Sorex fumeus (smoky shrew): 130029472
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Entry
130029472 CDS
T10594
Symbol
TAF5
Name
(RefSeq) transcription initiation factor TFIID subunit 5 isoform X1
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
sfum Sorex fumeus (smoky shrew)
Pathway
sfum03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
sfum00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
130029472 (TAF5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sfum03021
]
130029472 (TAF5)
03036 Chromosome and associated proteins [BR:
sfum03036
]
130029472 (TAF5)
Transcription machinery [BR:
sfum03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
130029472 (TAF5)
Coactivators
SAGA/TFTC/STAGA complex
130029472 (TAF5)
Chromosome and associated proteins [BR:
sfum03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
130029472 (TAF5)
STAGA complex
130029472 (TAF5)
TFTC complex
130029472 (TAF5)
SAGA complex
130029472 (TAF5)
SLIK complex
130029472 (TAF5)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40
WD40_Prp19
TFIID_NTD2
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
EIF3I
Beta-prop_EML_2
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
WDR55
NBCH_WD40
WD40_MABP1-WDR62_1st
Beta-prop_WDR75_1st
ANAPC4_WD40
Beta-prop_TEP1_C
Beta-prop_IFT122_1st
Beta-prop_SCAP
WDR90_beta-prop_4th
Beta-prop_RIG_2nd
Beta-prop_IFT140_1st
Beta-prop_Vps41
Beta-prop_EIPR1
Beta-prop_DCAF4
WD40_RFWD3
Beta-prop_HPS5
Beta-prop_WDR19_1st
Beta-prop_SPT8
WD_LRWD1
Beta-prop_DCAF12
Beta-prop_Nup120_160
PEP5_VPS11_N
RAB3GAP2_N
CDK5RAP3
Beta-prop_RIG_1st
eIF2A
Cytochrom_D1
VPS8_N
ABM-like
PROPPIN
Motif
Other DBs
NCBI-GeneID:
130029472
NCBI-ProteinID:
XP_055976350
LinkDB
All DBs
Position
Unknown
AA seq
803 aa
AA seq
DB search
MAALAEEQTEVAVKLESEAPPTLLPPQAGDGAGEGGGGPANHGPNGGGGGGSVAAASSAG
GDGGTPKPAVAVSAAAPAGAAPVPAAAADAGAPQDRQTLLAVLQFLRQSNLREAEEALRR
EARLLEEAAAAGSGAPGEADGASAEAASALLSRVTAAVPGAAAPEPPAAGGAGAPAGSGP
AAGAAAPGRVGSVAVEDQPDVSAVLSAYNQQGDPTMYEEYYSGLKHFIECSLDCHRAELS
QLFYPLFVHMYLELVYNQHENEAKSFFEKFHGDQECYYQDDLRVLSSLTKKEHMKGNETM
LDFRTSKFVLRISRDSYQLLKRHLQEKQNNQIWNIVQEHLYIDIFDGMPRSKQQIDAMVG
SLAGEAKREANKSKVFFGLLKEPEIEVPLDDEDEEGENEEGKPKKKKPKKDSIGSKSKKQ
DPNAPPQNRIPLPELKDSDKLDKIMNMKETTKRVRLGPDCLPSICFYTFLNAYQGLTAVD
VTDDSSLIAGGFADSTVRVWSVTPKKLRSVKQAADLSLIDKESDDVLERIMDEKTASELK
ILYGHSGPVYGASFSPDRNYLLSSSEDGTVRLWSLQTFTCLVGYKGHNYPVWDTQFSPYG
YYFVSGGHDRVARLWATDHYQPLRIFAGHLADVNCTRFHPNSNYVATGSADRTVRLWDVL
NGNCVRIFTGHKGPIHSLTFSPNGRFLATGATDGRVLLWDIGHGLMVGELKGHTDTVCSL
RFSRDGEILASGSMDNTVRLWDAVKAFEDLETDDFTTATGHINLPENSQELLLGTYMTKS
TPVVHLHFTRRNLVLAAGAYSPQ
NT seq
2412 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgctggcggaggagcagacggaggtggcggtcaagttagagtctgaggcaccg
ccgacgctgctccctccacaggcgggggacggggccggcgagggcggcggcggccctgcc
aaccacggcccgaacggcggcggcggcggcgggagcgtggcggcggcctcgtcggccggt
ggggatggcgggacccccaagcccgccgtggctgtctccgccgcggctccggcgggggcg
gccccggtgccggcggccgcggcggacgccggcgcgccgcaagaccgacagaccctgctg
gccgtgctgcagttcctccggcagagcaacctccgcgaagccgaagaggcgctgcggcgc
gaggcccggctgctggaggaggcggcggcggcgggctccggagccccgggagaggcggac
ggcgccagcgccgaggcggccagcgcgctcctcagccgggtcacggccgccgtccccggc
gcggcggcgcccgagcctccggccgcgggcggcgcgggagcccccgccgggtcgggcccc
gccgcgggcgccgcggctccgggcagagttggaagtgtagctgtggaagaccagcccgat
gtcagtgctgtgctatcagcctataaccaacaaggagaccccacaatgtatgaagaatac
tatagtggactgaagcacttcattgaatgttccttggactgccatcgggcagaattatcc
caactcttctatcctctatttgtacacatgtacttggaactagtctacaatcaacatgag
aatgaagcaaaatcattctttgagaagttccatggagatcaggaatgttattaccaggat
gacctacgagtattatctagtcttaccaaaaaggaacacatgaaagggaatgagaccatg
ttggattttcgaacaagtaaatttgttctccgtatttcccgtgactcgtaccaactcttg
aagaggcaccttcaggagaaacagaacaatcagatttggaacatagttcaggagcacctc
tacatcgacatctttgacgggatgccgcgtagtaagcagcagatcgatgccatggtggga
agtttggcaggagaggctaaacgagaggcaaacaaatccaaggtattttttggtttatta
aaagagccagaaattgaagtacctttggatgatgaggatgaggaaggagaaaatgaagaa
ggaaaacctaaaaagaagaagcccaaaaaagatagtattggatccaaaagtaaaaaacaa
gatcccaacgctccacctcaaaacagaatccctcttccagagttaaaagattcagataag
ttggataagataatgaatatgaaagaaactaccaaacgagtgcgccttgggcctgactgt
ttaccctccatttgtttttatacattcctcaatgcttaccagggacttaccgcagtagat
gtcactgatgattctagtttgattgctggaggttttgcagattcaactgtccgagtgtgg
tctgtgacacccaagaagcttcgtagtgtcaaacaagcagcagatcttagtctcatagac
aaagaatcagatgatgtcttagaaagaattatggacgaaaaaacagcaagtgagttgaag
attttgtatggtcacagtggacctgtctatggagccagcttcagtccggatagaaactac
ctgctttcctcttcagaggatggaactgttagattgtggagtcttcagacgtttacgtgt
ttggtgggctataaaggacacaactatcctgtgtgggacacgcagttttctccgtatgga
tattactttgtatcagggggccatgaccgagtagctcggctttgggctacagaccactat
cagcctttaaggatatttgctggccatcttgctgatgtgaattgtaccagattccatccg
aattctaattatgttgccacggggtctgcggacagaactgtgcggctctgggatgtcctg
aatgggaactgtgtaaggattttcactggacacaagggaccaattcattccttgacgttt
tctcccaatgggagattcctggctacaggagcaacagatggcagagtactcctttgggat
atcggacatggcttgatggttggagaattaaaaggccacactgatacagtctgttcactt
aggtttagtagagatggcgaaattttggcatcaggttcaatggataacacagtccggtta
tgggatgccgtcaaagcatttgaagatttagagactgatgattttactacagccactggg
catataaatttacctgagaattcacaggaattactattggggacatatatgaccaaatca
acaccagttgtacacctccattttactcgaagaaacttggttctagctgcaggagcttat
agtccacaataa
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integrated database retrieval system
