Sorex fumeus (smoky shrew): 130030220
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Entry
130030220 CDS
T10594
Symbol
VPS16
Name
(RefSeq) vacuolar protein sorting-associated protein 16 homolog
KO
K20180
vacuolar protein sorting-associated protein 16
Organism
sfum Sorex fumeus (smoky shrew)
Pathway
sfum04140
Autophagy - animal
sfum04148
Efferocytosis
sfum05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
sfum00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
130030220 (VPS16)
04148 Efferocytosis
130030220 (VPS16)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
130030220 (VPS16)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sfum04131
]
130030220 (VPS16)
Membrane trafficking [BR:
sfum04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
130030220 (VPS16)
Hops complex
130030220 (VPS16)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Vps16_N
Vps16_C
Motif
Other DBs
NCBI-GeneID:
130030220
NCBI-ProteinID:
XP_055977426
LinkDB
All DBs
Position
Unknown
AA seq
839 aa
AA seq
DB search
MDCYTANWNPLGDSAFYRKYELYSMDWDLKDELRDCLVAAAPYGGPIALLRNPWRKEKSV
SIRPVLEIYSASGMPLANLLWKSGLVVSLGWSAEEELLCVQEDGVVLVYGLHGDFRRHFS
MGNEVLQNRVLDARIFHTEFGSGVAILTGAHRFTLSANVGDLKLRRMPEVPGLQSAPSCW
TTLFQERVVHVLLAVGPDLYLLDHAACSAVTLPGLPPGVSSFLQMAVSFTNRHLALFTDT
GCIWMGTASLKEKLCEFNCNIRAPPKQMVWCSRPRSKERAVVVAWERRLMVVGDAPESIQ
FVLDEDSYLVPELDGVRIFSRSTHEFLHEVPAASEEIFKIASMAPGALLLEAQKEYEKES
QKADEYLREIQELGQLSQAVQQCIEAAGHEHQPDMQKSLLRAASFGKCFLDRFPPDSFVR
MCQELRVLNAVRDYHIGIPLTYSQYKQLTIQVLLDRLVLRRLYPLAIQICEYLRLPEVQG
VSRILAHWACYKVQQKDVSDEDVARAINQKLGDTPGVSYSDIAARAYGCGRTELAIKLLE
YEPRSGEQVPLLLKMKRSKLALSKAIESGDTDLVFTVLLHLKNELNRGDFFMTLRNQPMA
LSLYRQFCKHQELETLKDLYNQDDNHQELGSFHIRASYTAEERIEGRVAALQTAADAFYK
AKNEFAAKATEDQMRLLRLQRRLEDELGGRFLNLSLHDTVTALILGGHSKRSEQLARDFR
IPDKRLWWLKLTALADLGDWEELEKFSKSKKSPIGYLPFVEVCMKQHNKYEAKKYASRVS
PEQKVKALLLVGDVSQAADVAIEHRNEAEMSLVLSHCTGATDGATGDKIQRARAQVQKK
NT seq
2520 nt
NT seq
+upstream
nt +downstream
nt
atggattgctacacggcgaactggaacccgctgggggattcggccttttaccggaagtat
gagttgtatagcatggactgggacctgaaggacgagctccgggattgcctggtagcagcc
gcgccctatgggggtcccatcgcgttgctcaggaacccctggagaaaggagaagtctgtc
agtatccggccggtgctggagatctactcagcttctggcatgcccctggccaacctactg
tggaagagcggcctggtggtgtccctgggctggtcggctgaggaggagctgctctgcgtg
caggaggacggcgtggtgctggtgtacgggctgcacggggacttccggaggcacttcagc
atgggcaacgaggtgctccagaaccgggttctcgatgcccgcatcttccataccgagttc
ggttccggggtggccatcctcacgggggcccaccgtttcacgctcagcgccaatgtcggc
gacctcaaactgcgccggatgccagaggtgccaggtctgcagagcgcaccctcgtgctgg
accacgctgttccaggagcgcgtggtgcatgtcctcctggctgtgggacctgacctgtac
ctgctggaccacgctgcctgctccgcagtgacactgccaggcctgcccccaggagtgagc
agcttcctgcagatggcagtctccttcaccaaccgccacctggccctcttcacagacacg
ggctgcatctggatggggacagcgtcgctcaaggagaagctgtgtgagttcaactgcaac
atccgcgcccccccaaagcagatggtctggtgcagccgtcctcggagcaaggagcgggcc
gtcgtggtggcctgggagaggaggctgatggtggtgggtgatgcgcctgagagcatccag
tttgtgctggatgaggattcctacctggtgcctgagctggacggggtccggatcttctct
cgcagtacccacgagttcctgcatgaggttccagcggccagtgaggagatcttcaaaatt
gcctcgatggcccctggagcgctgctgttagaggcccagaaggagtatgagaaagagagc
cagaaggcagatgagtacctgcgggagatccaggagctgggacagctgagccaggccgtg
cagcagtgcatcgaggcggcggggcacgagcaccagcccgacatgcagaagagcctgctc
cgggcggcctccttcgggaagtgcttcctcgaccggttcccccccgacagctttgtgcgc
atgtgccaggagctgcgcgtgctcaacgcggtccgggactatcacattggcatcccgctc
acctacagccaatacaagcagctcaccatccaggtgctgttggacaggcttgtgttgcgg
aggctttaccccctggccatccagatatgcgagtatctgcggcttcccgaagtgcagggt
gtcagccggatcctggcccactgggcctgctacaaggtgcagcagaaggatgtgtctgat
gaggatgtcgctcgggccattaaccagaagctgggggacacacccggcgtctcttactca
gatattgctgcgcgggcctatggctgtggtcgcacagagttggccatcaagctgctggag
tatgagccacgctctggggagcaagtaccccttctcctcaagatgaagcggagcaaactg
gccctgagcaaggctatcgagagtggggacacggacctggtgttcactgtgctgctgcac
ctgaagaacgagctgaaccgaggcgatttcttcatgacccttcggaaccagcccatggcc
ctgagcttgtaccgacagttctgcaagcatcaggagcttgagacgctgaaggatctctac
aaccaggacgacaaccaccaggagctgggcagcttccacatccgagccagctacacggca
gaggagcgcatcgagggccgagtcgctgctctgcagacagccgccgacgccttctacaag
gccaagaatgagtttgcagccaaggccacagaggatcagatgcggctcctccggctgcag
cggcgcctggaagatgagttgggtggccggttcctgaacctgtccttgcacgacaccgtc
actgccctcatcctgggcggtcacagcaagcgctcggagcagctggcccgcgacttccgc
atcccagacaagaggctctggtggctgaagctgacagccctggccgatctgggcgactgg
gaggagctggagaagttttcaaagagcaagaagtcacctatcggctacctgccctttgtg
gaagtctgcatgaagcagcataacaaatacgaggccaagaagtatgcgtcccgcgtgagt
cccgagcagaaggtcaaggccttgcttctcgtcggggatgtgtctcaggcggcagatgtg
gccattgagcaccggaatgaggcagagatgagcctcgtgttgtcccactgcactggagcc
acagatggggccacaggtgacaagattcagcgggccagggcgcaagtccagaagaagtga
DBGET
integrated database retrieval system
