Sorex fumeus (smoky shrew): 130029906
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Entry
130029906 CDS
T10594
Symbol
NFKB2
Name
(RefSeq) nuclear factor NF-kappa-B p100 subunit isoform X1
KO
K04469
nuclear factor of kappa light polypeptide gene enhancer in B-cells 2
Organism
sfum Sorex fumeus (smoky shrew)
Pathway
sfum04010
MAPK signaling pathway
sfum04064
NF-kappa B signaling pathway
sfum04380
Osteoclast differentiation
sfum04625
C-type lectin receptor signaling pathway
sfum05134
Legionellosis
sfum05166
Human T-cell leukemia virus 1 infection
sfum05169
Epstein-Barr virus infection
sfum05200
Pathways in cancer
sfum05203
Viral carcinogenesis
sfum05224
Breast cancer
Brite
KEGG Orthology (KO) [BR:
sfum00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
130029906 (NFKB2)
04064 NF-kappa B signaling pathway
130029906 (NFKB2)
09150 Organismal Systems
09151 Immune system
04625 C-type lectin receptor signaling pathway
130029906 (NFKB2)
09158 Development and regeneration
04380 Osteoclast differentiation
130029906 (NFKB2)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
130029906 (NFKB2)
05203 Viral carcinogenesis
130029906 (NFKB2)
09162 Cancer: specific types
05224 Breast cancer
130029906 (NFKB2)
09172 Infectious disease: viral
05166 Human T-cell leukemia virus 1 infection
130029906 (NFKB2)
05169 Epstein-Barr virus infection
130029906 (NFKB2)
09171 Infectious disease: bacterial
05134 Legionellosis
130029906 (NFKB2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sfum03000
]
130029906 (NFKB2)
Transcription factors [BR:
sfum03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
RHR (Rel homology region) Rel/Ankyrin
130029906 (NFKB2)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RHD_DNA_bind
RHD_dimer
Ank_2
Ank
Ank_3
Ank_5
Ank_4
Death
Motif
Other DBs
NCBI-GeneID:
130029906
NCBI-ProteinID:
XP_055976977
LinkDB
All DBs
Position
Unknown
AA seq
899 aa
AA seq
DB search
MDSCYDPQGLDGIIKYEGFKFNPAIEEPKEPMPETADGPYLVIVEQPKQRGFRFRYGCEG
PSHGGLPGASSEKGRKTYPTVKICNYEGLAKIEVDLVTHSDPPRAHAHSLVGKQCSELGV
CVVSVGPKDMTAQFNNLGILHVTKKNMMDIMIQKLQRQRLRSTSLGLITEAERRELEQEA
KELKKVMDLSIVRLRFSAFLRASDGSFSLPLKPVISQPIHDSKSPGASNLKISRMDKTAG
SVRGGDEVYLLCDKVQKDDIEVRFYEDDENGWQAFGDFSPTDVHKQYAIVFRTPPYHKMK
IERPVTVFLQLKRKRGGDVSDSKQFTYYPLVEDKEEVQRKRRKTLPTFSQPFGGGSHMGG
GSGGSAGGFGGAGGGGGSLGFFSSLAYSPYQSGAAPMGCYPGGGGGAQMSAAPKTEDEDG
AAELSAPSETPQHEAPAPEQLRQAREYNARLFGLAQRSARALLDYGVTADARTLLAGQRH
LLTAQDEDGDTPLHLAIIHGQSNVIEQIIQVICHAQHLGVVNLTNHLHQTPLHLAVITGQ
AHVVSFLLQVGADPALLDRHGDSALHLALRAGACAPDLLRALLQSGLPSVLPLLHMPDFE
GLYPVHLAVRTRSPECLDLLAESGAQVEAAERQGGRTALHLATEMEELGLVTHLVTKLHA
DVNARTFAGNTALHLAAGLGSPTLTRLLLKAGANIHAENGEPLRLLPSPPSSESDSDSEG
DIPRGFRGHTALDLTRSTKVKTLLLHAAQGRLVPPVTPPSPAAPELPLEEPALQHLEQLL
DQPGTQGGWAELAERLGLRSLVDTYRKTASPSGSLLRSYKLAGGDLAGLLDALSDMGLEE
GVRLLRGPEAGDKLPSTVEMKEDSAYGSQSVEQEEAEKLGPPPEPPGGLCHGHPQPQVH
NT seq
2700 nt
NT seq
+upstream
nt +downstream
nt
atggacagttgctacgacccacagggcctcgatgggatcattaaatacgagggtttcaaa
ttcaacccggctattgaggagccgaaggagcccatgccagagacagctgatggcccatat
ctggtgattgtggagcagccgaagcaacgaggcttccgattccgatatggctgcgaaggc
ccctcccatggagggctgccaggtgcttccagcgagaagggccggaagacgtatcccaca
gtcaagatctgtaactacgagggactggccaagatcgaggtggacctggtaacacacagt
gacccgcctcgcgctcatgcccacagcctggtgggcaagcagtgctcggagctgggggtc
tgcgtcgtgtctgtggggcccaaggacatgactgcccagttcaacaacctgggcatcctg
catgtgaccaagaagaacatgatggatatcatgatacagaaacttcaacggcagcgcctc
cgctccacatccctgggacttattacagaggctgagcggcgggaactggagcaggaggcc
aaagagctgaagaaggtgatggatctgagcatcgttcggctccgcttctctgccttcctt
cgggccagcgatggctccttctccctgcccctgaagccagttatctcccagcccatccat
gacagcaaatcccccggagcctctaacttgaagatttctcgaatggacaagacagctggc
tctgtgcggggtggagatgaggtttatctgctttgtgacaaggtgcagaaagacgacatt
gaggttcgcttctatgaggacgatgagaatggctggcaggcctttggggacttctctccc
acagatgtccacaaacagtatgccatcgtgttccggacacctccctatcacaagatgaag
atcgagcgccccgtcaccgtgttcctgcaactgaagcgcaaacgtggaggcgacgtctcc
gactccaaacagttcacctactacccgctggtggaagacaaggaagaggtgcagcgcaag
cgccggaagaccttgcccaccttctcccagcccttcgggggcggatcccacatgggtgga
ggttctgggggctcagccggcggttttggaggagcaggaggaggagggggcagcctcggc
tttttctcctctttggcctacagcccctaccagtcgggcgcggcccccatgggctgctac
ccgggaggtgggggcggggcgcagatgtccgctgcgcccaaaacggaggacgaggacgga
gcagccgagctcagcgcgccctccgagaccccccagcacgaggcgccagccccggagcag
ctgcggcaagctcgcgagtacaacgcgcgcctgttcggcctggcgcagcgcagcgcccga
gccctgctcgactacggcgtcacggcggacgcacgcacgctgctggcgggacagcgccac
ctcctgacggcccaggacgaggacggagacacgccgctgcacctggccatcatccatggg
cagagcaacgtcatcgagcagataatccaggtcatctgccatgcgcagcaccttggcgtg
gtcaacctcaccaaccacctgcaccagacccccctgcacctggcggtgatcacagggcag
gcccacgtggtgagcttcctgctgcaggtgggcgccgacccggcgctgctggaccgccac
ggagactcggcgctgcacctggctctgcgggctggcgcctgcgcccccgacctgctacgc
gccctgctgcagagcgggctccccagcgtgctcccactgctgcacatgcccgacttcgag
gggctgtacccggtccacctggcagtgcgcacgcggagccccgagtgcctggacttgctg
gccgagagcggggctcaggtggaggctgcagagcggcagggcggtcggacggccctgcac
ctggccacggagatggaggagctgggcctggtcacccatctggtcaccaagctccatgcc
gatgtgaacgcccgcaccttcgcagggaacaccgccctccacctggccgccgggctgggg
tccccaactctcacgcgcctcctgctgaaggcgggtgccaacatccacgcagagaatggg
gagccactgcgcctgctgccctcgccccccagctccgagagtgactcagattcagagggg
gacatcccaagaggcttccggggtcacacagctcttgacctcactcgcagcaccaaggtg
aagaccctgctgctccacgctgctcagggcaggctggtgccccccgtgaccccgccgagc
cctgcagcaccagagcttcccctagaggaaccagccctgcagcacctggagcaactgctg
gaccagccgggcacacagggtggctgggcagagctggcggagcgcctggggctgcgcagt
ctagtggacacttaccggaagacggcgtccccgagtggcagcctcctgcgcagctacaag
ctggctggtggggatttggcggggctgctggacgccctgtccgacatgggcctggaggag
ggtgtcaggctgctgaggggcccggaagccggggacaagctgcccagcacagtggagatg
aaggaggacagcgcctacgggagccagtcggtggaacaggaggaggctgagaagctgggc
ccgccacccgagccgccaggcggactctgccacgggcacccccagccccaggtgcactga
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