Sorex fumeus (smoky shrew): 130031358
Help
Entry
130031358 CDS
T10594
Symbol
SNRNP200
Name
(RefSeq) U5 small nuclear ribonucleoprotein 200 kDa helicase
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
sfum Sorex fumeus (smoky shrew)
Pathway
sfum03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sfum00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130031358 (SNRNP200)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sfum03041
]
130031358 (SNRNP200)
Enzymes [BR:
sfum01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
130031358 (SNRNP200)
Spliceosome [BR:
sfum03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
130031358 (SNRNP200)
Complex C
U5 SnRNP specific factors
130031358 (SNRNP200)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sec63
SNRNP200_wHTH
DEAD
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_22
AAA_30
PhoH
SWI2_SNF2
DUF603
Motif
Other DBs
NCBI-GeneID:
130031358
NCBI-ProteinID:
XP_055978580
LinkDB
All DBs
Position
Unknown
AA seq
2136 aa
AA seq
DB search
MADVTARSLQYEYKANSNLVLQADRSLIDRTRRDEPTGEVLSLVGKLEGTRMGDKAQRTK
PQMQEERRAKRRKRDEDRHDINKMKGYTLLSEGIDEMVGIIYKPKTKETRETYEVLLSFI
QAALGDQPRDILCGAADEVLAVLKNEKLRDKERRKEIDLLLGQTDDTRYHVLVNLGKKIT
DYGGDKEIQNMDDNIDETYGVNVQFESDEEEGDEDVFGEVREEASDDDMEGDEAVVRCTL
SANLVASGELMSSKKKDLHPRDIDAFWLQRQLSRFYDDAIVSQKKADEVLEILKTASDDR
ECENQLVLLLGFNTFDFIKVLRQHRRMILYCTLLASAQSEAEKERIMGKMEADPELSKFL
YQLHETEKEDLIREERTRRERVRQSRMDTDLETMDLDQGGEALAPRQVLDLEDLVFTQGS
HFMANKRCQLPDGSFRRQRKGYEEVHVPALKPKPFGSEEQLLPVEKLPKYAQAGFEGFKT
LNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIY
IAPMRSLVQEMVGSFGKRLATYGITVAELTGDHQLCKEEISATQIIVCTPEKWDIITRKG
GERTYTQLVRLIILDEIHLLHDDRGPVLEALVARAIRNIEMTQEDVRLIGLSATLPNYED
VATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQ
VLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPY
GFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGR
WTELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLPIESQMVSKLPDM
LNAEIVLGNVQNAKDAVNWLGYAYLYIRMLRSPTLYGISHDDLKGDPLLDQRRLDLVHTA
ALMLDKNNLVKYDKKTGNFQVTELGRIASHYYITNDTVQTYNQLLKPTLSEIELFRVFSL
SSEFKNITVREEEKLELQKLLERVPIPVKESIEEPSAKINVLLQAFISQLKLEGFALMAD
MVYVTQSAGRLMRAIFEIVLNRGWAQLTDKTLNLCKMIDKRMWQSMCPLRQFRKLPEEVV
KKIEKKNFPFERLYDLNHNEIGELIRMPKMGKTIHKYVHLFPKLELSVHLQPITRSTLKV
ELTITPDFQWDEKVHGSSEAFWILVEDVDSEVILHHEYFLLKAKYAQDEHLITFFVPVFE
PLPPQYFIRVVSDRWLSCETQLPVSFRHLILPEKYPPPTELLDLQPLPVSALRNSAFESL
YQEKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQNSEGRCVYIT
PMEALAEQVYMDWYEKFQDRLNKKVVLLTGETSTDLKLLGKGNIIISTPEKWDILSRRWK
QRKNVQNINLFVVDEVHLIGGENGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDV
AHWLGCSATSTFNFHPNVRPVPLELHIQGFNISHTQTRLLSMAKPVYHAITKHSPKKPVI
VFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYL
HEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMSVAAHLVIIMDTQYYNGKIHAYVDYP
IYDVLQMVGHANRPLQDDEGRCVIMCQGSKKDFFKKFLYEPLPVESHLDHCMHDHFNAEI
VTKTIENKQDAVDYLTWTFLYRRMTQNPNYYNLQGISHRHLSDHLSELVEQTLSDLEQSK
CISIEDEMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKVRGLIEIISNAAEYENIPI
RHHEDNLLRQLAQKVPHKLNNPKFNDPHVKTNLLLQAHLSRMQLSAELQSDTEEILSKAI
RLIQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQLPHFTSEHIKRCTDKGVE
SVFDIMEMEDEERNALLQLSDSQIADVARFCNRYPNIELSYEVVEKDSIRSGGPVVVLVQ
LEREEEVTGPVIAPLFPQKREEGWWVVIGDAKSNSLISIKRLTLQQKAKVKLDFVAPATG
AHNYTLYFMSDAYMGCDQEYKFSVDVKEAETDSDSD
NT seq
6411 nt
NT seq
+upstream
nt +downstream
nt
atggcggatgtgaccgcccgtagcctgcagtacgagtacaaggcgaactccaatcttgtc
cttcaagccgaccgttctctcattgaccgtacccgccgggatgagcctaccggagaggtg
ttatccctggttgggaagctggaggggactcggatgggagataaagctcaacgcaccaag
ccacagatgcaggaggaaagaagggccaagcgaagaaagcgtgatgaggaccggcatgac
atcaacaagatgaagggatacaccctgctgtcagagggcatcgacgagatggtgggcatc
atctataagcctaaaactaaggaaacgcgagagacctatgaggttctgctgagcttcatc
caggctgcccttggggaccagccacgtgatatcctttgtggggcagctgatgaggttcta
gcagtcctgaagaatgagaagcttcgcgacaaggaaaggcgaaaggagattgatctgctg
ctgggtcagacagatgataccagataccatgtgttagtgaacttgggcaaaaaaatcaca
gactatggtggagacaaggagatccagaatatggatgacaatattgatgagacctatggt
gtcaatgtacagtttgaatctgatgaggaggaaggtgatgaagacgtatttggagaggtc
cgagaagaggcttctgatgacgacatggaaggggacgaggctgttgtgcgctgcaccctc
tcagctaatctggtggcctcaggtgaactgatgagttccaagaagaaagatttgcatcct
cgggatattgatgcgttttggctacagcggcagctcagtcgcttctatgatgatgccatc
gtgtcccagaagaaagcagatgaagtgctggagattctgaagacagccagcgatgaccgg
gaatgtgaaaaccagctggttctgctgcttggtttcaatacttttgatttcatcaaagta
ctgcggcagcacaggaggatgattttatactgtaccttgctggccagtgctcagagtgaa
gctgaaaaggaaaggatcatgggaaagatggaagctgatccagagctttccaaattcctg
tatcagctgcatgaaactgagaaagaagatcttatccgggaagagcgaacccggagagag
cgagtgcgacagtcccggatggacacagatctggagaccatggacctggaccagggcgga
gaggcactggctccaaggcaggttctggacctggaggacctggtttttacccaaggcagc
cacttcatggcaaataaacggtgtcagcttcctgatgggtctttccggcgccagcgcaag
ggctatgaagaggtgcatgtgcctgctctgaagcccaaaccctttggctcagaggaacaa
ctgcttccagtggagaagctaccgaagtatgcccaggctgggtttgagggcttcaaaaca
ctgaatcggattcagagtaaactctaccgcgctgctctggagacagatgaaaacctgctg
ctgtgtgcgcctactggtgctggtaagaccaacgttgccctgatgtgtatgttgcgagag
atcgggaagcacattaacatggacggcactatcaacgtggatgactttaagatcatctac
atcgctcccatgcgatctctggttcaggagatggtcggcagtttcggaaagcgcctggcc
acctatggcatcactgtggcagaactgacgggtgaccaccagctgtgcaaggaggagatc
agcgccactcagatcatcgtctgtacccctgagaagtgggacatcatcacccgcaagggc
ggggagcgcacctacacccagctggtgcggctcatcatcctggatgagatccatcttctc
catgatgacagagggcctgttttagaagctttggtggccagggccattcgaaacattgaa
atgacccaagaggatgttcgtctcattggtcttagtgccaccctccccaattacgaagac
gtggccacctttttgcgtgtcgatcctgctaagggcctcttctacttcgacaacagcttc
cgcccagtgcctctggaacagacttacgtgggcatcacagaaaaaaaagctatcaagaga
ttccagatcatgaatgaaatcgtctatgagaaaataatggaacatgctggaaaaaatcag
gtgctggtgtttgtccattcccgaaaggagactgggaagacggccagggccattcgggac
atgtgcttagagaaggatactctgggtctgtttctgagagagggctcagcctccacagag
gtgcttcggacagaagctgagcagtgcaagaatctggagctgaaggatcttctcccctat
ggcttcgctatccatcatgcaggcatgaccagagttgatcgaacactcgtggaggatctt
tttgccgataaacatattcaggtcttagtttctacagcaaccctggcttggggtgtgaat
ctccctgcacatacggtcatcatcaaaggcactcaggtgtatagtccagagaagggccgc
tggacagaactgggtgcactggacattctacagatgctgggccgtgcaggcagaccccag
tatgacacgaagggtgaaggcatactcatcacttctcatggggagctccagtactacctg
tccctgctcaaccagcagctccccattgagagccagatggtgtcgaagctgcctgacatg
ctcaacgcggagatagtactggggaatgtccagaatgcaaaggatgcagtgaactggctg
ggctatgcttacctgtacatacgaatgctccggtccccgacgctctatggcatctctcac
gatgacctcaagggagaccccctgcttgaccagcgccgactggatctggttcatactgcg
gccctgatgctggataagaacaatctggtcaagtatgacaagaagacaggcaactttcag
gtgacggaactgggccgtatcgccagccactactacatcaccaacgacacagtgcagacc
tacaaccagctgctcaagcctaccctgagtgagatagagctcttccgggtcttctcgttg
tcctccgagtttaagaacatcacagtgagagaggaggagaagctggagctgcagaagctg
ctggaacgggtgcccatccctgtgaaggagagcatcgaggaacccagtgccaagatcaat
gtgctgctccaggcctttatctcacagctgaaattggagggctttgccctgatggccgac
atggtctacgtcacacagtcggctggccgattgatgcgcgccatcttcgaaattgtcctc
aatcgaggctgggcacagcttacagacaagaccctgaacctctgcaagatgattgacaaa
cgcatgtggcagtccatgtgtcctttgcgccagttccggaagctccccgaggaggtagtg
aagaagatcgagaagaaaaacttcccctttgagcgcctgtacgacttgaaccataatgag
atcggggagctgatccgcatgcccaagatggggaagaccatccacaagtacgtccacctc
ttccctaagctggagctgtccgtgcacctgcagcccattacgcgctccaccctgaaggtg
gagctgaccatcacaccagactttcagtgggatgagaaggtccatggctcctcggaggct
ttctggatcctggtggaggatgtggacagcgaggtgattttgcaccatgagtacttcctg
ctcaaggccaagtatgcgcaggatgagcacctcattacattctttgtcccggtctttgag
ccgctgcctccgcagtacttcatccgggtggtgtctgaccgctggctctcctgtgagacg
cagctgcccgtgtccttccgacacctgatcctcccggagaagtacccacctcccaccgag
ctcctggacctacagcccttgcctgtgtctgccctgagaaacagcgcctttgagagcctc
taccaagaaaagttccccttcttcaaccccatccagacccaggtgttcaacaccgtgtac
aacagtgacgacaacgtgtttgtgggtgcccccacgggcagcgggaagaccatctgcgca
gaatttgccatcctcaggatgctgctgcagaactcggaggggcgctgtgtctatatcacc
cccatggaggcgctggcagagcaggtttacatggactggtatgagaagttccaggacagg
ctcaacaagaaggtggtgcttctgacgggggagactagcacggacctgaagctgctgggc
aaaggcaacatcatcatcagcacccctgagaaatgggacatcctgtcccggcgctggaag
cagcgcaagaatgtccagaacatcaacctctttgtggtggatgaggtccacctgatcgga
ggcgagaatgggcctgtcctggaagtgatctgctctcggatgcgctacatctcctcccag
attgaacgacccattcgcattgtggcactgagctcctcattgtcgaatgctaaggatgtg
gcccattggctgggttgcagtgccacctccactttcaacttccaccctaacgtgcgcccc
gtgcccttggagctgcacatccagggcttcaacatcagccacacccagactcgcctgctg
tccatggccaagcctgtataccatgccatcaccaagcactcacccaagaagcccgtcatt
gtgttcgtgccctcgcgcaagcagacccgcctcacggccatcgacatcctcaccacatgc
gcggctgacatccagcggcagaggttcctgcactgcactgagaaggacctgatcccctac
ctggagaagctcagtgacagcacactcaaggagacgctgctcaacggggtgggctacctg
cacgaggggctcagccccatggagcggcgcctggtggagcagctcttcagctcaggggct
atccaagtggtggtggcttctcggagtctctgctggggcatgagtgtggctgcccacctt
gtgatcatcatggacacccagtactacaatggcaagatacacgcgtatgtggattatccc
atctatgatgtgttgcagatggtgggccacgccaaccgccctctgcaggatgacgagggc
cgctgtgtcatcatgtgccagggctccaaaaaggatttcttcaaaaagttcttgtatgag
ccgttgccggtagagtctcacctggatcactgtatgcatgatcacttcaatgcggagatt
gttaccaagaccattgagaacaaacaggatgctgtggactacctcacctggaccttcctg
taccgccgcatgacacagaaccccaattattacaacttgcagggcatctcacatcgtcac
ctgtcggaccatttgtcagaactggtggaacagaccctgagtgacctggaacagtccaag
tgcatcagcattgaggacgagatggatgtggcacctctgaacctgggcatgatcgctgcc
tactattatatcaactacaccaccattgagctctttagcatgtccctgaatgccaagacg
aaagtgcgaggccttatcgagatcatctcaaatgcggctgagtatgagaacatccctatc
cggcaccatgaggacaatctcctgcggcagttggctcagaaggtgcctcacaagctgaac
aacccgaagttcaatgacccgcacgtcaagaccaacctgcttctgcaggcacacctgtcc
cgcatgcagctgagtgccgagctgcagtcggacaccgaggaaatccttagcaaggccatc
cggctgatccaggcctgcgtggatgtcctctccagcaatgggtggctcagtcctgcgctg
gcagccatggagctggcccagatggtcacccaagccatgtggtccaaggactcctacctg
aaacaactgcctcacttcacctcagagcacatcaagcgttgcacagacaagggggtagag
agtgttttcgacatcatggagatggaggatgaagagcgaaacgcattgctccaactgagt
gacagccagattgcggacgtggcccgcttctgtaaccgctaccccaatattgagctgtcc
tatgaagtggtagagaaggacagcatccgcagcggtggccctgtggtggtgctggtgcag
ctggagcgagaagaggaagtcaccggccccgtgatcgcacctctctttccacagaaacgt
gaagagggctggtgggtagtgatcggcgacgccaagtccaacagcctcatctccatcaaa
agactgaccctgcagcagaaggcaaaggtaaaacttgacttcgtggccccagccaccggg
gcccacaactacaccctgtactttatgagcgatgcttacatgggctgtgaccaggaatac
aagttcagtgtggatgtgaaagaagctgagacagacagcgactctgattga
DBGET
integrated database retrieval system
