Sorex fumeus (smoky shrew): 130027406
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Entry
130027406 CDS
T10594
Symbol
POLR1A
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
sfum Sorex fumeus (smoky shrew)
Pathway
sfum03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sfum00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
130027406 (POLR1A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sfum03021
]
130027406 (POLR1A)
Enzymes [BR:
sfum01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
130027406 (POLR1A)
Transcription machinery [BR:
sfum03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
130027406 (POLR1A)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
130027406
NCBI-ProteinID:
XP_055974137
LinkDB
All DBs
Position
Unknown
AA seq
1716 aa
AA seq
DB search
MLGSKNLPWRRLQGVSFGMYSAEELKKLSVKSITNPRYLDSLGNPSVNGLYDLALGPADS
KEVCSTCVQDFNNCSGHLGHIELPLTVYNPLLFDKLYLLLRGSCLNCHLLTCPRAVIHLL
VCQLRVLEVGALHAVYELERILSRFLEENPDPTGSEIQEELEQRTAEIVQDNHLGPHGAH
VKNVCESRSKLIAHFWKTHMTAKRCPHCKTGRSVVRKEHNSKLTITYPAIVHKKAGQDTE
PLGIEVAQMEKRGYLTPSTAREHLTAIWKNEGFFLSYLFSGLADVGMESRFNPSMFFLDF
LVVPPSRYRPVNRLGDQMFTNGQTVNLQAVMKDIVLIRKLLAVMAQEQELPQEVAEHAPE
EEKDASVAMDRSFLSLLPGQSLPDKLYNIWIRLQSHVNIVFDSEMDKLMMEKFPGIRQIL
EKKEGLFRKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELR
QAVINGPNVHPGASMVINEDGSRTALSAVDQTQREAVAKQLLTPATGTPKPQGTKIVCRH
VKNGDILLLNRQPTLHRPSIQAHQARILPEEKVLRLHYANCKAYNADFDGDEMNAHFPQS
ELGRAEAYILACTDQQYLVPKDGQPLAGLIQDHMVSGANMTIRGCFFTREQYMELVYRGL
TDKVGRVKIFPPAILKPCPLWTGKQVVSTLLINIIPEDHIPLNLSGKAKISGKAWVKDTP
RPVPGFNPDSMCESQVIIRAGELLCGVLDKAHYGSSAYGLVHCCYEVYGGQTSGRVLTCL
ARLFTAYLQLYRGFTLGVEDILVKPKADTERRRIVEESAGCGPRAVRAAFNLPEAASCDE
VRGKWQDAHLGKDQRDFNMIDLKFKEEVNHYSNEINKVCMPFGLHRQFPDNNLQMMVQSG
AKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTGIRP
PEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLSVRDSDGSVVQFLYGE
DGLDIPKTQFLQPKQFPFLASNYEVIMKSKHLHEVLSRADPQKALRHFRAIKKWQSKHSG
GPLRRGAFLNYSQKMQAAVKAAGLEGANQNGRSPDTQQMLSMWYELDEQSRRKYQKRAAP
CPDPSLAVWRPDIYFASVSETFEKKMDDYSREWAAEAEQSHGRSALSLDSLRTLLQLKWQ
RALCDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASSNIKT
PMMSVPVFNTKKALKRAKSLKKQLTRVCLGEVLQKIDVQESFCVGEKQSKLRVYRLRFEF
LPHAYYQQEKCLRPEDILHFMETRFFKILMESIRKKNSKASAFRNVNTRRATQRDLDRDG
EAEQDRGEQDGEEEEGRIVDAEAEEGDADASDAKRKEKQQEEVDYESEEEEEKGGEEDEE
ERPEEEAAHLENTHKAPEQEQEEEAGASAKGDEPPEGPLSQQQRTARRREPQAAENRVRA
VLECHPFIHEYEFDTERSLWCEVTLKLPLMKINFDMSSLVVSVAHNAVVYATKGITRCLL
NETTNSRHEKELVLNTEGINLPELFKYAEVLDLRRLYSNDIHAMANTYGIEAALRVIEKE
IRDVFAVYGIAVDPRHLSLVADYMCFEGVYKPLNRFGIRSNSSPLQQMTFETSFQFLKQA
TMMGAHDELRSPSACLVVGKVVKGGTGLFELKQPLT
NT seq
5151 nt
NT seq
+upstream
nt +downstream
nt
atgttgggttcaaagaacttgccctggcggcggctgcagggcgtttccttcgggatgtat
tcggctgaagagctcaagaaactaagtgtcaagtcgatcacaaatcctcggtacctggac
agcctgggcaacccgtcagtgaatggcctatatgacctggctctgggccctgcggactcc
aaggaggtgtgttccacctgtgtgcaggacttcaacaactgttccgggcacctgggccac
atcgagctcccactcaccgtctacaacccgctgctcttcgacaaactctacctgctgctc
cggggctcttgcttaaactgtcacttgctgacctgcccccgtgctgtgattcatctctta
gtgtgtcagctgagagttctggaagttggggccttgcacgccgtctatgagctggagaga
attcttagcaggtttctggaagaaaatcctgacccgactggctctgaaattcaggaggag
ttagagcagcggacagccgagatcgtgcaggacaaccacctggggccccatggcgcacac
gtaaaaaatgtttgtgagagcaggagcaaactcatcgctcacttctggaagacgcacatg
actgccaagaggtgtccgcactgcaagaccgggcggtcagttgtccgaaaggaacacaac
agcaaactgacaatcacgtaccccgccatagtgcacaagaaagctggccaggacacagag
ccactgggaattgaggtggcgcagatggagaagagagggtacttgactcccagcaccgcc
cgggagcatctcactgccatctggaagaatgaaggattctttctgagttacctgttttcg
ggactggcagatgttggcatggagtccagattcaatcccagtatgttcttcctggatttc
ttggtggtgccaccctcaagataccgccctgtcaatcgcttgggggaccagatgttcact
aatggccagacggtgaacctgcaggcagtcatgaaggacatcgttctcatccggaagctg
ctggcagtgatggcccaagaacaggagctgccccaggaggtggcagaacacgcccccgag
gaggagaaagatgcttctgttgccatggaccggtcctttctgagtttgctgcccggccag
tccctcccagacaaactttacaacatttggattcgccttcagagccacgtcaatattgtg
tttgatagtgagatggacaaattgatgatggaaaaattccctggtatcaggcagatccta
gagaagaaggaaggcttgttccgaaagcacatgatgggaaagcgtgtggactacgcagcc
cgctcggtcatctgcccggacatgtacatcaacaccaatgagattggaatccccatggtg
tttgccaccaaactgacctacccgcagccagttaccccctggaacgtacaggaactgagg
caggcggtcatcaacggccctaacgtgcacccaggggcctccatggtcatcaacgaggat
ggcagccgcacggccctgagcgcggtggaccaaacccagcgggaagctgtcgccaaacag
ctgctgacaccagccacagggacaccgaagccccagggcaccaagattgtgtgccggcac
gtgaagaatggggacattctcctgctgaaccgccagcccaccctgcacagaccctccatc
caggcacaccaggctcgcatcctgcccgaagagaaagtcctgcggctccattatgccaac
tgcaaggcctacaacgcggacttcgatggcgacgagatgaatgctcacttcccccagagc
gagctgggccgggccgaagcttatatcctggcctgcacagaccaacagtaccttgtgccc
aaggacggtcagccattggcagggttgatccaggatcacatggtatcgggtgcgaacatg
accattcgaggatgctttttcacccgggagcagtacatggagctggtgtaccgaggactc
accgacaaagtggggcgtgtgaaaatcttccctcctgccatcttgaagccctgtccactg
tggacgggaaagcaggtcgtgtccacgctgctcatcaacatcatcccagaggaccacatc
cccctgaacctgtcggggaaggcaaagatcagcgggaaggcctgggtgaaggacacgccg
cggccggttcctggctttaaccccgactccatgtgcgagtcccaggtgatcatcagggcc
ggggagctgctctgcggggtgctggacaaggcgcattacggcagctcagcctacggtctg
gtgcactgctgctacgaggtctacgggggccagaccagcggccgcgtcctcacctgcctg
gcccggctcttcactgcctacctgcagctctacaggggcttcaccttgggtgtggaagac
attttggtgaagccgaaggcggatactgagaggcgccggattgttgaagagtctgcaggc
tgcgggccccgggccgtcagggcagccttcaacctgcccgaggctgcgtcatgtgatgag
gtccgagggaagtggcaggatgcccatctgggcaaagaccagcgggattttaacatgatc
gatctgaagttcaaggaggaagtgaaccattacagcaacgagattaacaaggtatgcatg
cccttcggcctgcaccggcagttcccagacaacaacctgcagatgatggtacagtccgga
gccaaagggtccaccgtgaataccatgcagatctcctgcctgctggggcagatcgagctg
gaaggtcgcagacccccactcatggcatccggcaagtcgctgccctgcttcgagccttac
gagttcacccccagggcgggtggcttcgtcaccggcaggttcctcacgggcatcaggcct
ccggaattcttcttccactgcatggcaggacgagagggtctggtggacactgccgtgaaa
accagccgctcgggctacctccagaggtgtatcatcaagcacctggagggcctggtggtc
cagtacgacctatcagtccgggacagcgacggcagcgtggtgcagttcctgtacggggag
gacggcctggacatccctaagacacagttcctgcagcccaagcagttccccttcctcgcc
agcaactatgaggtgatcatgaaatcgaagcacctccatgaagttttgtccagggcggac
ccccagaaagccctgcgccatttcagagctatcaagaagtggcaaagcaagcactccggc
ggcccgctgaggagaggcgccttcctgaattactcccagaaaatgcaggctgcagtgaag
gctgccggcctcgagggagcaaaccagaatggtcgcagccctgacactcagcagatgctg
agtatgtggtatgagttagacgagcagagtcggaggaagtaccagaaacgggcagcgccg
tgcccagaccccagcctagccgtctggcgcccagacatctactttgcttctgtgtcggag
acgtttgagaagaagatggatgactacagtcgcgagtgggcagctgaggccgagcagagt
cacgggaggtcggcactttctctcgacagccttaggactctgctgcaactgaagtggcag
cgcgccctctgcgacccaggcgaggccgtgggactgctggcggcccagagcatcggggag
ccctccacacagatgaccctcaacaccttccacttcgcaggcagaggcgagatgaacgtc
accctgggcataccaaggttgcgggagattctcatggtggccagctccaacatcaagacc
cccatgatgagcgtgccagtgttcaacaccaagaaagcactgaagagagcgaagagcctg
aagaagcagctcaccagggtgtgcttaggagaggtgctgcagaagattgatgtccaggag
tccttctgtgtcggggagaagcagagcaagttgcgggtgtaccggttgcggtttgagttc
ctgccccatgcgtactaccagcaggagaagtgcctgcgacctgaggacatcctgcacttc
atggagaccagattctttaaaatcctgatggaatccatcagaaagaagaatagcaaagcc
tccgcgttcagaaatgtaaacacgcgaagagccacccagcgggaccttgaccgggatgga
gaggcggagcaggacaggggagagcaggacggggaggaggaggagggccgcatcgtggac
gcggaagccgaggagggcgatgctgatgcctcggatgccaagcgcaaggagaagcagcag
gaggaggtggattacgagagcgaagaagaggaggagaaaggaggggaggaggacgaggag
gaacggccagaggaggaggctgcgcatctggaaaacacccacaaggccccagagcaggag
caggaggaggaagcgggtgccagcgccaaaggagacgaaccacccgagggccccctgagc
cagcagcagaggacggcccgccgccgagagccccaggccgccgagaatcgtgtgcgggcc
gtgctcgagtgccaccccttcatccatgagtacgagttcgacacggagcggagcctgtgg
tgcgaggtgacattgaagctccctctgatgaagatcaactttgacatgagctccctggtc
gtgtccgtggcccacaacgccgtcgtctatgcgaccaagggcatcactcggtgtctcctg
aacgagaccaccaacagccggcacgagaaggagcttgtcttaaatacggaaggcatcaac
ctcccggagctgttcaagtacgctgaggtgctggatttgcgtcgcctctactccaacgac
atccatgccatggccaacacctacggcatcgaggctgcgctgcgcgtcatcgagaaggag
atccgggacgtgtttgccgtgtatggcatcgcggtggatccccgccacctctccctggtt
gcggactacatgtgcttcgagggcgtgtacaagccgctgaatcgtttcgggatccgctcc
aactcctccccgctgcagcagatgacgttcgagactagtttccagtttctgaaacaggcc
accatgatgggagcccacgacgagctgcggtccccctcagcctgcctcgtggtcggaaag
gtcgtcaagggaggaacaggcctgttcgagctcaagcagcccctgacatag
DBGET
integrated database retrieval system
