Sorex fumeus (smoky shrew): 130028923
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Entry
130028923 CDS
T10594
Symbol
NWD1
Name
(RefSeq) NACHT domain- and WD repeat-containing protein 1 isoform X1
KO
K24734
NACHT domain- and WD repeat-containing protein
Organism
sfum Sorex fumeus (smoky shrew)
Brite
KEGG Orthology (KO) [BR:
sfum00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
sfum04990
]
130028923 (NWD1)
Domain-containing proteins not elsewhere classified [BR:
sfum04990
]
Other domain-containing proteins
WD40 repeat (WDR) domain-containing proteins
130028923 (NWD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_WDR3_1st
Beta-prop_WDR5
Beta-prop_THOC3
WD40_Prp19
WD40
Beta-prop_EML_2
WD40_CDC20-Fz
Beta-prop_WDR3_2nd
WD40_WDHD1_1st
Beta-prop_TEP1_2nd
Beta-prop_WDR36-Utp21_1st
EIF3I
Beta-prop_WDR36-Utp21_2nd
WDR55
Beta-prop_EML
Beta-prop_CAF1B_HIR1
WD40_Gbeta
WHD_NWD1
NBCH_WD40
Beta-prop_WDR19_1st
ANAPC4_WD40
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_HPS5
Beta-prop_Aladin
Beta-prop_VPS8
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_1st
Beta-prop_RIG_2nd
Beta-prop_SCAP
Beta-prop_TEP1_C
PEP5_VPS11_N
Beta-prop_IFT140_1st
Beta-prop_NUP159_NUP214
NACHT
Beta-prop_WDR41
Beta-prop_ACSF4
Beta-prop_SPT8
WDR90_beta-prop_4th
Beta-prop_DCAF4
KNTC1_N
AAA_16
DUF4062
Beta-prop_LRRK2
AAA_22
Beta-prop_Nup120_160
Nucleoporin_N
NPHP3_N
AAA_5
AAA
Beta-prop_Vps41
Beta-prop_EIPR1
Mg_chelatase
Beta-prop_ELP1_1st
ATPase_2
AFG1_ATPase
Beta-prop_pof12
Motif
Other DBs
NCBI-GeneID:
130028923
NCBI-ProteinID:
XP_055975734
LinkDB
All DBs
Position
Unknown
AA seq
1602 aa
AA seq
DB search
MSLGHLSPGTRRRLLQGQAGPLPEPPASSVSIFLSSNGSDMDAEREALHSSACPEVQTFC
QKHGLMFEVVDLHWGVRSSEASAHMSPELCLEELERCQRTSLGPAFVALLGNQYGPCPLP
TLIEEKEWEVLRAQLTSRPGDLELVCRRFRKDENAVPPAFLLQTPGASEARSPEEPSVGS
VLRTAAQDALRLGLLSQEQCSRYHRSVMAWEMERGVLGPAGEQGATVFLREVQDLQRHIL
DDCALWLVDRLADGCLDTDAQRLLGDLKGRLTDTRPEALKAHQLPWSRDLVNPKNKAHGR
YLKELGEQFVARANHQVLERLREQEAAARPEPSWLFTEIRHHLALGAQATRVFCGRQDLL
ALLGQWLRQNHDGPHPPLLLWGPPGVGKTALLCRLAEQMPALLGRKTVTVLRLLGASGMS
TDAGGLLRGLCCQVCLAYGLPPPPGQVLAARARLVPFFHTLLHTVSSRHFESLVILLDSL
DDVDGGRWGRRVLWLPTQCPPRVHLILSACSGPRGALDAARRALPTAAEWEVPPLPAGQA
QELVQRLLAAARRSLSPGQRDLLWASLPECGHPGRLQLAFEEARRWASFTVPAPLAATAE
EATHQLCARLEQTHGRLLVASVLGYLAASRHGLSEAELKDILSLDDEVLQAVYRDWTPPS
RELLRFPPLLWVRLRRDLGHCLAQRPVDGFTLLGIAQRQLAEVVQARYLSGPEAAKRHGV
LADFFSGAWSQGTKKLITLPLVGKPLNLDRKVAAQPLWFSDSVANVRKLQELPLHLLRAG
RVQELKQEVLGSMNWISCRGVSGGLEALLDDFALCGPHVDCAEVDLVREALQLCRPAVEL
RGLDKCLLYTELLARLLYFSASHPALVGPLCQQAQSWFRQCPHPVLVPLAGFLQPPGGPL
LAILTGCHKGISAIAWSLEKQLLLVGTQDGTVAVWDTEEWQTVHVLTGHTGEVKGLEVLA
QGTLVISASRDHTLRLWDLQAGQEKFTIWDGGSQEPSEPQSWSLHVDGPGKVLYSVSSYK
VNAWHLETAELVFRILGDAGDPWMCAAILPAQAVLLTVSAGCMVSLWSSVTGKRQGKRPM
TSITDEVPTCGVPVQKRGTMVVGFSQGALCLVSSEEDRLLDTLSAAVGLLVASEDDSLLA
AGFGKSVRVFLADSQGFHRFMASDLEHEDTVSAAAFGLQNNLLVTGSQDTLIQVWSLSEQ
GALLAVLEGVGAPVSLLAAGGTLVASASQQSSSLKVWDLSRTQQQGPCVPFPDRTGLTAV
SHNGAFVYFPKIGDRNKVSIWDLAEGQEQDAVDTSNEVCCLEVAEQAQLLLAGLVSGVVL
VFPLRSRQDVLCIPPPEARRAVRCVALSKDERRLAVAYDHTVLVLDVSPGEPCPVIDGPI
YTFYTQLPETLARAAVLADCRVLYGMSDGSLYVYECAGARVSQLEAHAGRVTCLEVSHRE
QLAVSGSEESRLCLWDLQACKWKLELSYTSSFCRGVQCACFSRDDKHVFAGLKDRSVIVW
SVQDGTLLAVQFVHAVVNRIIPTSNGFVAPTRHGHLIRQRFQCPAARVSQQDPLKNFKKA
VWMVKCRQREELAAGEEAPQDAEGLREDEAKCHRRSQVCLLL
NT seq
4809 nt
NT seq
+upstream
nt +downstream
nt
atgagcctggggcacctcagcccaggcacccgccggcggctcctacagggccaggctggg
cccctgccagagcccccggccagcagcgtgtccatctttctcagctccaacggctcggac
atggacgccgagagagaggccctgcacagtagcgcctgccctgaggtgcagaccttctgc
cagaagcacgggctgatgtttgaggtggtggacttgcactggggcgtccggagcagcgag
gcttctgcacacatgagccctgagttgtgtctggaggagctcgagcgctgccagaggaca
tcgctgggcccagcgtttgtggcgctgctggggaaccagtatgggccctgcccgctgccc
actctcattgaggagaaggagtgggaggtgctgagagcccagttgaccagcaggcccggc
gacctggagctggtgtgtcggcgcttccgtaaggacgagaacgcagtgccgccagccttc
ctgctgcagacgcctggcgcgtctgaggcccgcagccccgaggagcccagcgtgggctcc
gtgctgcgcacagcggcccaggacgccctccggctgggcctcctgtcccaggagcagtgc
agccgctaccaccgctcagtcatggcatgggaaatggagcgcggcgtgctgggccccgcg
ggcgagcaaggcgccaccgttttcctgcgggaggtccaggacctgcagcgccacatcctg
gacgactgtgccctgtggctggtggaccggctggcggacggctgcctggacacagatgca
cagcgcctgctgggcgacctcaagggcaggctgaccgacacgcgccccgaggccctcaag
gcccaccagctgccctggagccgcgacctggtgaacccgaagaacaaggcccacgggcgc
tacctgaaggagctgggggagcagtttgtggccagggccaaccaccaggtgctggagagg
ctgcgggagcaggaggcggcggccaggcctgagccctcgtggcttttcaccgagatccgc
caccacctggccctgggcgcccaggccacccgcgtcttctgcggccgccaggacctactg
gcgctgctgggccagtggctgcggcagaaccacgacggcccgcacccgccgctgctgctc
tgggggcccccgggcgtgggcaagacggcgctgctgtgccgcctggccgagcagatgccc
gcgctgctgggccggaagacggtgacggtgctgcggctgctgggcgccagcgggatgagc
acggacgccggcgggctgctgcgcgggctctgctgccaggtgtgtctggcctacgggctc
ccgccgccgcccggccaggtgctggcggcccgcgcgcgcctcgtgcccttcttccacacg
ctcctgcacaccgtgtccagccgccacttcgagtccctcgtcatcctgctggactcgctg
gatgacgtggacggcgggcgctggggccggcgggtgctctggctgcccactcagtgcccc
ccgcgcgtccacctcatcctctcggcctgctccgggccgcggggggctctggatgccgcg
cgccgcgcgctcccgacggctgccgagtgggaggtgccgccgctgcccgcgggccaggcg
caggagctggtgcagcggctgctggcggctgctcggcgctcactgagccccgggcagcga
gacctactgtgggccagcctgcccgaatgcggccaccccgggcggctgcagctggccttc
gaggaggcacgccggtgggcctcgttcaccgtgcccgcacccctggctgccacagccgag
gaggccacacaccagctgtgtgcgcgcctggaacagacccatggacggctgctggtggcc
agtgtgctgggctacctcgcagcttcccggcacgggctgtctgaggcggaactgaaggac
atcttgtccctggatgatgaggtgctgcaggccgtgtaccgggactggacaccacccagc
cgggagctgctgcgcttccccccgctgctgtgggtgaggctgcggcgggacctgggccac
tgcctggcacagcggcccgtggatggcttcacgctcctgggcatcgcccagaggcagttg
gctgaggtggtccaagcacgctacctgtcgggacccgaggccgccaagaggcatggggta
ctggccgacttcttctcgggagcgtggagtcagggcaccaagaagctcatcacgctgccg
ctggtggggaagcccctcaacctggaccgcaaggtggccgcgcaaccgctgtggttctcg
gactcggtggccaacgtgcggaagttgcaggagctgccgctgcacctgctgcgtgccggc
cgcgtccaggagctgaagcaggaggttctgggcagcatgaactggatttcctgcaggggc
gtctctggggggctggaggccctgctggatgactttgccttgtgcggcccccacgtggac
tgcgctgaggtggacctggtgcgtgaggccctccagctgtgccgccctgccgtggagctg
cgcggcttggacaagtgtctcctgtacacggagctcctggcccggctgctctacttctca
gccagtcaccccgcactggtggggccactgtgccagcaggctcagagctggttccggcaa
tgtccacaccccgtgctggtgccccttgccggcttcctccagccccctggaggacccctg
ctggccattctcactggctgtcataagggcatcagcgccatcgcgtggagtctagagaag
cagctgctgctggtgggcacccaggatggcacggtagccgtgtgggacacggaggagtgg
cagacagtccacgtcctaactggacacacaggcgaggtgaaaggcttggaggtgctggcc
cagggcacgctcgtcatctccgcatccagggaccacacgctccgcctctgggacctgcag
gcggggcaggagaagttcaccatctgggacggaggctcccaggagccctctgagccgcag
tcctggagcctgcatgtggacgggcctgggaaggtgctgtactcagtgtccagctacaag
gtcaatgcctggcacctggagacggctgagctggtcttccgcattctgggggatgctggg
gacccctggatgtgcgcggccatcctgcccgcccaggccgtgctgctgaccgtgtctgcg
ggctgcatggtcagcctgtggagctcggtcactgggaagcggcagggcaagcggccaatg
accagcatcacggacgaggtgcccacatgtggggttccagtgcagaaacgggggacaatg
gtcgtcgggttcagccaaggtgccctgtgcctggtctcctctgaggaggacaggctgctg
gacacgctctcagcagcagtggggctcctggtggcttctgaggatgactcccttctcgct
gcagggtttggaaagtctgtgcgtgtcttcctggcggactcccagggcttccaccggttc
atggccagtgacctggagcacgaggacacggtcagcgcagctgcctttgggctccagaac
aacctgctggtcacggggtcccaggacacactcattcaggtgtggagcctgtccgagcag
ggtgctctgctggcggtactggagggtgtcggggcccccgtgagcctgctggccgcaggc
gggacactggtggcctccgcgtcacagcagtcctcatccctgaaagtgtgggacctcagc
cgcacacagcagcaggggccctgcgtgccattcccggacaggacagggcttacggccgtg
tcccacaacggggccttcgtctatttccccaaaatcggggacaggaacaaggtgtccatc
tgggacctggcggaaggccaggagcaggacgccgtggacacgtccaacgaggtgtgctgc
ctggaagtggcagagcaggcgcagctgctgctggcggggctggtgtcgggcgtggtgctg
gtgttcccgctgcgctcacgccaggacgtgttgtgcatccccccgcccgaggcccggcgc
gccgtgcgctgcgtggccctgagcaaggacgagcggcgcctggccgtcgcctacgaccac
acggtcctggtgctggacgtgagtccgggcgagccctgcccggtcattgacggccccatc
tacaccttctacacgcagctgcccgagacgctggcccgcgcggccgtcttggcagactgc
cgcgtgctctatggcatgagtgacggcagcctgtacgtgtacgagtgcgcgggcgccagg
gtgtcccaactcgaggcgcacgccggccgtgtcacctgcctggaggtcagccaccgggag
cagctggcggtcagcgggtcggaggagtcgcggctgtgtctgtgggacctgcaggcctgc
aagtggaagctggagctcagttacacgagctccttctgcaggggcgtgcagtgcgcctgc
ttctcccgggatgacaagcacgtgttcgccggcctcaaggaccgctcggtgatcgtctgg
agcgtgcaggacggcaccctgctggccgtgcagttcgtccatgcggtggtgaaccgcatt
atccccacttccaacggctttgtggcacccacccgccacggccacctcatccgccagcgc
ttccagtgccctgcggcccgtgtctcgcagcaggacccgctcaagaacttcaagaaggcc
gtgtggatggtcaagtgcaggcagcgggaggagctggccgccggcgaggaggccccacag
gacgcggagggcctccgggaggatgaagccaagtgccaccgccgctcacaggtgtgcctg
ctgctgtga
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