum03036
]
130027358 (HDAC9)
Enzymes [BR:
sfum01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
130027358 (HDAC9)
Chromosome and associated proteins [BR:
sfum03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class II HDACs
130027358 (HDAC9)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Hist_deacetyl
HDAC4_Gln
Motif
Other DBs
NCBI-GeneID:
130027358
NCBI-ProteinID:
XP_055974038
LinkDB
All DBs
Position
Unknown
AA seq
1089 aa
AA seq
DB search
MMSSPVQPDGVAGREQLLAQQRMHSMISSVDVKSEVPVGLEPISPLDLRTDLRMMMPVVD
PVVREKQLQQELLLIQQQQQIQKQLLIAEFQKQHENLTRQHQAQLQEHIKLQQELLAIKQ
QQELLEKEQKLEQQRQEQEVERHRREQQLPPLRGKDRGRERAVASTEVKQKLQEFLLSKS
ATKDTPTNGKNHSVSRHPKLWYTAAHHTSLDQSSPPLSGTSPSYKYTLPGAQDGKDDFPL
RKTASEPNLKVRSRLKQKVAERRSSPLLRRKDGNVVTSFKKRMFEVTESSVSSSSPGSGP
SSPNNGPTGNVTENETSVLPPTPHAEQMISQRVLIHEDSMNLLSLYTSPSLPNITLGLPA
VPAPLSASNPLKEKQKCESQALRQGVPLPGQYGGSISTSASHPHVALEGKPNSSHQALLQ
HLLLKEQMRQQKLLVAGGVPLHPQSPLATKERISPGIRGTHKLPRHRPLNRTQSAPLPQS
TLAQLVIQQQHQQFLEKQKQYQQQIHMNKLLSKSIEQLKQPGSHLEEAEEELQGDQAMQE
DRAPSSGNSTRSESSACMDDTLGQVGAVKVKEEPVDSDEDAQIQEMESGEQAAFMQQPFL
EPQHTRALSVCQTPLAVVGMDGLEKQRLVSRLLSSPAASVLPHPAMDRPFQPGSATGIVY
DPLMLKHQCVCGSSTAHPEHAGRIQSIWSRLQETGLLNKCERIQGRKASLEEIQLVHSEH
HSLLYGTNALDGQKQDPRTLLGDASQKIFSSLPCGGLGVDSDTIWNELHSSGAARMAVGC
VIELASKVASGELKNGFAIVRPPGHHAEESTAMGFCFFNSVAITAKYLRDQLNISKILIV
DLDVHHGNGTQQAFYADPSILYISLHRYDEGNFFPGSGAPNEVGTGLGEGYNINIAWTGG
LDPPMGDIEYLEAFRTVVTPVAKEFDPDMVLVSAGFDALEGHAPPLGGYKVTAKCFGHLM
KQLMTLANGHVVLALEGGHDLTAICDASEACVNALLGNKLEPLAEDILHQTPNMNAVISL
QKIIEIQSKYWKSVRTVPLPRGCSLAGVQLQEETETVSALASLTVDVEQSFAQEDSRTAG
EPMEEEPAL
NT seq
3270 nt
NT seq
+upstream
nt +downstream
nt
atgatgagctcacctgtacagcctgatggggtggctggacgagagcagcttttggctcag
cagagaatgcacagtatgatcagctcagtggatgtgaaatcagaggttcctgtgggcctg
gagcccatctcacctttagacctaaggacagacctgaggatgatgatgccagtggtggac
cctgtagttcgtgagaagcaactacagcaagagttactcctcatccagcaacagcagcaa
atccagaagcagctcttgattgcagaatttcagaaacagcatgagaacctgacccggcag
caccaggctcagcttcaggagcacatcaagttgcaacaggaacttttagccataaaacag
caacaagaactcctagaaaaggagcagaaactggagcagcagagacaagaacaggaagtg
gagaggcaccgcagagaacaacagcttcctcctctcagaggcaaagacagaggacgagaa
agggcagtggcaagtacagaagtaaagcagaagcttcaagaattcctgttgagtaaatca
gcaacgaaagacactccaactaatggaaaaaatcattccgtgagccgccatcccaagctc
tggtacacggctgcccaccacacatcattggatcaaagctctcctcccctgagtggaacc
tctccatcctacaaatacacattaccaggagcacaagacggaaaggatgacttccctctt
cgaaaaactgcctctgagcccaacttgaaggtgcggtccaggttaaaacagaaagtggca
gagaggagaagcagccccttactcaggcggaaggatggaaatgttgtcacttcattcaag
aagcgaatgtttgaggtgacagaatcctcagtcagtagcagttctccaggatccggtcct
agctcaccaaacaacgggccaactggtaatgttactgaaaatgagacttcagttttgcca
cctactcctcatgctgagcaaatgatttcacaacgcgttctaattcatgaagattccatg
aacctgctaagtctttatacctctccctctttgcccaacatcacattgggacttccggca
gtgccagccccactcagtgcttcgaatccactcaaagaaaagcagaaatgtgagagccaa
gcactcaggcaaggcgtccctctgcctggacagtatgggggcagcatctcaacatctgca
agtcatccccatgtcgctctagagggaaagcccaacagcagccaccaagctctcctgcag
catttattattgaaagaacaaatgcgacagcaaaaactccttgtggctggtggagttccc
ttacatcctcagtctcctttggcaacgaaagagagaatttcacctggcattcgaggcacc
cacaaattaccccgtcatagacccctgaatcgaacccagtctgcacctttgccgcagagc
acattggctcagttggtcattcagcagcagcaccagcagttcttggagaagcagaagcag
taccaacagcagatccacatgaacaaactgctttcaaaatccattgaacaactgaagcaa
ccaggcagtcacctggaggaagcggaggaggagcttcagggcgaccaggcaatgcaggaa
gacagagcgccctctagtggcaacagcactagaagtgagagcagtgcctgtatggatgac
acactgggacaagttggggctgtgaaagtcaaggaggaaccagtggacagtgatgaagat
gctcagatccaggaaatggaatctggggagcaggctgcttttatgcaacagccgttcctg
gaaccccagcacacacgtgcactgtcggtgtgccaaactccgctggctgtggttggtatg
gatggattagagaaacagcgtctcgtctccagattgctgtcctcccctgctgcctccgtt
ttacctcacccagcgatggaccgccccttccagcctggttctgcaactggaattgtttac
gatcctctgatgctgaaacaccagtgcgtttgtggcagttccaccgcccatccagaacat
gctggacgaatacagagcatctggtcacggctgcaagaaactgggcttctaaataaatgt
gagcgaattcaaggtcgaaaagccagcctggaggaaatacagcttgttcattctgaacat
cattcactgttatatggcaccaatgccctggatgggcagaagcaggatccccggacgctc
ctaggtgatgcctctcaaaaaattttttcttcattaccttgtggtggacttggggtggac
agtgacaccatttggaatgagctgcattcgtccggcgctgcacgcatggctgttggctgt
gtcatcgagctggcttccaaagtggcctcaggagagctgaagaatgggtttgctattgtg
aggcccccaggccatcatgctgaagaatccactgccatggggttctgcttttttaattca
gttgcaattaccgccaaatacttgagagaccaactaaatataagcaagatattgattgta
gatctggatgttcaccatggaaacggtacacagcaggccttttatgctgaccccagcatc
ctgtatatttcactccatcgctatgatgaagggaactttttccctggcagtggagcccca
aatgaggttggaacaggccttggagaaggatacaatataaatattgcctggacaggtggc
cttgatccccccatgggagatattgaataccttgaagcattcaggactgtggtgacacct
gtggccaaagagtttgatccagacatggtcctagtttccgctggatttgacgcattagaa
ggccatgcccctcctttgggggggtataaagtgacagcaaagtgctttggccatttgatg
aagcaattgatgacactggcgaatggacacgtggtgttggctcttgaaggaggacatgac
ctcacagccatctgtgatgcatcagaagcctgtgtaaatgcccttctaggaaataagttg
gaaccacttgcagaagatattctccaccaaaccccgaatatgaatgctgttatttcttta
cagaagatcattgaaattcaaagcaagtattggaagtcagtaaggacggtacctctgcca
aggggttgttctttggctggggttcaattgcaagaggagacagagaccgtttctgccctg
gcttccctgacggtggatgtggaacagtcctttgcccaggaagatagcagaactgctggc
gagcctatggaagaggagccagccttgtga
DBGET
integrated database retrieval system
