Sorex fumeus (smoky shrew): 130031596
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Entry
130031596 CDS
T10594
Symbol
DDX1
Name
(RefSeq) ATP-dependent RNA helicase DDX1
KO
K13177
ATP-dependent RNA helicase DDX1 [EC:
5.6.2.7
]
Organism
sfum Sorex fumeus (smoky shrew)
Brite
KEGG Orthology (KO) [BR:
sfum00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sfum03041
]
130031596 (DDX1)
03016 Transfer RNA biogenesis [BR:
sfum03016
]
130031596 (DDX1)
Enzymes [BR:
sfum01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
130031596 (DDX1)
Spliceosome [BR:
sfum03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
130031596 (DDX1)
Transfer RNA biogenesis [BR:
sfum03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
130031596 (DDX1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
SPRY
ResIII
CMS1
DUF5766
Motif
Other DBs
NCBI-GeneID:
130031596
NCBI-ProteinID:
XP_055978945
LinkDB
All DBs
Position
Unknown
AA seq
740 aa
AA seq
DB search
MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV
IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWH
GCRATKGLTKGKHYYEVSCHDQGLCRVGWSSMQASLDLGTDKFGFGFGGTGKKSHNKQFD
NYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHLKNQALFPACVLKNAELKF
NFGEEDFKFPPKDGFVGLSKASDSFVVKSQHTGNAQVAQTKFLPNAPKALIVEPSRELAE
QTLNNVKQFKKYIDNPKLRELLIIGGVAAREQLSVLDNGVDIVVGTPGRLDDLVSTGKLN
LSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQITSDGKRLQVIVCSATLHSFDVKKLSE
KIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKNHIRTDEVHAKDNTRPGGN
SPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFMQQGGGPDKKGHQF
SCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYV
HRIGRVGRAERMGLAISLVATEKEKVWYHVCSNRGKGCYNTRLKEEGGCTIWYNEMQLLS
EIEEHLNCTISQVEPDIKVPVDEFDGKVTYGQKRAAGGGNYKGHVDILAPTVQELAALEK
EAQTSFLHLGYLPNQLFRTF
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atggcggccttctcggagatgggtgttatgcctgagattgcacaagctgtggaagagatg
gattggcttctcccaactgatatccaggctgaatcgatcccattgatcctaggaggagga
gatgtccttatggctgctgaaacaggaagtggaaaaactggtgctttcagtattccagtc
atccagatagtttatgaaactctgaaagaccagcaggaaggcaaaaaaggaaaaacaaca
attaaaactggtgcttcagtgctcaacaaatggcagatgaacccatatgatagaggatct
gcttttgcaattggttcagatggtctgtgttgtcagagccgagaagtaaaggaatggcat
gggtgtagagctacaaaaggattgacaaaaggaaaacactactatgaagtctcctgtcat
gatcaagggttatgccgagtagggtggtcttctatgcaggcttccctagatcttggtact
gacaagtttggatttggttttggtggaacagggaaaaagtcccataataagcagttcgat
aattatggagaggaattcactatgcacgataccattggatgttacctagatattgataaa
gggcatgtcaagttctccaaaaatggaaaagaccttggtctggcctttgaaatacctcca
catttgaagaaccaagccctttttcctgcctgtgttctgaagaatgctgaactgaagttt
aattttggtgaagaagactttaagttcccaccaaaggatggtttcgttggtctttccaag
gcatctgatagttttgttgtcaaatctcaacatacaggtaatgcacaggtggcacaaacg
aaatttcttcccaatgcaccgaaagctctcattgtggaaccctctcgagagttagccgaa
caaactttgaataatgtcaagcagtttaagaaatacattgataacccaaaattaagggag
ctgctgataattggaggtgtggcggcacgcgagcagctttctgttttggataatggggta
gatatagttgttggcactccgggaagactagatgacttggtgtcgactggaaaactgaac
ttatctcaagttagattcctcgtcctggatgaagctgatggacttctttctcaaggttac
tctgattttatcaatagaatgcacaaccagattcctcagattacctcagatggaaaaagg
cttcaggtgattgtttgctctgctactttgcattcttttgatgtgaagaaactgtcagag
aagataatgcattttcccacctgggttgatttaaaaggagaagattctgttccagatacc
gtgcaccacgttgtagtccctgtgaaccctaaaactgaccgactctgggaaagacttggg
aagaaccacattagaaccgatgaagtacacgcaaaagacaatacaagacctggtggtaac
agtccagagatgtggtctgaagctattaaaatcctgaagggggagtatgctgttcgggca
atcaaggaacacaagatggatcaagcaattattttttgtagaaccaaaattgactgtgat
aacttggagcaatatttcatgcaacaaggaggagggcctgataaaaaaggacaccagttc
tcatgtgtttgtctccatggtgacagaaagcctcacgagaggaagcaaaacttggaaaga
tttaagaaaggagatgtaagattcttgatttgtacagatgtagctgccagaggaattgac
atccatggtgttccttacgttataaatgtcaccttgcctgatgaaaagcaaaactatgtt
catagaattggcagagtaggaagagctgaaaggatgggtttggccatttccctggtggca
acagaaaaagaaaaggtgtggtaccatgtatgtagtaatcgtggaaaagggtgttacaac
acaagactcaaggaagaaggtggctgtaccatttggtacaatgagatgcagttgctctct
gagattgaagagcacctgaactgcaccatctctcaggtggagccggatataaaggtgcca
gtcgacgaatttgatgggaaagttacctatggccaaaaaagggccgctggtggtggaaac
tataaaggccatgtggatatattggcacctaccgttcaagagttggctgcccttgaaaag
gaggcacagacatctttcctgcatcttggctaccttcctaaccagctgttcagaaccttt
tga
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