Sorex fumeus (smoky shrew): 130030336
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Entry
130030336 CDS
T10594
Symbol
VPS8
Name
(RefSeq) vacuolar protein sorting-associated protein 8 homolog isoform X1
KO
K20178
vacuolar protein sorting-associated protein 8
Organism
sfum Sorex fumeus (smoky shrew)
Pathway
sfum04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
sfum00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
130030336 (VPS8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sfum04131
]
130030336 (VPS8)
Membrane trafficking [BR:
sfum04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
130030336 (VPS8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_VPS8
TPR_Vps8
zf_RING_Vps8
VPS8_N
TPR_VPS8_2
Beta-prop_WDR36-Utp21_1st
zf-RING_Vps41
TPR_Vps41
WD40_CDC20-Fz
zf_RING_Vps8_fungal
Clathrin
zf-RING_11
zf-RING_UBOX
zf-RING_2
zf-RING_5
zf-C3H2C3
Beta-prop_WDR3_1st
Beta-prop_WDR5
zf-C3HC4
GED
EIF3I
PHD
Motif
Other DBs
NCBI-GeneID:
130030336
NCBI-ProteinID:
XP_055977560
LinkDB
All DBs
Position
Unknown
AA seq
1425 aa
AA seq
DB search
MESESDHENLDQSFGAKTAEEELNKSFNLEASLSKFSYIDLDKELEFKNDLIDDKEFDIP
QVDTPPTLESILNETDDEDESFVLEDPTLLNIDTIDSHSYDTSSVASSDSGDRANLKRKK
KLPDSFSLHGSVMRHSLLKGISAQIVSAADKVDAGLPTAIAVSSLIAVGTSHGLALIFDQ
NQALRLCLGSTSVGGQYGAISALSINNDCSRLLCGFAKGQITMWDLASGKLLRSITDAHP
PGTAILHIKFTDDPTLAICNDSGGSVFELTFKRVMGVRTCESRCLFSGSKGEVCCIEPLH
SKPELKDHPITQFSLLAMASLTKILVIGLKPSLKVWMTFPYGRMDPSSVPLLAWHFVAVN
NYVNPMLAFCRGDVVHFLLVKRDESGAIHVTKQKHLHLYYDLINFTWINSRTLVLLDSVE
KLHVIDRQTQEELETVEISEVQLVYNSSHFKSLATGGNVSQALALVGEKACYQSISSYGG
QIFYLGTKSVYVMVLRSWRERVDHLLKQDCFTEALALAWSFHEGKAKAVVGLSGDASKRR
AVVADRMVEILFHYADRALKKCPDQGKIQVMEQHFQDMVPAIVDYCLLLQRKDLLFSQMY
DKLSENSVAKGVFLECLEPYILSDKLIGITPQVMKDLILHFQDKKLMENVEALIVHMDIT
SLDIQQVVLMCWENHLYDAMIYVYNRGMNEFISPMEKLFRVIAPPLNAGKTLTDEQVVMG
NKLLVYISCCLAGRAYPLGDIPEDLVPLVKNQVFEFLIRLHSAEASPEEEIYPYVRTLLH
FDTREFLNVLALTFEDFKNDKQAVEYQQRIVDILLKVMVENSDFTPSQVGCLFTFLARQL
AKPDNTLFVNRTLFDQVLEFLCSPDDDSRHSERQQVLLELLHAGGIVQFEESRLIRMAEK
AEFYQICEFMYEREHQYDKIIDCYLRDPLREEEVFNYIHNILSIPGHSAEEKQAVWQKAM
DHIEELVSLKPCKAAELVATHFSGQIEVVIKKLQNQVLLFKFLRSLLDPREGIHINQESL
QISPCITEQFIELLCQFNPSQVIETLQVLEGYRLEETIQITQKHELHEVTAYLLEKKGDV
HGAFLIMLKKLQSKLQEITHQEENTKVDPSLKDVEETMVETIGLCQRNSHNLNQQQREAL
WFPLLEAMMAPQKLSSSAAPHPHSEALKSLTMQVLNSMAAFIALPSILQRILQDPVYGKG
KLGEIQGLILGMLDTFNYEQTLLETTTSLLNQDLHWSLCNLRASVTRGLNPKQDYCSICL
QQYKRRQEMADEIIVFSCGHLYHSFCLQNKECMVETEGQTRWTCYKCSSSNKVGKLAETS
SEIKKGRITPSEVKTSPSFHPSKKDPAAEKTPSEPVLDPQQIQAFDQLCRLYRGSSRLAL
LTELSQNRGGEGCRPFSGSPSNAFNSIFQNENFQLQLVPPPVTED
NT seq
4278 nt
NT seq
+upstream
nt +downstream
nt
atggaaagtgaatcagaccatgaaaatttggaccagagcttcggtgccaagactgctgaa
gaagaactgaataagtctttcaatctagaagcttcactttcgaaattctcttacatagat
ctggacaaggaactggagttcaaaaatgacctgattgatgacaaggagtttgatatccct
caagttgacacgcctccaacactggaaagcatactgaatgagactgatgatgaagatgag
tcctttgttctcgaggatcctacattattaaacatagatactattgattctcattcctat
gacacttcatcggtggcaagctcagatagcggtgacagggccaacctaaaaaggaagaag
aaattacctgattctttttcactccatggatcagttatgcgacattcgcttttgaaggga
atttctgcccagatagtgtctgcagctgacaaagtagatgctggcttgcctacagcaatt
gccgtgtccagtttgatagcagtgggtacatcgcatggattggccttaatatttgatcag
aaccaagccttgcggctgtgtttggggagcacaagtgtcggaggtcagtatggtgccatc
tccgccctcagcatcaacaatgactgctcgagacttctctgtggctttgccaaaggacag
atcacgatgtgggatttggccagcggaaagcttctaagatcaataacagatgctcatcct
ccaggaactgcaattctgcatattaagtttacagatgacccaacccttgccatttgcaat
gacagtggaggatctgtctttgaattgacgtttaagagagtgatgggggtgagaacatgt
gaatcccgatgtctgttcagtggttccaagggcgaggtgtgctgcattgagccgctccat
tctaagcctgagctgaaagaccatcccatcacacagttctccttactggccatggcttcc
ctaaccaagatcctggtaattggattgaaaccgtccttgaaagtgtggatgactttcccc
tatggaaggatggatccttccagcgttcccctgctcgcctggcattttgtggccgtgaat
aattatgtaaaccccatgcttgccttctgcagaggagacgttgtccacttcctgttggtt
aagagagatgaatcgggagcaatacatgttactaagcaaaagcatcttcacctgtactac
gacctcatcaacttcacttggataaactcacgcacacttgtgctcttggacagcgtggag
aagttacatgtgattgatcggcaaactcaagaggaattggaaactgtggagatctcagaa
gttcagctggtctataatagcagtcatttcaagtcactcgccactggaggaaatgttagc
caggccctggctctggttggagagaaggcttgttaccaatccatcagcagctatggtggc
cagatcttttatttggggacaaaatctgtgtacgtgatggtgctgagaagctggagagag
agagtggatcacctcctgaagcaagattgtttcacggaagccttggcgctcgcgtggtct
ttccatgaggggaaagcaaaggcagtcgtgggattatccggggatgccagcaagcgaagg
gctgtggttgccgaccggatggtggaaatcttattccactatgcagaccgagctctgaag
aagtgcccggaccaggggaagatccaagtgatggagcagcacttccaggatatggtgccc
gccatcgtagattactgccttcttctacagcgaaaggatcttttatttagtcaaatgtat
gacaagttaagtgagaattcagtggccaaaggagtgtttttggaatgcctggagccatat
attttaagtgacaaattgataggaatcaccccgcaggtaatgaaagatttgatccttcat
tttcaagataagaagttaatggaaaatgtggaagccctcattgtgcatatggacatcacc
agcctcgatattcagcaggtggttctaatgtgttgggaaaaccatctatatgatgctatg
atctacgtctataatagaggcatgaatgaatttattagtccaatggagaaacttttcaga
gtcattgcacctcccctgaatgcaggaaagacattaacagatgagcaagttgttatgggc
aacaaacttcttgtatatatcagctgctgtctagcaggccgtgcctatccccttggtgac
atccccgaagatcttgtccccttggttaaaaaccaggtttttgaatttctaattcgattg
cattcagcagaagcctctccggaagaagaaatctatccctatgttcgaaccttgctacat
tttgacacaagagaattcctaaatgttttggcactgacttttgaagatttcaaaaatgac
aagcaagctgtagaatatcaacaacgcattgtggatattttgttgaaggttatggtggag
aattcagatttcactccttcgcaagtaggatgtctctttacatttcttgcccggcagctt
gcgaagcctgacaataccttgtttgtcaaccgaaccctttttgatcaggttcttgaattc
ctctgtagtcctgatgatgactctcgacactctgaaaggcagcaggtccttttagaactg
ctgcatgctggaggcatagttcaatttgaagagagccgactcattcgcatggcagaaaaa
gcagagttctatcagatttgtgaatttatgtatgaacgagaacaccaatatgacaaaatt
attgattgttacttacgtgaccctctaagagaggaagaagtctttaactacattcacaat
atcttgtccattcctggacacagtgcggaggagaagcaggctgtgtggcagaaagccatg
gatcatattgaggagcttgtgtccctgaagccttgtaaagccgcagagctggttgctacc
cacttttctggacagattgaagtggtcattaaaaaacttcagaaccaggttttgcttttc
aagtttttgagaagccttctggacccaagggaaggtattcacataaatcaagaatcacta
caaatatctccctgcattacagagcagttcattgagctgttgtgtcagtttaaccccagc
caagtcatcgagactctgcaagtcctggagggctaccggctagaggagacgattcagatt
actcagaagcacgaactacatgaagtcactgcctatctgttagaaaagaaaggagatgtt
catggtgccttcttaataatgctaaagaaactgcaaagcaaacttcaggagataacacac
caagaggaaaataccaaagtggacccttcattgaaggacgtcgaagagaccatggtggag
acaattggcctttgccagagaaattcccataatttgaaccagcagcaacgagaggcactc
tggttcccgctgttggaggcgatgatggccccgcagaagctgtccagttcggctgcacct
catccacactctgaagccctgaagtctttgactatgcaagttctaaacagcatggcagct
tttattgccctgccgtcaatcttgcagagaatcttacaggatccagtttatggaaaagga
aaacttggagaaatccaaggacttattctgggaatgttggatacctttaactatgaacag
accctgttggaaacaactactagccttctaaaccaagatctccactggtcactgtgtaac
ctccgagcttcggtcacccgaggactgaacccaaagcaggattattgctctatatgcttg
cagcagtacaagagacgccaagaaatggctgatgaaatcattgtctttagctgtggccat
ttgtatcactccttctgcctgcaaaacaaagagtgcatggtagagacagaggggcagaca
aggtggacgtgctacaagtgcagttcgagtaacaaagtggggaagttggccgaaacgtca
tcggaaattaagaagggaagaataactccgtcagaggtaaaaacgtctccgtccttccat
ccgtctaagaaggaccccgctgctgagaagacgccttccgaaccggtcctggacccacag
caaatccaagccttcgatcagctctgccggctctaccgcgggagttcccggctggccctc
ctcaccgagctctcgcagaaccgtggcggcgagggctgcaggccgttcagtggctccccg
agcaacgctttcaacagcatcttccagaatgagaacttccagctgcagctcgtgcccccg
cccgtgaccgaggactga
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