Sorex fumeus (smoky shrew): 130029337
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Entry
130029337 CDS
T10594
Symbol
SCN8A
Name
(RefSeq) sodium channel protein type 8 subunit alpha
KO
K04840
voltage-gated sodium channel type VIII alpha
Organism
sfum Sorex fumeus (smoky shrew)
Pathway
sfum04517
IgSF CAM signaling
Brite
KEGG Orthology (KO) [BR:
sfum00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
130029337 (SCN8A)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
sfum04040
]
130029337 (SCN8A)
Ion channels [BR:
sfum04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
130029337 (SCN8A)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
Na_trans_cytopl
IQ_SCN5A_C
PKD_channel
IQ
ATP-synt_B
GPHH
Lustrin_cystein
HB_ELP1
Motif
Other DBs
NCBI-GeneID:
130029337
NCBI-ProteinID:
XP_055976251
LinkDB
All DBs
Position
Unknown
AA seq
1980 aa
AA seq
DB search
MAARLLAPPGPDSFKPFTPESLANIERRIAESKIKKPPKADGSHREDDEDSKPKPNSDLE
AGKSLPFIYGDIPQGLVAVPLEDFDPYYLTQKTFVVLNRGKTLFRFSATPALYILSPFNL
IRRIAIKILIHSVFSMIIMCTILTNCVFMTFSNPPEWSKNVEYTFTGIYTFESLVKIIAR
GFCIDGFTFLRDPWNWLDFSVIMMAYVTEFVDLGNVSALRTFRVLRALKTISVIPGLKTI
VGALIQSVKKLSDVMILTVFCLSVFALIGLQLFMGNLRNKCVVWPINFNESYLENGTKGF
DWDEYINNKTNFYTVPGMLEPLLCGNSSDAGHCPEGYQCMKAGRNPNYGYTSFDTFSWAF
LALFRLMTQDYWENLYQLTLRAAGKTYMIFFVLVIFVGSFYLVNLILAVVAMAYEEQNQA
TLEEAEQKEAEFKAMLEQLKKQQEEAQAAAMATSAGTVSEDAIEEEGEDGVGSPRSSSEL
SKLSSKSAKERRNRRKKKKQKELSEGEEKGDPEKVFKSESEDGMRRKGFRLPDNRIGRKF
SIMNQSLLSIPGSPFLSRHNSRSSIFSFRGPGRFRDPGSENEFADDEHSTVEESEGRRDS
LFLPARARERRSSYSGYSGYSQGSRSSRIFPSLRRSVKRNSTVDCNGVVSLIGGPGAHIG
GRLLPETTTEVEIKKKGPGSLLVSMDQLASYGRKDRINSILSVVTNTLVEELEESQRKCP
PCWYKFANTFLIWECHPYWIKLKEIVNLIVMDPFVDLAITICIVLNTLFMAMEHHPMTPQ
FEHVLAVGNLVFTGIFTAEMFLKLIAMDPYYYFQEGWNIFDGFIVSLSLMELGLADVEGL
SVLRSFRLLRVFKLAKSWPTLNMLIKIIGNSVGALGNLTLVLAIIVFIFAVVGMQLFGKS
YKECVCKINQDCVLPRWHMNDFFHSFLIVFRVLCGEWIETMWDCMEVAGQAMCLIVFMMV
MVIGNLVVLNLFLALLLSSFSADNLAATDDDGEMNNLQISVIRIKKGVAWIKLKVRAFMQ
AHFKQREADEVKPLDELYEKKANCIANHTGADIHRNGDFQKNGNGTTSGIGSSVEKYIID
EDHMSFINNPNLTVRVPIAVGESDFENVNTEDVTSESDPDGSKDKLDDTSSSEGSTIDIK
PEVEEVPVEQPEEYLDPDACFTEGCVQRFKCCQVNIEEGLGKSWWILRKTCFLIVEHNWF
ETFIIFMILLSSGALAFEDIYIEQRKTIRTILEYADKVFTYIFILEMLLKWTAYGFVKFF
TNAWCWLDFLIVAVSLVSLIANALGYSELGAIKSLRTLRALRPLRALSRFEGMRVVVNAL
VGAIPSIMNVLLVCLIFWLIFSIMGVNLFAGKYHYCFNETSEIRFEIEDVNNKTDCEKLM
EENSTEIRWKNVKINFDNVGAGYLALLQVATFKGWMDIMYAAVDSRKPDEQPKYEDNIYM
YIYFVIFIIFGSFFTLNLFIGVIIDNFNQQKKKFGGQDIFMTEEQKKYYNAMKKLGSKKP
QKPIPRPLNKIQGIVFDFVTQQAFDIVIMMLICLNMVTMMVETDTQSKQMENILYWINFV
FVIFFTCECVLKMFALRHYYFTIGWNIFDFVVVILSIVGMFLADLIEKYFVSPTLFRVIR
LARIGRILRLIKGAKGIRTLLFALMMSLPALFNIGLLLFLVMFIFSIFGMSNFAYVKHEA
GIDDMFNFETFGNSMICLFQITTSAGWDGLLLPILNRPPDCSLDKEHPGSGFKGDCGNPS
VGIFFFVSYIIISFLIVVNMYIAIILENFSVATEESADPLSEDDFETFYEIWEKFDPDAT
QFIEYCKLADFADALEHPLRVPKPNTIELIAMDLPMVSGDRIHCLDILFAFTKRVLGDSG
ELDILRQQMEERFVASNPSKVSYEPITTTLRRKQEEVSAVVLQRAYRGHLARRGFICKKI
TSKKLENGGTHREKKESTPSTASLPSYDSVTKPEKEKQQRAEEGKRERAKRQKEVRESKC
NT seq
5943 nt
NT seq
+upstream
nt +downstream
nt
atggcagcgcggctgctcgcaccgccaggccctgatagtttcaagcctttcacccccgag
tcactggccaacatcgagaggcgcatcgctgagagcaagatcaagaagcccccgaaggcc
gacggcagccatcgcgaagacgatgaggacagcaagcccaagccgaacagtgacttggag
gcagggaagagtttgcctttcatctacggggacatcccacaaggcctggttgcggttccc
ctggaggactttgacccgtactatttgacgcagaaaacctttgtagtattaaacagaggg
aaaacactcttcagatttagtgccacgcctgccttgtacattttaagtccttttaacctg
ataagaagaatagctattaaaattttgatacattcagtatttagcatgatcatcatgtgc
actattttgaccaactgtgtattcatgacttttagtaaccctcctgagtggtcgaagaat
gtggagtacacattcacagggatttatacatttgaatcactagtgaaaatcattgcaaga
ggcttctgcatagatggcttcaccttcttacgggatccatggaactggctagatttcagt
gtcatcatgatggcatatgtgacagagtttgtggacctggggaatgtctcagcgctgaga
acattcagggttctccgagctttgaaaactatctctgtaattccaggcctgaagaccatt
gtgggggccctgatccagtcggtgaagaagctgtcggacgtgatgatcctgacggtgttc
tgcctgagtgtctttgccttgatcgggctgcagctctttatgggcaatctgcggaacaag
tgtgtggtgtggcccataaacttcaatgagagctatctggaaaacggcaccaaaggcttt
gattgggacgagtatatcaacaataaaacgaatttttacacggttcctggcatgctggaa
cctttactttgtggaaacagctctgatgctgggcactgcccagagggataccagtgtatg
aaagcagggaggaaccccaactatgggtacacgagctttgacactttcagctgggctttc
ttggcactgttccgccttatgacccaggactattgggagaacttgtatcagttgactttg
cgggcagctgggaaaacatacatgatcttctttgtcttggtcatcttcgtgggctctttc
tatctggtgaacttgatcttggctgtggtggccatggcctatgaagagcagaatcaggca
accctggaggaggcagagcagaaggaagctgagttcaaagccatgttggagcaactgaag
aagcaacaagaagaggcacaggcagcggccatggccacctccgcaggaaccgtctcggaa
gatgccatcgaggaagaaggtgaagatggggttggctctcctcggagctcctccgagctt
tccaaactcagctccaagagtgccaaggaaagacgcaaccggaggaaaaagaagaagcaa
aaggaactctctgaaggggaggagaagggcgatcccgagaaggtgttcaagtctgagtcg
gaggatggcatgaggaggaaaggctttcgcctcccggacaacaggataggaaggaagttt
tccatcatgaaccagtccctgctgagcatcccgggctccccgttcctgtcccgccacaac
agccggagcagcatcttcagcttccgcgggccgggccggttccgggacccgggctcggag
aacgagttcgccgacgacgagcacagcacggtggaggagagcgagggccgccgcgactcg
ctcttcctcccggcccgcgcccgcgagcgccgcagcagctacagcggctacagcggctac
agccagggcagccgctcctcgcgcatcttccccagcctgcgccgcagcgtcaagcgcaac
agcaccgtggactgcaacggcgtcgtgtcgctcatcggaggccccggcgcgcacatcggc
gggcggctcctgccagagaccaccactgaagtggaaattaagaagaaaggccctggatct
ctcctcgtatccatggaccagctggcctcctatgggcggaaggacaggatcaacagtata
ttaagcgttgttacaaatactctagtagaagagctggaagagtcccagagaaagtgtcca
ccgtgctggtataaatttgccaacactttcctcatctgggagtgtcacccctactggata
aaactgaaagagatcgtgaacttgattgttatggatccgttcgtggacttggccatcacc
atctgcatcgtcctcaacaccctgttcatggcgatggagcaccatcctatgacaccacag
ttcgaacatgtcttggctgtgggaaatctggttttcactggaattttcacagcagaaatg
tttttgaagctcatagccatggatccctactattatttccaagaaggttggaacattttt
gacggatttatagtctccctcagtttaatggaactgggtctagcagacgtggaggggctc
tcggtgctgcgatctttccgattgctccgagtcttcaaattggcaaaatcctggcctacc
ctgaacatgctgatcaagattatcggaaactcagtgggtgccctgggcaacctcaccctg
gtgctggccatcatcgtcttcatctttgccgtggtggggatgcagcttttcggcaagagc
tacaaggagtgcgtctgcaagatcaaccaggactgcgtgcttccgcgctggcacatgaat
gactttttccattccttcctcattgtcttccgagtgttgtgcggggagtggatcgagacc
atgtgggactgcatggaggtcgccggccaggccatgtgcctcattgtcttcatgatggtc
atggtcattggcaacttggtggtcctgaacctatttctggccttgcttctgagctccttc
agtgcagacaacctggcagccacagacgatgatggggagatgaacaacctgcagatttca
gtgatccgtatcaagaagggtgtagcttggatcaagctgaaagtgcgtgccttcatgcag
gcccacttcaagcagcgcgaagccgatgaagtgaagcctttggatgaactctatgagaag
aaagccaactgcattgccaaccacactggcgcagacatccaccgaaatggggatttccag
aagaatggcaacggcaccaccagcggcattggtagcagcgtggagaagtacatcattgac
gaggaccatatgtccttcatcaataatcccaatctgactgtgcgggtgcccattgccgtc
ggcgagtctgactttgagaatgtcaacactgaagatgttaccagcgaatcagatcctgac
ggcagcaaagataaactagatgatactagctcctctgaagggagtaccatcgatatcaaa
ccagaagtcgaggaagtccccgtggagcagcccgaggagtacttggacccagatgcctgc
ttcaccgaaggttgtgtccagcggttcaaatgctgccaggtcaacattgaagaaggtcta
ggcaagtcctggtggatcttgcggaaaacctgcttcctcatcgtagaacacaattggttc
gagaccttcatcatcttcatgattcttctcagcagcggtgccctggccttcgaggacatc
tacatcgagcagagaaagaccatccgaaccatcctggagtacgctgacaaggtcttcacc
tacatcttcatcctggagatgctactcaagtggacggcctatggcttcgtcaagttcttc
accaatgcctggtgctggctggacttcctcattgtcgctgtctctttagtcagccttata
gctaatgccctgggctactcggaactaggtgccataaagtcccttaggaccctaagagct
ttgagacccttaagagccttatcacgatttgaagggatgagggtggtggtgaatgccttg
gtgggcgctatcccctccatcatgaatgtgctgctggtgtgtctcatcttctggctgatt
ttcagcatcatgggagttaacctgtttgcgggaaagtaccactactgctttaacgagact
tctgaaatccggtttgagattgaggatgtcaacaataaaactgactgtgaaaagctcatg
gaagagaacagcacagaaatcagatggaagaacgtgaagatcaacttcgacaacgttggg
gccggatacctggcactgctccaagtggcaaccttcaaaggctggatggacatcatgtac
gcagcagtcgactcccgcaagcctgatgagcagcccaagtatgaggacaacatctacatg
tacatctactttgtcatcttcatcatcttcggctccttcttcaccctgaacttgttcatt
ggtgtcatcattgataacttcaatcaacaaaagaaaaagtttggaggtcaagacatcttc
atgactgaagaacagaagaagtactacaatgccatgaaaaagctgggctcaaagaaacca
cagaaacccattccccgccctttgaacaaaatccaaggcatcgtctttgattttgtcacc
caacaagccttcgacattgtcatcatgatgctcatctgccttaacatggtgacgatgatg
gtggagacggacactcagagcaagcagatggagaacatcctttactggatcaacttcgtc
ttcgtcatcttcttcacctgcgagtgcgtgctcaagatgttcgccttgaggcactactac
ttcaccattggctggaacatcttcgacttcgtggtcgtcatcctctccattgtgggaatg
ttcctggctgatctgattgagaaatactttgtttccccaaccctgttccgcgtcatccga
ttggcccgaatcgggcgcatcctgcgtctgatcaaaggtgccaaagggattcgtaccctg
ctctttgccttaatgatgtccttgcctgctcttttcaacatcggccttctgctcttcctg
gtcatgttcatcttctccatcttcggcatgtccaacttcgcgtacgtgaagcacgaggcc
ggcatcgacgacatgttcaacttcgagacgttcggcaacagcatgatctgcctcttccag
atcaccacctcggcgggctgggacggcctgctgctgcccatcctcaaccggccccctgac
tgcagtctggataaggagcacccggggagtggctttaagggggactgcgggaacccctcg
gtgggcatcttcttcttcgtgagctacatcatcatctccttcctgattgtggtgaacatg
tacatcgccatcatcctggagaacttcagcgtggccacagaggagagcgcagatcctctg
agtgaggacgactttgagaccttctacgagatctgggagaagtttgaccccgacgccacg
cagttcatcgagtattgcaagctggccgacttcgctgatgccttggaacatcctctccga
gtgcccaaacccaacaccatcgagctcattgccatggacctaccaatggtcagcggcgac
cgcatccactgcttggacatcctttttgccttcaccaagcgggtcctgggagacagtggg
gagttggacatccttcggcagcagatggaggagcggttcgtggcatccaacccttccaaa
gtgtcttacgagccaatcacgaccacgttgcggcgcaagcaggaagaagtgtctgccgtg
gtcctgcagcgcgcctaccggggacacttggcacggcggggcttcatttgcaaaaagatc
acttccaagaagctcgagaacggaggcacacaccgggagaagaaagagagcacgccctcc
accgcctccctgccctcctacgacagcgtgacgaagcccgagaaggagaagcagcagcgg
gcggaggagggcaagagggagcgagccaagcgacagaaagaggtgagagagtccaagtgt
tag
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