Sorex fumeus (smoky shrew): 130030747
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Entry
130030747 CDS
T10594
Symbol
CHD6
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 6 isoform X1
KO
K14436
chromodomain-helicase-DNA-binding protein 6 [EC:5.6.2.-]
Organism
sfum Sorex fumeus (smoky shrew)
Brite
KEGG Orthology (KO) [BR:
sfum00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
sfum03036
]
130030747 (CHD6)
Chromosome and associated proteins [BR:
sfum03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
130030747 (CHD6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_CHD6-9
Helicase_C
Chromo
ResIII
DEAD
HTH_Hrp3
HDA2-3
MUN
Chromo_MIT1
Motif
Other DBs
NCBI-GeneID:
130030747
NCBI-ProteinID:
XP_055978061
LinkDB
All DBs
Position
Unknown
AA seq
2733 aa
AA seq
DB search
MIMKIQKKEKQLSNLKDLNHSPMSDASVNFDYKSPSPCDGSTDQEERTDDVASHCLPERD
LYAAEEDAETLFPRKMTSHNGLEDSGGGGTGVKKKRKKKDPGEHEGAAKGSKDREPKPKR
KREPREPKEPRKAKEPKKAKEPKEPKETKQKDGAKKARKPREASGSKEAKEKRSGTDSSA
RTKSKKASKEQGPTPVEKKKKGKRKSETTVESLELDQGLPNPSLRSAEESTESADSQKRR
SGRQVKRRKYNEDLDFKVVDDDGETIAVLGAGRTSALSASTLAWQAEEPPEDDANIIEKI
LASKTVQEVHPGEPPFDLELFYVKYRNFSYLHCKWATMEELEKDPRIAQKIKRFRNKQAQ
MKHIFTEPDEDLFNPDYVEVDRILEVAHTKDAETGEEVTHYLVKWCSLPYEESTWELEED
VDPAKVKEFESLQVLPEIKHVERPASDSWQKLEKSREYKNSNQLREYQLEGMNWLLFNWY
NRKNCILADEMGLGKTIQSITFLSEIFLRGIHGPFLIIAPLSTITNWEREFRTWTEMNAI
VYHGSQISRQMIQQYEMVYRDAQGNPLSGVFKFHVVITTFEMILADCPELKKIHWSCVII
DEAHRLKNRNCKLLEGLKLMALEHKVLLTGTPLQNSVEELFSLLNFLEPSQFPSETAFLE
EFGDLKTEEQVKKLQSILKPMMLRRLKDDVEKNLAPKQETIIEVELTNIQKKYYRAILEK
NFSFLTKGANQHNMPNLINTMMELRKCCNHPYLINGAEEKILEDFRKTHSPDASDFQLQA
MIQAAGKLVLIDKLLPKLIAGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNL
RQAAIDRFCKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIG
QSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQDINRKGSTNGVQQLSKMEVEDLLR
KGAYGALMDEEDEGSKFCEEDIDQILQRRTHTITIQSEGKGSTFAKASFVASGNRTDISL
DDPNFWQKWAKIAELDTEAKNEKESLVIDRPRVRKQTKHYNSFEEDELMEFSELDSDSDE
RPTRSRRLNDKTRRYLRAECFRVEKNLLIFGWGRWKDILTHGRFKWHLNEKDMEMICRAL
LVYCVKHYKGDEKIKSFIWELITPTKDGQAQTLQNHSGLSAPVPRGRKGKKTKNQLLLPE
LKNADWLATCNPEVVLHDDGYKKHLKQHCNKVLLRVRMLYYLKAEILGEAADKAFEGAPA
RDLEVPLPDIDYVEIPVDWWDAEADKSLLIGVFKHGYERYNAMRADPALCFLEKVGMPDE
KSLSAEQGAADGGSDIPERGNVDKEDSAEDKIDGLQKQMESSSDGGDGIFSEKKDDSQAA
QDGSDSDKSPWPVPSALTARLRRLVTIYQRCNRKDLCRPEILGPGSQGYWGQEEMFRRTS
EMDLINKEAQKRWTRREQADFCRAVSSFGVVYDQEKKTFDWTQFRIISRLDKKSDESLEH
YFYSFVAMCRNVCRLPAWMDGGPLDPTIYVEPIPEERAARTLYRIELLRKVREQVLTCPQ
LHERLQLCRPSLYLPVWWECGKHDRDLLIGTAKHGLNRTDYYIMTDPQLSFLDAYRNYAQ
HKRPDPQAPESLCCLYQTNSKLYESLTYNPGSRTSEALESEPENLVKIDGRDELGLAGGS
LADLTCENLISKVQDVISVSHDEGLLPESLESMMYGKKALGREPGSFQENPRADTESRKD
PLALSAVSEGDCQAAAGHEADATSGSSIMSSLEAGVAQMNIKNGKHLLMSLSKDGDLCCD
ESRPRPESIGQLETKCFASSSLDQGNESGFVDMCNLSVCESKRNLSSEQQLIDLLESKSL
ESKLTLSQNHSDEEEEEEENEEESLDLATGLRERPEALHLPEPTVRGPGDRSCDFALGEA
KKGSADVLNLGPGPQHAFPPAAYQCPCKHVERWARGFDGDGFELEKPKAYGPDLHKGQTN
HPAVEGEPPAISSEPFKVKADLLKESWKESAEGKKGFPPYPPEGSELKSEDMDFEGKDDY
ERDGNCHSQGHASPGLPFLPDYPGKYSEEESKSSASGITGDGDDPQEVRAPTIAQLLQEK
TLYSFSEWPKDRVIINRLDNICHVVLKGKWPSSQQYEPSGTLPTPALTSSAGSRSSLSEP
EASEHSFSGGAAVASQVPKENFLSPGFTKEEQKHRRPYEFDVDRDAKGRSLEQFSATHGH
PPIILNGWHGESAIDLSCTSEGSPGGTSPFPVSASTPKIGAISSLQGALGMDLSGILQAG
LIHPVTGQIVNGSLRRDDAALRRRRGRRRHVEGGMDLILLKEQTLQAGILEVHEDPAQAP
LSASHAEGPVPASLAPEPAPAPSAQAEKPIPSKSLLDWLRQQADYSLEAPGFGANFSDKP
KQRRPRCKEPGKLDVSSLSGEERVPAVPKEPGLRGFLPENKFNHSLPEPALRDAGPRRRG
RRPRSELLKAPAMVADSASGMGPLFMNGLIAGMDLVALQNMRNMPGIPLTGLVGFPAGFA
AMPTGEEVKSTLSMLPMMLPGMAAVPQMFGVGGLLNAPMAPTCSSAGPAAAAPLSSTTKS
GPAAAEKAAEDKPAGHDVSTDALAADKPGPGPFSDQSEPAITTSSPVAFNPFLLPGVSPG
LIYPSMFLSPGMGMALPAMQQARHSEIVGLESQKRKKKKTKGDHPTPEPASASEKEAGSD
PNGPESRAPAPPDREHACQAREGGPKDSNSDTN
NT seq
8202 nt
NT seq
+upstream
nt +downstream
nt
atgataatgaaaatacagaagaaagagaagcagttgtcaaatttaaaagatctgaatcac
tccccaatgtctgatgcctctgtcaattttgactacaaatccccctccccctgtgacgga
agcactgaccaggaagagagaaccgatgatgttgccagccactgtttgcccgagagggac
ctgtatgctgctgaggaggacgccgagacccttttccctcggaaaatgacatcccacaat
ggactggaggacagcggaggcggcggcactggcgtgaagaagaaacggaagaaaaaggat
cccggagagcatgagggggcagcgaaggggagcaaggacagggagcccaagccaaagagg
aagcgcgagcctagagagccaaaggaacccaggaaggccaaggagcccaagaaagccaag
gagcccaaggagcccaaggaaaccaagcagaaggacggagccaagaaagcgcggaagcct
cgcgaggcctcgggctctaaggaggccaaagagaagaggagcggcacagactcctcggcc
cggacaaagtccaagaaggccagcaaggagcaaggaccaaccccagtggagaaaaagaag
aaaggaaaaaggaaaagtgaaaccaccgtggagagtttagagctggatcagggcctgccc
aacccatccctgcggagtgctgaggaatccaccgagtctgcagatagccagaaaagacgc
tccggacggcaagtgaagcgcagaaaatacaacgaggacctggacttcaaggtggtggat
gacgatggggaaacgatcgctgttcttggggccggccggacgtcggccctctcagcttcc
acactggcctggcaggcggaggaacctccagaagatgacgcaaacatcattgagaagatc
ctggcatctaagaccgtccaggaggttcacccaggagagccaccattcgacctggaactc
ttctacgttaagtacagaaatttttcctacttacattgtaaatgggctacaatggaagag
ctcgaaaaggatcctcgcatcgcacagaagatcaagcggtttaggaataaacaagcccag
atgaagcacatttttactgagcctgatgaagacttgttcaaccctgactatgtcgaagtt
gatcgtatcttggaggtggcccacaccaaggatgcggagacaggagaggaggtgacacat
tacctggtaaagtggtgctcgctgccttacgaggaaagcacgtgggagctcgaagaagat
gtggatcccgccaaagtgaaggagttcgagtctctccaagttcttcctgagattaagcac
gtggagcggcccgcttcagactcctggcagaaactggagaagtctcgcgagtataagaac
agtaaccagctccgagaataccagctggagggaatgaactggcttctttttaactggtat
aacagaaaaaactgtattttggctgatgagatgggcctagggaaaactatccagtccatc
acattcctttcagaaatatttctcaggggaatccatggccctttcctcatcattgctcct
ctgtccaccatcacgaactgggagcgggagttccggacgtggacagagatgaatgccatt
gtgtaccacggcagccagatcagcaggcagatgatccagcagtacgagatggtgtacaga
gatgcacagggaaaccctctttcaggagtcttcaagttccacgttgtcatcaccaccttt
gagatgatcttggcagactgccccgagctgaagaagatccactggagctgtgtgataatc
gatgaagcccacagattgaagaacaggaactgcaagctgctggagggcctgaaactcatg
gccctggaacacaaagtgctgctcactggtacgcccttgcagaactctgtggaggagctc
ttcagtctgctgaattttctggagccatcacagttcccttcagagactgctttcttggaa
gagttcggagatttgaaaacagaggaacaggtaaagaaactgcaatctatcttaaaaccc
atgatgcttcggcggctgaaagatgacgtggaaaagaaccttgctcccaaacaagagaca
atcattgaagtagagttgaccaatatccaaaaaaaatactatcgtgccatcctggagaag
aacttttccttcttgaccaaaggggccaatcagcacaacatgcccaatctcatcaacacc
atgatggagctgaggaagtgctgtaaccatccctacctgatcaatggggcagaggagaaa
atcctggaagatttccgaaaaacccacagccccgacgcctctgactttcagctgcaggcc
atgatccaggccgccggaaagctggtactgattgataaactgctccctaaactgattgca
ggtggccacaaagtgctcatcttctcccagatggtgcgctgcctcgatatcctggaagat
tacctcatccagagaagatacacctatgagcggatcgatgggcgagtacggggaaacctg
cgccaggcagccatcgaccggttctgtaagccagactcagaccgctttgtctttctcctg
tgcaccagagcgggaggcctggggatcaatctcacagctgccgatacctgcatcatattt
gattcagactggaacccgcaaaatgacttgcaggctcaggcccgatgtcaccggataggc
cagagcaaagccgtgaaggtatatcgcctcattacccggaactcctatgagcgagagatg
ttcgacaaagccagcctaaaactaggcctggacaaggctgttcttcaggacatcaaccgc
aagggcagtaccaacggagtgcagcagctttcaaaaatggaggtggaggacttgctccgg
aagggagcttatggtgccctaatggatgaagaagatgaaggctccaaattctgtgaagag
gacatagaccagattctgcagcggagaacgcataccatcaccatccagtcggaagggaag
gggtccacgttcgccaaggctagctttgtggcttcaggaaatagaactgatatttcctta
gatgacccgaatttttggcagaaatgggccaaaatagctgaactggacactgaagcaaaa
aatgaaaaggaaagcttagtgatcgaccggcctcgcgtgaggaagcagaccaagcactac
aactccttcgaggaggacgagctcatggagttttccgagttagacagtgactctgatgag
aggcccacaagatcccggcgtctcaatgacaaaaccaggcgctacctccgagccgagtgc
ttccgggtggagaagaacctgctcatcttcggctggggccggtggaaggacatcctgact
cacgggcggttcaagtggcatctgaacgagaaggacatggagatgatttgccgtgccctg
ctggtgtactgtgtcaagcattacaaaggggatgagaagatcaagagcttcatttgggaa
ctcatcacacctaccaaagacgggcaggcccagacccttcagaaccactcaggattgtct
gctccagtccccagagggaggaaggggaagaagacgaagaaccagctgctgctcccagag
ctcaagaatgccgactggctggccacctgcaaccctgaggtggtcttgcacgatgatggc
tacaagaagcacctcaaacagcactgcaacaaggtgcttctgcgtgtccggatgctctac
tatctcaaagcagaaattctgggagaagcagccgataaagcgtttgaaggagctcctgcc
agggacctggaagtgcctctgcccgacattgactacgtggagatccccgtggattggtgg
gacgccgaggccgataagtccctcctgattggagtgttcaaacacgggtatgagaggtac
aatgccatgcgagccgacccagcactctgcttcctggagaaagtcgggatgccagatgag
aagtccctgtctgcagagcagggcgctgccgatgggggctcagacattcctgaacgaggt
aatgtggataaagaagacagtgctgaagacaaaatagatggtctccagaaacaaatggag
agctccagtgatggaggtgatggcatctttagcgagaagaaggatgacagccaggcagcc
caggatggctccgactcagacaaatcgccctggccagttccatccgctctcacggctcgt
ctccggcgtctggtcaccatttaccagcggtgcaaccgcaaggacctctgtcggcctgaa
atcctggggccagggagccaagggtactggggccaggaagaaatgttccggagaacctct
gagatggatcttatcaacaaggaagcccagaagaggtggacaagacgagagcaagcagac
ttctgcagagcagtgtcctcctttggcgtcgtttacgaccaagagaagaaaaccttcgac
tggacgcaattccgcatcatttcgcgcttggacaagaagtcagatgaaagcctagaacat
tatttttatagttttgtagccatgtgccgaaacgtctgtcgcctgcctgcatggatggat
ggtggccccctggaccccaccatctacgttgagcccatccccgaggagagagctgccaga
actctgtaccgcatcgaactgttacggaaggtccgagagcaggtgttgacgtgtcctcag
ctgcacgagcgtctccagctgtgcaggcccagcctctacctccccgtgtggtgggagtgc
gggaagcacgaccgcgacctgcttatcggcaccgccaagcacgggctgaaccgcaccgac
tactacatcatgacggacccccagctgtccttcctggacgcctacaggaactacgcgcag
cataagagacccgacccccaggcgccagagagcctctgctgcctttatcagaccaattcc
aaactgtacgagtcactcacctataacccagggagcaggacttcggaggccctggaaagc
gagcccgagaatctcgtgaaaatcgacggcagagatgagctcgggctggctgggggcagc
ctcgccgacctgacctgcgagaacctcatttcaaaagtccaggacgtcatttctgtcagc
cacgatgagggtctgctgccggagtccctggagagcatgatgtacggtaagaaggccctc
ggccgggagccgggttcttttcaggagaatcccagggctgacacagaatccaggaaagac
ccactggccctctcagctgtcagtgagggggactgccaggcggcagccggccatgaggca
gacgccacctcagggtcctctatcatgagcagtttggaagcaggcgtggctcagatgaac
atcaaaaatggaaagcatttattgatgtccctttccaaggacggggatctctgctgtgac
gaaagccggccgcggcccgagagcattgggcagctggaaaccaaatgcttcgcttcctct
tccttggatcaaggaaatgaaagtgggtttgtggacatgtgcaatcttagtgtctgtgag
tccaaaagaaacctctcgtcggagcagcagctgatcgacttactagaaagcaagagttta
gaaagtaaattgactttgagtcagaatcacagtgatgaggaggaagaggaagaagagaac
gaggaggaaagcttagacctggccacaggcctccgggagaggcccgaggctctgcatctc
cctgagcccacggtgagggggccaggggacaggagctgtgactttgccctcggcgaagcc
aagaaaggaagcgcggacgtgctcaacctgggcccagggcctcagcatgctttccctccc
gcggcctatcagtgtccctgcaagcacgtggagcggtgggcacggggcttcgacggtgac
gggttcgaactggagaaacccaaggcttatggcccagacctgcacaaaggccaaaccaac
caccctgcagtggagggcgagccccctgccatttcctcggagccctttaaagtgaaggct
gatctgctgaaggaatcttggaaagaaagtgcagaaggcaaaaaaggtttccctccgtac
cccccggaaggaagcgagctcaagtcagaagacatggatttcgagggcaaagatgattat
gagagagatggaaactgccatagccaaggtcacgcttctcctggtttgcctttcctccca
gattacccagggaaatactccgaagaggagagcaagagttcggcatcaggcatcacaggc
gacggggatgacccccaagaggttcgagcccccaccatcgctcagctgctccaggagaag
accctctattccttctccgagtggccaaaggatcgcgtgataatcaaccgcctagataat
atctgccacgtggtgttgaaggggaagtggccctccagccagcagtacgaaccctcgggc
acattgcccacccctgcattaaccagcagtgccggctctcggagcagcctctccgagcca
gaagcatcggaacacagcttcagcggtggtgcggctgtggcgtcccaggtccccaaggag
aacttcctgagtccaggattcacaaaggaagaacaaaagcacaggcgtccttatgagttt
gacgtggacagggatgcaaagggccggagcctggaacagttctctgctacccacggacac
ccccccatcatcctcaacggctggcatggggagtcggccatcgacctctcctgcacgtca
gagggatccccaggaggcacatctcctttcccagtgagtgccagcaccccgaagataggg
gccatcagttcacttcaaggagcccttggcatggacttatctgggattctccaagccggc
ctcatccaccctgtgacggggcagattgtcaacggaagcctcagaagagacgacgctgcc
ctgcggaggcggagagggaggcggagacatgtcgagggagggatggacctcatccttctg
aaggagcaaacactccaggcaggaatcttggaagtccacgaagaccctgcacaggccccc
ttgagcgcctcccacgctgagggtcccgtgcctgcctccttggcccctgagccagccccg
gcccccagtgcccaggccgagaagcccattcccagcaagagtctgctggactggctgagg
cagcaggccgactactctctggaagcccccggattcggagcaaatttttcagacaaacca
aagcagaggagaccacgctgtaaggaacctggaaaattagacgtcagctccctgagtggg
gaagagagggttcctgctgtccccaaggagccaggactgaggggctttctcccagaaaac
aagttcaaccactccctgccggagccggctcttcgggacgcaggcccacgccggaggggg
cggcggccacggagcgagctcctgaaggctccggccatggtggcggactcggcctcgggg
atggggcccctgttcatgaacgggctcatcgccggcatggacctggtggcgctgcagaac
atgcggaacatgcctggcatcccgctcacggggctggtgggcttcccggcgggctttgcc
gccatgcccaccggcgaggaggtcaagagcacgctgagcatgctgcccatgatgctgccg
ggcatggccgccgtgccccagatgttcggcgtcggggggctcctcaacgcgcccatggcc
cccacctgctcctcggccgggccggcggcggcggcacctctgtcaagcacaacgaaaagt
ggcccggccgccgcagagaaggccgccgaggacaagccggccggtcacgacgtgagcacg
gacgcgctggccgcagacaagcccggccctggcccgttttctgatcagtcggaacccgca
ataactaccagtagtcctgtggcttttaacccgttcctcctcccgggcgtgtcccccgga
ctcatctacccgtccatgttcctgtcccctggcatgggcatggccctgccagccatgcag
caggccagacactcggagatcgtcggtctagagagccagaagaggaagaagaagaaaacg
aaaggggaccaccccacccccgaacctgcttctgcgtccgaaaaggaggcgggcagtgac
cccaacggccccgagtccagggcccccgcccccccggatcgagaacacgcgtgccaggcc
agggaagggggccccaaggactccaacagtgacaccaattag
DBGET
integrated database retrieval system
