Sorex fumeus (smoky shrew): 130028936
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Entry
130028936 CDS
T10594
Symbol
COLGALT1
Name
(RefSeq) procollagen galactosyltransferase 1
KO
K11703
collagen beta-1,O-galactosyltransferase [EC:
2.4.1.50
]
Organism
sfum Sorex fumeus (smoky shrew)
Pathway
sfum00310
Lysine degradation
sfum00514
Other types of O-glycan biosynthesis
sfum01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
sfum00001
]
09100 Metabolism
09105 Amino acid metabolism
00310 Lysine degradation
130028936 (COLGALT1)
09107 Glycan biosynthesis and metabolism
00514 Other types of O-glycan biosynthesis
130028936 (COLGALT1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01003 Glycosyltransferases [BR:
sfum01003
]
130028936 (COLGALT1)
Enzymes [BR:
sfum01000
]
2. Transferases
2.4 Glycosyltransferases
2.4.1 Hexosyltransferases
2.4.1.50 procollagen galactosyltransferase
130028936 (COLGALT1)
Glycosyltransferases [BR:
sfum01003
]
O-Glycan biosynthesis
O-linked Gal type
130028936 (COLGALT1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Glyco_transf_25
Glyco_tranf_2_4
Anp1
Motif
Other DBs
NCBI-GeneID:
130028936
NCBI-ProteinID:
XP_055975760
LinkDB
All DBs
Position
Unknown
AA seq
626 aa
AA seq
DB search
MAAAPRACGRRGWPLPALQQLLLLLLLLPPPPGSPPGAAAYFPEERWSPESPLQAPRVLI
ALLARNAAHALPAALGALERLRHPRARTALWVATDHNSDNTTAVLREWLVAVKSLYHSVE
WRPAEEPQSYPDEEGPKHWSDARYEHVMKLRQAALKAAREMWADYILFVDADNLLLNPDT
LTLLMAENKTVVAPMLDSRAAYSNFWCGMTSQGYYKRTPAYIPIRKRERRGCFAVPMVHS
TFLIDLRKAASQHLAFYPPHPDYTWSFDDIIVFAFSCKQAEVQMYVCNKEVYGFLPVPLR
AHSTLQDEAESFIHTQLEVMVKHPPVEPSRFISVPSVPADKMGFDEVFMINLKRRVDRRE
RMLQALRDQGIQCRLVEAVDGKAMNTSQVEALGIQMLPGYRDPYHGRPLTKGELGCFLSH
YSIWKEVVDRGLRTVLVFEDDLRFEIFFKRRLMNLMRDVERESLDWDLIYVGRKRMQVEH
PEKAVRRVRNLVEADYSYWTLAYVLSEQGARKLLAARPLARMLPVDEFLPVMFDKHPVAE
YKSHFSPRDLRAFSVEPLLVYPTHYTGDDGYVSDTETSVVWNDEHVKTDWDRAKSQKMRE
QQALSRQAENSDVLQSPLDSAARDEL
NT seq
1881 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggccccacgcgcctgcgggcggcgcgggtggccgctcccggcgctgcagcag
ctactgctgttgctgctgctgctgccaccgccgccgggcagccctccgggcgccgccgcc
tacttcccggaggagcgctggagccccgagtcgcccctgcaggcgccgcgcgtgctcatc
gcactgctggccaggaacgcggcccacgcgctgcccgccgcgctcggggccctggagcgg
ctccggcacccgcgggcgcgcacagcgctgtgggtcgccacggaccacaactcggacaac
accacggcggtgctcagggagtggctggtggccgtgaagagtctctaccactcggtggag
tggcggccggccgaggagccccagtcctacccggatgaggaaggcccgaagcactggtcg
gacgcccgctatgagcatgtgatgaagctgcgtcaggcggctctgaaggctgcacgcgag
atgtgggccgactacatcctgtttgtggacgcagacaacctgctgctcaaccccgacacg
ctcaccctgctcatggctgagaacaagacggtggtggcgcccatgctggactcccgtgcc
gcctactccaacttctggtgtggcatgacgtcccagggctactacaagcgcacccccgcc
tacatccccatccggaagcgcgagcgccgcggctgcttcgcggtccccatggtgcactcg
accttcctcatcgacctgcgcaaggcggcatctcagcacctggctttctacccgccgcac
cctgactacacctggtccttcgacgacatcatcgtcttcgccttctcctgcaagcaggcc
gaggtgcagatgtacgtgtgcaacaaggaggtgtatggcttcctgcctgtgcccctgcgt
gcccacagcactctccaggatgaggctgagagcttcatacacacacagctggaggtcatg
gtgaagcacccgccagtggagccgtcccggttcatctcagtgcccagcgtgccggccgac
aagatgggctttgatgaggtcttcatgatcaacctgaagcggcgcgtggaccggcgggag
aggatgctgcaggccctgcgggaccagggcatccagtgccggctggtggaggccgtggac
ggcaaagccatgaacaccagccaggtggaggctctgggcattcagatgctgcctggctat
cgggacccctaccacgggcggccgctgaccaagggcgagctgggctgtttcctgagccac
tacagcatctggaaggaggtggtggacaggggcctgcggacggtgttggtgttcgaggac
gatcttcgctttgagattttcttcaagcgccgcctcatgaacctcatgcgggacgtggag
cgggagtcgctggactgggacctcatctacgtgggccgcaagcggatgcaggtggagcac
ccggagaaggcggtgcggcgcgtgcgcaacctggtggaggccgactactcgtactggacg
ctggcctacgtcctctcggagcagggcgcccgcaagctgctggctgcccggccgctggcc
cgcatgctgcccgtggacgagttcctgcccgtcatgttcgataagcacccagtggccgag
tacaagagccacttctcgccacgcgacctgcgcgccttctccgtggagccgctgctcgtc
taccccacgcactacacgggcgacgacggctacgtgagcgacaccgagacctcggttgtg
tggaacgacgagcacgtgaagaccgactgggaccgcgccaagtcgcagaagatgcgggag
cagcaggcgctcagccgccaggccgagaactcggacgtgctccagtccccgcttgacagc
gctgcccgcgacgagctctga
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