Sorex fumeus (smoky shrew): 130028742
Help
Entry
130028742 CDS
T10594
Symbol
COL18A1
Name
(RefSeq) collagen alpha-1(XVIII) chain isoform X1
KO
K06823
collagen type XVIII alpha
Organism
sfum Sorex fumeus (smoky shrew)
Pathway
sfum04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
sfum00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
130028742 (COL18A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sfum04147
]
130028742 (COL18A1)
00535 Proteoglycans [BR:
sfum00535
]
130028742 (COL18A1)
00536 Glycosaminoglycan binding proteins [BR:
sfum00536
]
130028742 (COL18A1)
Exosome [BR:
sfum04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
130028742 (COL18A1)
Proteoglycans [BR:
sfum00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
130028742 (COL18A1)
Glycosaminoglycan binding proteins [BR:
sfum00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
130028742 (COL18A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
DUF959
Laminin_G_3
GEN1_C
Motif
Other DBs
NCBI-GeneID:
130028742
NCBI-ProteinID:
XP_055975551
LinkDB
All DBs
Position
Unknown
AA seq
1456 aa
AA seq
DB search
MAADPRGLGRLLLFLGCLAAAQPQMLDWLRIPAAGPPLEAHTGPPPLEVQEGAQTVGSGR
KDDNLALVGDKILHVAEGIRSFVQLWSDILPTLSPTMEETPGPVTPAGTLAPLGPAGSPQ
MGPDLQPSPRETSSRDSPSVLPRPTGPPPSWFREPLGPSMWSPDTVGAEVGLLQLLGEPP
PPQVTAVEDPDVGPAFLFGPDSNSGQTARTHFSSRFFPDFALLLRVRPDSERAGVLFAIT
DAAQAVVAVGVKLGAVTEGHQEVQLLYTEPGALATRVAAAFHLPAFPGHWVRLALSVRGQ
SATLFVDCKEVQWLPLAREPHGLQLEPGAGLFVAQAGAADPDKFQGAIAELRIRRDPHVT
PQLCLEDEEDDRDDDDGASGDVGSGTEEQMAPGSEDRGSSPESSLPETPPVTSPPLARDN
DREDSRMEETGETEETALPSVETLPPAQTLPDSAKAAMWNSSIPNPESRWAEGGLKGQKG
EPGPQGPPGPAGPTLRTPSIQPVPGPQGPPGPPGPPGENGTPGKDGERGSPGEDGRPGDK
GLQGFPGTPGDVGPKGEKGDPGIGARGPPGPQGPPGPPGPPFRPDRLTFIDMEGSGFSGD
QESFRGPRGYPGPPGPPGVPGLPGEPGRFGLNSSVVPGPAGLPGVPGRKGLPGPPGPQGP
SGPPGKSGRPGPMGAKGSPGEAGTPGPKGSKGDSGPMGAPGRNGLAGAPGPAGPPGPPGP
PGPPGPALAAGFDDMEGSGVPFWVPSQGAGNRQGVAGPPGAKGDPGPVGPPGSKGEVGAE
GVRGFPGLPGREGAAGARGLKGDKGSRGEKGDPGRDGVGQPGLPGPPGPPGQVVYVSEQD
RAVASVPGPEGRPGFAGFPGPAGPKGDLGSKGQQGPPGPKGEKGEPGAVFGPDGRTVAPA
QKGAKGEPGFRGPPGPYGRPGYKGDIGFPGRPGRPGVNGLKGEKGEPGDASIGFGVQGPP
GPPGPPGPPGLPGKPVYDSNAFVDSSRPGPPGLPGFRGPSGPKGDKGEVGPPGAPGQFPL
DFFQLGAEMKGEKGDRGDVGQKGERGEPGVGGGFFGSSVPGPPGPPGYPGIPGPKGESIR
GQPGPPGPQGPPGIGYEGRQGPPGPPGPPGPPGPPSFPGPYRQTISVPGPPGPPGPPGPP
GNMGTSSGVRIWPTYQAMLDTAPEMPEGWLLYVADREELYVRVRRGFRKVLLEARTPLPR
GTDNEVAALQPPLVQMQEGNPYPRRESAPSTVRPWRADDILASPPRPQPYPGAPHHGAYV
HPRPARPTGPPAHVHLDFRPVLHLAALNSPQSGGLRGIRGADFQCFQQARAAGLSGTFRA
FLSSRLQDLHSIVRRADRDAVPIVNLKDEMLFSSWEALFSGSEAQLKPGARLFSFDGKDV
LRHPAWPHKSVWHGSDPSGRRLTESYCETWRTEAAGTVGQASPLQAGKLLGQKAVSCHSA
LVILCIENSVTSAASQ
NT seq
4371 nt
NT seq
+upstream
nt +downstream
nt
atggccgctgacccccgcggccttggccgcttgctcctgttcctgggctgcctggcggct
gcccagccccaaatgctggactggttgaggattccggccgctggcccaccccttgaggcc
cacacgggccccccacccctggaggtgcaggagggggcccagacagtgggttcgggcagg
aaggacgacaacctcgccctggtgggggacaagattctgcatgtggctgagggcatccgg
agcttcgtccagctgtggagcgacatcctgcccaccctgagccccaccatggaggaaacg
ccaggcccagtgacccccgcaggcaccctcgccccccttgggcctgctggaagcccccag
atggggccggatctgcagccgagccctagagagacgagttcccgggactcccccagcgtc
ctgcctaggcccaccgggccgcccccctcctggttcagggagcccttggggccgtccatg
tggtctccagacacggtgggagccgaggtagggctgctgcagcttctcggggagcccccg
ccaccgcaggtgaccgccgtggaggaccccgacgtgggccctgccttcctcttcgggcct
gactccaacagcgggcagacggcgcgcacgcacttctccagccgcttcttccccgacttc
gcgctgttgctgcgggtgcggcctgactcagagcgggcaggcgtgctgttcgccatcacc
gacgcggcgcaggccgtggtggctgtgggtgtcaagctgggtgccgtcaccgagggccac
caggaagtgcagctgctctacacggagcctggcgccttggccacccgcgtggcggccgcc
ttccacctgcccgccttccctggccactgggtgcgcctggcgctaagcgtgcgtgggcag
tcggccacgctctttgtggactgcaaggaggtgcagtggctgccgctggcacgcgaaccc
catggcttgcagctggagcctggcgctggcctcttcgtggctcaggcgggagcggctgac
cccgacaagttccagggggcaattgcagagctgaggatacgcagggacccccacgtgacc
ccacagctttgcctggaggatgaagaagatgacagagatgatgacgatggggcgtcgggg
gatgtgggcagcggcacggaggagcagatggcacctggcagtgaagacaggggctcatcc
ccagaaagcagcctccctgagacccccccagtcacgtctccacccttggccagagacaat
gacagggaagactccagaatggaagaaacgggagagacggaagagacagccctgccttca
gtagaaactctgcccccagctcagaccttgcctgacagcgctaaggccgccatgtggaac
agtagtatcccgaacccagagagccgctgggcagagggaggtctgaaggggcagaagggg
gagccaggccctcagggccccccaggcccagctggcccaacactgcggacccccagcata
cagcctgtgccagggccacagggcccccctggacccccagggccgccgggggagaatggc
acccctggaaaggatggtgagcggggaagccctggtgaagatggaagacccggtgacaag
gggctgcagggcttcccaggaactccaggcgacgtgggtcccaagggggagaagggggac
cctggaattggggcaagaggacccccaggaccgcaaggacctccgggacccccaggacca
cccttcaggcccgacaggctgaccttcatcgacatggagggctctggcttcagcggggac
caggagagcttccggggccccagaggctaccccggccccccaggacccccaggagtccca
ggcctgcccggagagcctggccgctttggactgaacagctcggtggtccctggacctgca
ggcctgcctggggtgcctgggaggaaaggactccctggcccccctggcccccagggaccc
tcaggtcctccaggaaaaagcgggcgtccaggcccaatgggtgcgaagggcagcccgggt
gaggcaggcaccccaggacccaagggaagcaagggggattctggccccatgggagctccc
gggagaaatggcttggcaggagccccaggaccagctggaccaccagggcccccaggcccc
cctggccctccaggcccagcactggctgcaggttttgatgacatggaaggttccggagtg
cccttctgggtaccatcacaaggtgcaggcaatcggcagggagtggctggtccgcctgga
gccaagggggaccctggcccagtggggccccccggatccaagggagaggtgggcgctgag
ggcgtccgcgggttcccaggccttccgggcagagagggcgctgctggcgcgcggggtctg
aaaggagacaaaggcagcagaggagagaagggcgacccgggcagagatggagtggggcaa
cctggcctccctggacccccaggacccccagggcaggtcgtctatgtctcggaacaggac
agagcggtggcctcagttccgggacctgagggcaggcctggctttgctggcttcccgggc
ccagcgggaccaaagggtgacctcggctccaaaggccagcagggccccccagggcccaag
ggtgagaagggggagccgggtgcagtcttcggccctgatggcagaacagtggcccccgcc
caaaaaggcgccaagggagagcccggcttccgtggacccccgggtccctatggacgacca
gggtacaagggggacattggctttccaggacggccgggacgcccaggggttaacggactg
aagggcgagaaaggggagcctggagatgccagcatcggcttcggtgtgcagggcccccct
ggccccccaggacctccagggcccccaggactccctgggaagcctgtgtacgacagtaac
gcatttgtggactcaagtcgtccaggacctccaggattgccaggtttccggggcccttca
ggaccgaagggcgacaaaggagaggtgggcccacctggagccccaggccagttcccgctc
gattttttccagctgggggccgagatgaagggcgagaagggggaccgaggggacgtgggg
cagaagggggagcgaggcgagcccggcgtgggtggcggattcttcggctccagcgtgcca
ggccctcccgggcccccgggctatcctggcatcccgggtcctaagggagaaagcattcgg
ggccagcctggcccacctggacctcagggcccccctggcattggctatgagggacgccag
ggcccacctggcccccctggccctcctgggccccccggcccaccatcatttcctgggccc
tacagacagaccatcagtgtcccagggccccctggaccccccgggccccctgggccccct
ggaaacatgggcacctcctcgggggtgcgcatctggcccacgtaccaggccatgctggac
actgcgcctgaaatgcctgagggctggctgctctatgtggctgatcgggaggagctatat
gtgcgtgtgcggcgtggcttccggaaggttctgctggaggcgcgaacgccactgccccga
gggacggacaacgaggtggccgcgctgcagcccccgctggtgcagatgcaggaggggaac
ccttacccgcggcgtgagtccgcgccctccaccgtgcgaccttggcgcgccgacgacatc
ctggccagcccgccgcgcccgcagccctaccccggtgccccgcaccacggtgcgtacgtg
cacccgcggcccgcgcgccccaccggtccacctgcccacgtgcacctggacttccggccc
gtgctgcacctggcggcgctcaacagcccgcagtcgggcggcctgcgcggcatccgcggc
gcggacttccagtgcttccagcaggcgcgcgccgcggggctgagcggcaccttccgcgcc
ttcctgtcgtcgcggctgcaggacctgcacagcatcgtgcggcgcgccgatcgtgacgcc
gtgcccatcgtcaatcttaaggacgaaatgctcttctccagctgggaggccctgttctcc
ggctccgaggcccagctgaagcctggcgcgcgcctcttctccttcgacggcaaagacgtc
ctgcgccaccccgcctggccgcataagagcgtgtggcatggctccgaccccagcggccgc
cggctgaccgagagctactgtgagacatggcggacggaggcagcaggcacagtgggccag
gcatccccgctacaggcaggcaagctgctgggacagaaggcagtgagctgccacagcgcc
ctggtcatcctctgcatcgagaacagtgtcacaagtgctgcctcccagtag
DBGET
integrated database retrieval system
