Sorex fumeus (smoky shrew): 130030614
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Entry
130030614 CDS
T10594
Symbol
TRIP12
Name
(RefSeq) E3 ubiquitin-protein ligase TRIP12 isoform X1
KO
K10590
E3 ubiquitin-protein ligase TRIP12 [EC:
2.3.2.26
]
Organism
sfum Sorex fumeus (smoky shrew)
Pathway
sfum04120
Ubiquitin mediated proteolysis
Brite
Enzymes [BR:
sfum01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
130030614 (TRIP12)
Ubiquitin system [BR:
sfum04121
]
Ubiquitin ligases (E3)
HECT type E3
130030614 (TRIP12)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Other DBs
NCBI-GeneID:
130030614
NCBI-ProteinID:
XP_055977932
LinkDB
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Position
Unknown
AA seq
2068 aa
AA seq
DB search
MSNRPNNNPGGSLRRSQRNTAGAQPQDDSIGGRSHLGQAKHKGYSPPESRKSNSKAPKVQ
SNTTSELSRGHLSKRSCSSSSAVIVPQPEDPDRANTSERQKTGQVPKKDNSRGVKRSASP
DYNRTNSPSSAKKPKALQHTESPSETSKPHSKSKKRHLEQEQQLKSAQLPSTSKAYTRKS
GAAGGSRSQKRKRTESSCIKSGSVSESTGAEEKSAKPTKLASKSAASAKAGCSTITDSSS
AASTSSSSSTVASASSTVPPGARVKQGKDQNKARRSRSASSPSPRRSSREKEQSKTGGSS
KFDWAARFSPKVSLPKTKLSLPGSSKSETSKPGPSGLQAKLASLRKSTKKRSESPPAELP
SLRRSTRQKTTGSCASASRRGSGLGKRGTAEARRQEKMADPESNQETVNPSAARTDETPQ
GAAASSSVAGAVGMTNSGESESDDSEMGRLQALLEARGLPPHLFGPLGPRMSQLFHRTIG
SGASSKAQQLLQGLQASDESQQLQAVIEMCQLLVMGNEETLGGFPVKSVVPALITLLQME
HNFDIMNHACRALTYMMEALPRSSAVVVDAIPVFLEKLQVIQCIDVAEQALTALEMLSRR
HSKAILQAGGLADCLLYLEFFSINAQRNALAIAANCCQSITPDEFHFVADSLPLLTQRLT
HQDKKSVESTCLCFARLVDNFQHEENLLQQVASKDLLTNVQQLLVVTPPILSSGMFIMVV
RMFSLMCSNCPTLAVQLMKQNIAETLHFLLCGASNGSCQEQIDLVPRSPQELYELTSLIC
ELMPCLPKEGIFAVDSMLKKGNAQNTDGAIWQWRDDRGLWHPYNRIDSRIIEVAAHQVGE
DEISLSTLGRVYTIDFNSMQQINEDTGTARAIQRKPNPLANTNTSGYSELKKDDARAQLM
KEDPELAKSFIKTLFGVLYEVYSSSAGPAVRHKCLRAILRIIYFADAELLKDVLKNHAVS
SHIASMLSSQDLKIVVGALQMAEILMQKLPDIFSVYFRREGVMHQVKHLAESESLLTSPP
KSCPNGSGSLGSTTSVSSGTATAASNAAADLGSPSLQHSRDDSLDLSPQGRLSDVLKRKR
LPKRGPRRPKYSPPRDDDKVDNQAKSPTTTQSPKSSFLASLNPKTWGRLSAQSNSNNIEP
ARTAGVSGLARAASKDTISNNREKIKGWIKEQAHKFVERYFSSENMDGSNPALNVLQRLC
AATEQLNLQVDGGAECLVEIRSIVSESDVSSFEIQHSGFVKQLLLYLTSKSEKDAVSREI
RLKRFLHVFFSSPLPGEEPIGRVEPMGNAPLLALVHKMNNCLSQMEQFPVKVHDFPSGNG
TGGSFSLNRGSQALKFFNTHQLKCQLQRHPDCANVKQWKGGPVKIDPLALVQAIERYLVV
RGYGRVREDDEDSDDDGSDEEIDESLAAQFLNSGNVRHRLQFYIGEHLLPYNMTVYQAVR
QFSIQAEDERESTDDESNPLGRAGIWTKTHTIWYKPVREDEESNKDCVGGKRGRAQTAPT
KTSPRNAKKHDELWHDGVCPSVSNPLEVYLIPTAPENITFEDPSLDVILLLRVLHAISRY
WYYLYDNAVCKEIIPTNEFINSKLTAKANRQLQDPLVIMTGNIPTWLTELGKTCPFFFPF
DTRQMLFYVTAFDRDRAMQRLLDTNPEINQSDSQDSRVAPRLDRKKRTVNREELLKQAES
VMQDLGSSRAMLEIQYENEVGTGLGPTLEFYALVSQELQRADLGLWRGEEVTLSNPKGSQ
EGTKYIQNLQGLFALPFGRTAKPAHIAKVKMKFRFLGKLMAKAIMDFRLVDLPLGLPFYK
WMLRQETSLTSHDLFDIDPVVARSVYHLEDIVRQKKRLEQDKSQTKESLQYALETLTMNG
CSVEDLGLDFTLPGFPNIELKKGGKDTPVTIHNLEEYLRLVIFWALNEGVSRQFDSFRDG
FESVFPLSHLQYFYPEELDQLLCGSKADTWDAKTLMECCRPDHGYTHDSRAVKFLFEILS
SFDNEQQRLFLQFVTGSPRLPVGGFRSLNPPLTIVRKTFESTENPDDFLPSVMTCVNYLK
LPDYSSIEIMREKLLIAAREGQQSFHLS
NT seq
6207 nt
NT seq
+upstream
nt +downstream
nt
atgtccaaccggcctaataacaatccaggggggtcactgcgacgttcacagaggaacacc
gccggggcccagccacaagacgactcaataggaggaaggtcacatttagggcaggcaaaa
cataagggatatagccctcctgagagtagaaaatctaattctaaggcacccaaagtgcag
tctaatactacttctgaactgtcaaggggacacctttctaaaagaagctgcagttcatca
tctgctgttatagttccacaaccagaggatccagacagagccaatacttcagaaaggcaa
aaaacggggcaggtgcctaagaaagacaattctcgaggagtgaaacgcagtgctagtcca
gactacaacaggaccaattctcctagctctgcgaaaaaacccaaagcacttcagcatact
gagtctccgtcagaaacgagtaagccgcatagtaagtcaaagaagagacatttagagcaa
gagcaacaactgaaatctgcacaattgccatcaacaagcaaggcttacaccagaaagagt
ggggctgctggtggttcacgaagccagaaaagaaagaggaccgagagttcttgtataaag
agtggttctgtgtctgaatcaactggtgccgaagagaaatctgcaaaacctaccaagctg
gcttcaaaatcagccgcctcagccaaagctgggtgtagcaccatcaccgattcttcttct
gctgcctcgacttcctcctcctcttctactgtagcctcggcctcctccactgtaccacca
ggtgccagggtgaagcagggcaaagaccagaacaaggccaggcgttctcgttcggcgtcc
agtcccagtcccagaagaagtagcagggaaaaggaacagagtaaaactggtggctcttca
aaattcgattgggctgctcgcttcagccctaaagttagccttcctaaaacaaaactgtct
cttccagggtcttctaagtcagagacatcaaaacctggaccttctggattacaagccaaa
ttagcaagtttaagaaaatcgaccaagaagcgcagtgaatccccacctgctgagctcccc
agtttaaggcggagcacacgccaaaagaccacgggctcctgtgctagtgccagtcggcga
ggctctggcctgggcaagagaggaacagcggaagctcgtcgacaggagaaaatggcagac
cctgagagtaaccaggagacagtaaatccttcagctgcacggacggacgaaactccccag
ggagcagcagcttccagttctgttgcaggagctgtgggcatgaccaactctggggaaagt
gagtcagatgattcagagatgggacgattacaagctctactagaagccagaggccttcca
cctcacctgtttggtcctcttggtcctcggatgtcacagcttttccatagaacaattgga
agtggagctagttctaaggcccagcagcttctacagggactgcaagccagtgacgaaagt
cagcagctccaggccgtgattgagatgtgtcagttactggtcatgggcaatgaggagaca
ctgggagggtttcctgtcaaaagcgtcgttcccgctttgataacattattgcagatggag
cataattttgatattatgaaccacgcctgtcgagccttaacatacatgatggaagcactt
cctcgctcatctgctgttgtggtagatgcgattcctgtgtttttggaaaagctgcaagtg
attcagtgtattgatgtggcagagcaggccctgactgccttggagatgttatcacggaga
cacagtaaagccattctgcaggcaggtggtttggcagactgcctgctgtatctcgagttc
ttcagcattaatgcccaaagaaatgcactagcaattgcagccaattgctgccagagtatc
acgccggatgaatttcattttgtggcagattcccttccattgcttacccaaaggctaacc
catcaggacaaaaagtcagtggaaagcacttgcctttgttttgcacgtctggtggacaac
ttccaacatgaagagaatttactccagcaggttgcctccaaagatctgcttacaaatgtt
caacaactactggtagtgactccaccaattttaagttctgggatgtttataatggtagtt
cggatgttttctctgatgtgctccaactgtccgacgttagctgttcagctcatgaagcaa
aacattgcagaaactcttcactttctcctgtgtggtgcctccaatggaagttgtcaggaa
cagattgatcttgttccgcgaagtcctcaagaactgtatgaattgacatctctgatttgc
gaacttatgccgtgtttacccaaggaaggcatttttgctgttgacagcatgctgaagaag
ggcaatgcgcagaacacagatggagcgatatggcagtggcgagacgaccggggcctctgg
catccgtacaacaggattgacagccggatcattgaggtagcagcccatcaggtcggtgag
gatgagataagcttgtccactctgggacgagtttatactattgattttaattctatgcag
caaatcaatgaggacacgggaacagcacgtgccattcagagaaaacctaaccccttagcc
aatactaacactagtggatattcagagttaaagaaggatgatgctcgagcacagcttatg
aaagaggatccggaactggctaagtcttttattaagacattgtttggtgttctttatgaa
gtgtatagttcctcagcaggacctgcggtcagacataagtgccttagagcaattcttagg
ataatttattttgcggatgctgaacttctgaaggatgtcctgaaaaatcatgctgtttca
agtcacattgcttccatgctatcgagccaagacttgaagatagtagttggagcacttcag
atggcagaaatcttaatgcagaagttacctgatatttttagtgtttacttcagaagagaa
ggtgtaatgcatcaagtgaaacacctagcagaatcagagtctttgttgacgagtccacca
aagtcatgtcctaatgggtcaggatccttgggatccacgacctctgtcagcagtgggaca
gccaccgctgccagtaacgccgcagcggatctgggatctcccagcttacagcacagcaga
gacgattctttagatctgagccctcaaggtcgattaagtgatgttctaaagagaaaacga
ctgccaaaacgggggccaagaaggccaaagtattcacctccaagagatgatgacaaagta
gacaatcaagctaaaagccccactactactcagtctccgaaatcttcttttctggcgagc
ttgaatccaaaaacatggggaagattaagtgcacagtccaacagcaacaacattgaacca
gcgcgaactgcaggagtgagtggtctcgcccgggctgcctcaaaggacaccatatccaat
aatagggaaaaaattaaaggttggattaaggagcaggcgcataaatttgtagagcgttac
ttcagttcagagaatatggatggaagtaaccctgcactgaatgttcttcagagactttgt
gctgcaactgaacaactcaacctccaggtggatggtggagctgagtgccttgtagaaatc
cgtagcatagtctcagagtcagatgtttcatcgtttgaaatacagcatagtggatttgtg
aagcagctgttactttatttgacatctaaaagtgaaaaggatgctgtgagcagagagatc
agattaaaaagatttcttcatgtatttttttcttctccacttcctggagaagagcccatt
ggaagagtagaaccgatgggtaatgcacctttgttggcattagttcacaagatgaacaac
tgcctcagccaaatggaacagtttcctgtcaaagtacatgacttccccagtggaaatggg
acaggaggcagcttttctctcaacagaggatcacaggctttaaaattttttaacacgcat
cagttaaaatgccagttacaaagacatccagactgtgcaaatgtgaagcagtggaagggc
ggacctgtcaagatcgaccctctggctttggtgcaagctattgagagataccttgtagtt
agagggtatggaagagtgagagaagacgatgaagacagtgatgatgacggctccgatgag
gaaatagatgagtccctggctgctcagttcttaaattctggaaacgttagacacagactt
cagttttacatcggagaacatttgctcccatacaacatgacggtgtaccaggcagtgcgg
cagttcagtattcaggccgaggatgagcgggagtccacggacgacgagagcaatcctctg
ggaagagccggtatttggacaaagacacatacaatatggtacaagcctgtgagggaggat
gaagaaagtaataaagattgtgttggtggtaaaagaggaagagcccaaacagctccaacg
aaaacttccccaagaaatgcaaaaaagcatgatgagctttggcatgacggagtgtgtccg
tcagtgtcaaatcctttagaagtttatcttatacccacggcgcctgaaaatataactttt
gaagacccatcattagatgtgattctcctcttaagagttctacatgctatcagtcgatac
tggtattatttgtatgataatgcagtatgtaaggagattattccaactaatgaatttatt
aatagtaagttgacagcaaaggcaaataggcagcttcaagatcccttagtaatcatgaca
ggaaacatcccaacgtggctgactgaactagggaaaacctgcccgtttttcttccctttt
gatacccggcaaatgctgttttatgtaactgcatttgatcgggatcgagcaatgcaaaga
ttacttgataccaacccagaaatcaaccagtctgattctcaagatagcagagttgcacca
agactggataggaaaaaacgcactgtgaacagagaggagctcttgaagcaggctgagtct
gtgatgcaggatctcggcagctcccgggccatgttggaaatccagtatgaaaatgaggtt
ggtacaggtcttggacccacactggagttttatgcacttgtatctcaggaactgcagaga
gctgacttgggtctctggagaggtgaagaagtaacacttagcaatccaaaaggaagccaa
gaagggaccaagtatattcaaaacctccagggcctgtttgcgcttccctttggtagaaca
gctaagccagctcatattgcaaaagttaagatgaagtttcgcttcttaggaaaattaatg
gccaaggctatcatggatttcagattggtggaccttccccttggcttacccttttataag
tggatgttgaggcaagaaacttcactgacgtcgcacgatttgtttgacattgacccagtt
gtagccagatcagtgtatcacttagaagacattgtcaggcagaagaaaagacttgaacaa
gataaatctcagaccaaagagagtctacaatatgcattagaaaccctaactatgaacggc
tgctcagttgaagatctaggcttggatttcactctgccagggtttcccaacatcgaactg
aagaaaggaggaaaggatacaccagtcacgatccacaacttagaggaatatctaaggttg
gttatattctgggcactaaatgaaggtgtttcccggcaatttgattcgttcagagatgga
ttcgagtcagtcttcccactcagtcatcttcagtacttctacccagaagaactggatcag
ctgctgtgtggcagtaaggctgacacttgggatgcaaagacactgatggaatgctgccgg
cctgatcacggttatactcatgacagtcgggctgtgaagttcttgtttgagattctcagt
agttttgataacgagcagcagaggttatttctccagtttgtgacaggtagcccaagattg
cctgttggaggcttccggagtttgaatccacctttgacaatagtccggaagacattcgaa
tccacagaaaacccagatgacttcctgccctctgtaatgacttgtgtgaactatcttaag
ttgccggactattcgagcattgagatcatgcgtgagaagctgttgatagccgcgcgggaa
gggcagcagtcgttccatctttcctga
DBGET
integrated database retrieval system
