Sorex fumeus (smoky shrew): 130028544
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Entry
130028544 CDS
T10594
Symbol
SMARCA4
Name
(RefSeq) transcription activator BRG1 isoform X1
KO
K11647
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
Organism
sfum Sorex fumeus (smoky shrew)
Pathway
sfum03082
ATP-dependent chromatin remodeling
sfum04714
Thermogenesis
sfum05225
Hepatocellular carcinoma
Brite
KEGG Orthology (KO) [BR:
sfum00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
130028544 (SMARCA4)
09150 Organismal Systems
09159 Environmental adaptation
04714 Thermogenesis
130028544 (SMARCA4)
09160 Human Diseases
09162 Cancer: specific types
05225 Hepatocellular carcinoma
130028544 (SMARCA4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sfum03021
]
130028544 (SMARCA4)
03036 Chromosome and associated proteins [BR:
sfum03036
]
130028544 (SMARCA4)
Transcription machinery [BR:
sfum03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
130028544 (SMARCA4)
Chromosome and associated proteins [BR:
sfum03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
REST complex
130028544 (SMARCA4)
Chromatin remodeling factors
BAF complex
130028544 (SMARCA4)
PBAF complex
130028544 (SMARCA4)
GBAF(ncBAF) complex
130028544 (SMARCA4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
SnAC
Bromodomain
HSA
BRK
QLQ
ResIII
HDA2-3
DEAD
DUF2009
Motif
Other DBs
NCBI-GeneID:
130028544
NCBI-ProteinID:
XP_055975221
LinkDB
All DBs
Position
Unknown
AA seq
1641 aa
AA seq
DB search
MSTPDPPLGGTPRPGPSPGPGPSPGAMLGPSPGPSPGSAHSMMGPSPGPPSAGHPISTPG
PGGYPQDNMHQMHKPMESMHEKGLSDDPRYGQMKGLGLRSGGHAGMGPPPSPMDQHSQGY
PSPLGGSEHASSPVPASGPSSGPQMASGPGGAPLDAADPQALGQQNRGPTPFNQNQLHQL
RAQIMAYKMLARGQPLPDHLQMAVQGKRPLPAMQQQMPTLPPPSVSAAGPGPGPGPGPAP
PNYSRPHGMGGPNMPPPGPSGVPPGMPGQPPGGPPKPWPDGPLANAAAPTSTPQKLIPPQ
PTGRPSPAPPAVPPAASPVMPPQTQSPGQPAQPAPMVPLHQKQSRITPIQKPRGLDPVEI
LQEREYRLQARIAHRIQELENLPGSLAGDLRTKATIELKALRLLNFQRQLRQEVVVCMRR
DTALETALNAKAYKRSKRQSLREARITEKLEKQQKIEQERKRRQKHQEYLNSILQHAKDF
KEYHRSVTGKIQKLTKAVATYHANTEREQKKENERIEKERMRRLMAEDEEGYRKLIDQKK
DKRLAYLLQQTDEYVANLTELVRQHKAAQVAKEKKKKKKKKKAENAEGQTPAIGPDGEPL
DETSQMSDLPVKVIHVESGKILTGTDAPKAGQLEAWLEMNPGYEVAPRSDSEESGSEEEE
EEEEEEQPQPAQPPALPVEEKKKIPDPDSDDVSEVDARHIIENAKQDVDDEYGVSQALAR
GLQSYYAVAHAVTERVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKT
IQTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVP
QLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRR
LLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIR
RLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDK
KGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDLYRASGKFELLD
RILPKLRATSHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPG
SEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCT
VNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQDESRHCGPGS
GSASLAHSAPPPAGLNPDLEEPPLKEEDEVPDDETVNQMIARHEEEFDLFMRMDLDRRRE
EARNPKRKPRLMEEDELPSWIIKDDAEVERLTCEEEEEKMFGRGSRHRKEVDYSDSLTEK
QWLKAIEEGTLEEIEEEVRQKKSSRKRKRESDAGPSTPTASTRSRDKDDESKKQKKRGRP
PAEKLSPNPPSLTKKMKKIVDAVIKYKDSSSGRQLSEVFIQLPSRKELPEYYELIRKPVD
FKKIKERIRNHKYRSLNDLEKDVMLLCQNAQTFNLEGSLIYEDSIVLQSVFTSVRQKIEK
EDDSEGEESEEEEEGEEEGSESESRSVKVKIKLGRKEKAQDRLKGGRRRPSRGSRAKPVV
SDDDSEEEQEEDRSGSGSEED
NT seq
4926 nt
NT seq
+upstream
nt +downstream
nt
atgtccacccctgacccgcctctgggcgggacccctcggccaggaccctcccctggcccc
ggcccctccccgggagccatgctgggccctagccctgggccctctcctggctctgcccac
agcatgatggggcccagcccaggccccccgtcggcaggacaccccatctccacgccaggg
cccggcggatacccgcaggacaacatgcaccagatgcacaagccaatggagtccatgcac
gagaagggcctctccgatgacccccgctatggccagatgaagggtttgggcctgcggtcc
gggggccacgccgggatggggcccccgcccagccccatggaccagcattctcaaggttac
ccctcacccctgggtggctccgagcacgcctccagccccgtgcccgccagcggcccatcc
tccggcccccagatggcatccgggcccggaggcgccccactcgatgccgccgacccacag
gccttgggccagcagaaccggggcccgaccccattcaaccagaaccagctgcaccagctg
cgggcgcagatcatggcctacaagatgctggcccgggggcagcccctgcccgaccatctg
cagatggcggtgcagggcaagcggcccctgccggccatgcagcagcagatgcccacgctg
cccccgccctccgtgtctgctgcagggcctgggcccggccctggccccggccctgcacca
cccaactatagccgccctcacggtatgggcggacccaacatgcccccaccaggaccctca
ggcgtgccccccgggatgccgggccagccccctggagggcctcccaagccctggcctgat
gggcccctggccaatgctgctgctcccaccagcacacctcagaagctgattcccccgcag
ccgacgggccgcccctcacccgcgccccccgctgtcccgcctgctgcctcgcccgtgatg
ccaccgcagacacagtcccctgggcagccggcccagcccgcgcccatggtgccactgcac
cagaagcagagccgcatcacccccatccagaagccgcggggcctggaccccgtagagatc
ctgcaggagcgcgagtacaggctgcaggcgcgcatcgcacaccgaattcaggaactcgaa
aacctccccggctccctggccggagatctgcgaaccaaagcgaccatcgagctcaaggct
ctccggctgctcaacttccagaggcagctgcggcaggaggtggtggtgtgcatgcggcgg
gacacggccctcgagacggcgctcaacgccaaggcctacaagcgcagcaagcgacagtcc
ctgcgcgaggcccgcatcacggagaagctggagaagcaacagaagatcgagcaggagcgg
aagcgccggcagaagcaccaggaatacctcaacagcatcctccagcacgccaaggacttc
aaggagtaccaccgctcggtgacaggcaagatccagaagctgaccaaggcggtggccacc
taccacgccaacacggagcgcgagcagaagaaggagaacgagcgcatcgagaaggagcgc
atgcggcggctcatggcggaggacgaggagggctaccgcaaactcattgaccagaagaag
gacaagcggctggcctacctcctgcagcagacagacgagtacgtggccaacctcaccgag
ctggtgcgccagcacaaggccgcgcaggtggccaaggagaagaagaagaagaagaagaag
aagaaggcagaaaacgcagagggacagacgcccgccatcggccctgatggggagcccttg
gatgagacgagccagatgagcgacctgccggtgaaggtgatccatgtggagagcggcaag
atcctcacgggcacggatgcccccaaggcaggccagctggaggcctggctcgagatgaac
ccggggtacgaggtggctcccagatcggacagcgaggaaagcggctccgaagaggaagag
gaggaggaggaggaggagcagccgcagcctgcacagccgcccgcgctgcccgtggaggag
aagaagaagattccagaccctgacagcgatgacgtctctgaggtggacgcccgccacatc
atcgagaatgccaagcaggatgtggatgacgagtacggcgtgtctcaggccctggcgcgc
gggctgcagtcctactacgccgtggcccacgccgtcactgagcgcgtggacaagcagtct
gcgctcatggtcaacggcgtgctcaagcagtaccagatcaagggcctggagtggctggtg
tctctgtacaacaacaacctgaacgggatcctggccgacgagatgggcctgggcaagacc
atccagaccatcgcgctcatcacatacctcatggagcacaagcgcatcaacggccccttc
ctcatcatcgtgccgctctcgacactgtccaactgggcatatgagttcgacaagtgggcc
ccgtctgtggtgaaggtgtcctacaagggctcccccgccgcccggcgcgcctttgtgcca
cagctccgcagtgggaagttcaatgtgctgctgaccacgtacgagtacatcatcaaggac
aagcacatcctggccaagatccgctggaagtacatgatcgtggacgagggccaccgcatg
aagaaccaccactgcaagctgacgcaggtgctgaacacgcactacgtggccccccgccgc
ctgctgctcacgggcaccccgctgcagaacaagctccccgagctgtgggcgctgctcaac
ttcctcctccccaccatcttcaagagctgcagcacgttcgagcagtggttcaacgcgccc
ttcgccatgacaggcgagaaggtggacctgaacgaggaggagacaatcctcattatccgg
cgacttcacaaggtgctgcggcccttcctgctgcggcgcctcaagaaggaggtcgaggcg
cagctgcccgagaaggtggagtacgtcatcaagtgcgacatgtcggcgctgcagcgcgtg
ctgtaccgacacatgcaggccaagggcgtgctgctcaccgacggctccgagaaggacaag
aagggcaagggcggcaccaagacgctcatgaacaccatcatgcagctgcgcaagatctgc
aaccacccctacatgttccagcacatcgaggagtccttctccgagcacctgggcttcact
ggtggcattgtgcaggggctggacctgtaccgtgcctccggcaagttcgagctgctggac
cgcatcctgcccaagctgcgagccaccagccacaaagtgctgctcttctgccagatgacc
tcgctcatgaccatcatggaggactacttcgcctaccgcggcttcaagtatctgcgcctg
gacggcaccaccaaggctgaggaccgggggatgctgctgaagaccttcaacgagccgggc
tccgagtactttatcttcttgctgagcacacgtgctggcggcctgggcctcaatctgcag
tcggccgacaccgtcatcatcttcgacagcgactggaacccgcaccaggacctgcaggca
caggaccgcgcccaccgcattgggcagcagaacgaggtgcgcgtgctgcgcctgtgcacg
gtcaacagcgtggaggagaagatcctggcggctgccaagtacaagctcaacgtggaccag
aaggtgatccaggcgggcatgttcgaccagaagtcctcgagccacgagcgccgcgccttc
ctgcaggccatcctggagcacgaggagcaggacgagagcagacactgcggcccgggcagc
ggcagtgccagcctcgcccactctgcccctccgcccgcgggcctcaaccccgacctggag
gagccacctctaaaggaggaagatgaggtgcccgacgatgagaccgtcaaccagatgatc
gcccggcatgaggaggagttcgacctgttcatgcgcatggacctggaccgcaggcgcgag
gaggcccgcaaccccaagcggaagccacggctgatggaggaagacgagctgccgtcgtgg
atcatcaaggacgacgccgaggtggagcggctgacgtgcgaggaggaggaggagaagatg
ttcggacgcggctcgcggcaccgcaaggaggtggactacagcgactcgctcaccgagaag
cagtggctgaaggccatcgaggagggcacgctggaggagatcgaagaggaggttcggcag
aagaagtcgtcgcgcaagcgcaagcgggagagtgacgccggcccctccaccccgacggcc
agcacgcgcagccgcgacaaggacgacgagagcaagaagcagaagaagcgcgggcggcca
ccagccgagaagctctcgcccaacccgcccagcctcaccaagaagatgaagaagattgtg
gatgccgtgatcaagtacaaggacagcagtagcggccggcagctgagcgaggtcttcatc
cagctcccctcccgcaaggagctgccggagtactacgagctcatccgcaagcctgtggac
ttcaagaagataaaggagcgcatccgcaaccacaaataccgcagcctcaacgacctggag
aaggacgtgatgctgctgtgccagaacgcgcagaccttcaacctggagggctcactgatc
tacgaagactccatcgtgctgcagtccgtgttcaccagtgtgcggcagaaaatcgagaag
gaggatgacagcgagggcgaggagagcgaggaagaggaggagggtgaagaggaaggctct
gagtctgagtcccgctccgtgaaggtgaagatcaagctgggccggaaggagaaggcacag
gaccggctcaaggggggtcggcgacggccgagccgggggtctcgggccaagccagtggtg
agcgacgacgacagtgaagaggagcaggaggaggaccgttcaggaagtggcagcgaggaa
gactga
DBGET
integrated database retrieval system
