Sorex fumeus (smoky shrew): 130028517
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Entry
130028517 CDS
T10594
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
sfum Sorex fumeus (smoky shrew)
Pathway
sfum03013
Nucleocytoplasmic transport
sfum03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sfum00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
130028517 (UPF1)
03015 mRNA surveillance pathway
130028517 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sfum03019
]
130028517 (UPF1)
Enzymes [BR:
sfum01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
130028517 (UPF1)
5.6.2.5 RNA 5'-3' helicase
130028517 (UPF1)
Messenger RNA biogenesis [BR:
sfum03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
130028517 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
130028517 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
ATPase
nSTAND3
NAT10_TcmA_helicase
DEAD
UvrD-helicase
SRP54
AAA_16
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
130028517
NCBI-ProteinID:
XP_055975184
LinkDB
All DBs
Position
Unknown
AA seq
1132 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGGPGAGGAGAAG
AAGAAGQLDAQVGGPEGILQNGAVDESVAKTSQLLAELNFEEDEEDTYYTKDLPVHACSY
CGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYN
CGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKI
PSEQEQLRARQITAQQINKLEELWKENPCATLEDLEKPGVDEEPQHVLLRYEDAYQYQNI
FGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGNEDLVIIWLRDM
RLMQGDEICLRYKGDLAPLWKGIGHVIKVPDRQDLTRVADYGDEIAIELRSGVGAPVEVT
HNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIVKCQLPKRFTAQ
GLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIA
VDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGE
LSSADEKRYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPEC
MVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHP
ALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLN
RTEAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASV
DAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWN
HLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSV
YDRSSQGRPSSMYFQTHDQIGMIGAGPSHVAAMNIPIPFNLVMPPMPPPGYFGQANGPAA
GRGTPKGKTGRGGRQKHRFGLPGPGPAALPSSQASQDAVSQAFSQGALTQAYISMSQPSQ
MSQPGLSQPELSQDSYLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3399 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtacgggcccagctcgcagacgctcaccttcctggacacggaggag
gccgagctgctgggcgccgacacgcagggctccgagttcgagttcaccgacttcaccctc
cccagccagacgcagacgccccccggcggccccggcgcgggcggagcgggcgcggcgggc
gcggcgggcgcggccggacagctggacgcgcaggtgggcgggcccgagggcattctgcag
aatggggctgtggacgagagtgtggccaagaccagccagctgttggccgagctcaacttt
gaggaagatgaggaggacacgtactacacgaaggacctccctgtgcacgcctgcagctac
tgtggcatccatgacccggcgtgcgtggtatactgcaacaccagcaagaaatggttctgc
aatggccgcggaaacacttccggcagccacatcgtgaatcacctggtgcgagccaagtgc
aaggaggtgacactgcacaaggacgggcccctgggcgagacggtgcttgaatgctacaac
tgcggctgccgcaacgtcttcctgctcggcttcatccccgccaaggccgactcggtggtg
gtgctgctgtgccgccagccctgtgccagccagagcagcctcaaggacatcaactgggac
agctcgcagtggcagcccctcatccaggaccgctgtttcttgtcatggctggtgaagatc
ccgtcggagcaggagcagctgcgggcccggcagatcacagcccagcagatcaacaagctg
gaggagctgtggaaggagaacccgtgcgccacgctggaggacctggagaagccgggcgtg
gacgaggagccacagcacgtgctgctgcgctacgaggacgcctaccagtaccagaacatc
ttcgggccgctcgtcaagctggaggccgactacgacaagaagctcaaggagtcccagact
caagataacatcacggtcaggtgggacctgggccttaacaagaagagaatcgcctacttc
actttgcccaagactgactctggtaatgaggatttagtcataatttggttaagagacatg
cggctcatgcagggggatgagatctgcctgcgctacaagggggacctggcgcccctgtgg
aagggcatcggccacgtcatcaaggtcccggacagacaggacttaactcgcgtcgcagat
tatggcgacgagattgccattgagctgcgcagcggggtgggcgcgcccgtggaggtgacc
cacaacttccaggtggacttcgtgtggaagtccacgtccttcgacaggatgcagagtgcc
ctgaagacgtttgcggtggacgagacatcggtgtccgggtacatctaccacaagctgctg
ggccacgaggtggaggacgtgatcgtgaagtgccagctgcccaagcgcttcacggcccag
gggctcccggacctcaaccactcacaggtgtacgccgtgaagaccgtgctgcagaggccg
ctgagtctgatccagggcccgcccggcacgggcaagaccgtcacctcggccaccatcgtc
taccacctggcgcggcagggcaatgggcccgtgctcgtgtgcgcgcccagcaacattgcg
gtggaccaactgaccgagaagatccaccagactgggctgaaggtggttcggctctgcgcc
aagagccgcgaggccattgactcacctgtgtccttcctggccctgcacaatcagatccgg
aacatggacagcatgccggagttgcagaagctgcagcagctcaaggacgagacgggggag
ctgtcgtcagcagatgagaagcggtaccgcgccctgaagcgcacagccgagcgggagctg
ctcatgaatgccgatgtcatctgctgcacgtgtgtgggggctggcgacccccggctggcc
aagatgcagttccgctccatcctcatcgacgagagcacgcaggcgactgagcccgagtgc
atggtccctgtagtcctgggggccaagcagctcatcctcgtgggcgaccactgccagctg
ggccccgtggtgatgtgcaagaaggcggccaaggccgggctctctcagtcactgtttgag
cgcctggtggtgctgggcatccggcccatccgcctgcaggtgcagtaccgcatgcatcct
gcgctcagcgccttcccttccaacattttctatgagggctccctgcagaacggcgtcacc
gcggcggaccgagtgaagaaaggctttgacttccagtggccacagcctgacaagccgatg
ttcttctacgtgacacagggccaggaggagattgccagctcgggcacctcctacctcaac
cggacggaggcggccaacgtggagaagatcaccacgaagctgctcaaggcgggggccaag
cccgaccagatcggcatcatcacgccctacgagggccagcgctcctacttggtgcagtac
atgcagttcagcggctccctgcacaccaagctctaccaggaggtggagatcgccagcgtg
gacgccttccagggccgtgagaaggacttcatcatcctgtcgtgcgtgcgtgccaacgag
caccagggcatcggcttcctcaatgaccctcggcggctgaatgtggcgctgacgcgtgcg
cggtacggggtgatcatcgtgggcaaccccaaggccctgtcgaagcagccgctgtggaac
cacctactgaactactacaaggagcagaaggtgctggtcgaggggcccctcaacaacctg
cgcgagagcctcatgcagttcagcaagccccggaagttggtcaacaccatcaacccgggc
gcccgcttcatgaccacggccatgtatgacgcccgcgaggccatcatcccgggctccgtg
tacgaccgcagcagccagggccggccctccagcatgtacttccagacccacgaccagatc
ggcatgattggtgcgggcccgagccacgtggccgccatgaacatccccatccccttcaac
ctggtcatgccgcccatgccgccgcccggctacttcggacaggccaacgggccggctgca
ggccggggaactcccaaaggcaagacggggcgcgggggccgccagaagcaccgcttcggc
ctgccgggaccgggccccgctgccctgcccagcagccaggccagccaggatgccgtgtcg
caggccttctcgcagggcgcgctcacgcaggcctacatctccatgagccagccctcgcag
atgagccagcccggcctctcgcagcccgagctctcccaggacagctacctcggcgacgag
ttcaagtcccagattgacgtggccctgtcccaggactccacataccagggcgagcgggcc
taccagcacgggggcgtgacggggctgtcccagtactag
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