Sorex fumeus (smoky shrew): 130032097
Help
Entry
130032097 CDS
T10594
Symbol
ARID1A
Name
(RefSeq) AT-rich interactive domain-containing protein 1A isoform X1
KO
K11653
AT-rich interactive domain-containing protein 1
Organism
sfum Sorex fumeus (smoky shrew)
Pathway
sfum03082
ATP-dependent chromatin remodeling
sfum04714
Thermogenesis
sfum05225
Hepatocellular carcinoma
Brite
KEGG Orthology (KO) [BR:
sfum00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
130032097 (ARID1A)
09150 Organismal Systems
09159 Environmental adaptation
04714 Thermogenesis
130032097 (ARID1A)
09160 Human Diseases
09162 Cancer: specific types
05225 Hepatocellular carcinoma
130032097 (ARID1A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sfum03000
]
130032097 (ARID1A)
03021 Transcription machinery [BR:
sfum03021
]
130032097 (ARID1A)
03036 Chromosome and associated proteins [BR:
sfum03036
]
130032097 (ARID1A)
Transcription factors [BR:
sfum03000
]
Eukaryotic type
Helix-turn-helix
ARID
130032097 (ARID1A)
Transcription machinery [BR:
sfum03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
130032097 (ARID1A)
Chromosome and associated proteins [BR:
sfum03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
130032097 (ARID1A)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
BAF250_C
ARID
Motif
Other DBs
NCBI-GeneID:
130032097
NCBI-ProteinID:
XP_055979698
LinkDB
All DBs
Position
Unknown
AA seq
2291 aa
AA seq
DB search
MAAQVAPAAASSLGNPPPPPSELKKAEQQQQREEAGGEAAAAAAAAERGEMKAAAGQESE
GPAVGPPPPLGKELQDGAESNGGGGGAGAGGGGGGGPGAEPDLKNSNGNAGPRPALNNNL
PEPPGGGGGGSSDGVGAPPHSAAAALPPPAYGFGQPYGRSPSAVAAAAAAVFHQQHGGQQ
SPGLAALQSGGGGGGLEPYAGPQQNSHDHGFPNHQYNSYYPNRSAYPPPPQAYALGSPRG
GTPGSGAAAAAGSKPPPSSSASASSSSSSFAQQRFGAMGGGGPSAAGGGTPQPTATPTLN
QLLTSPSSARGYQGYPGGDYGGGPQDGGAGKGPADMASQCWGAAAAAAAAAAAASGGAQQ
RSHHAPMSPGSSGGGGQPLARTPQPSSPMDQMGKMRPQPYGGTNPYSQQQGPPSGPQQGH
GYPGQPYGSQTPQRYPMTMQGRAQSTMGGLSYAQQIPPYGQQGPSGYGQQGQTPYYNQQS
PHPQQQQQPPYSQQPQSQNPHAQSSYQQPPQSQPPQLQSSQAPYSQQPSQPPHQQSPTPY
PSQQSTTQQHSQSQPSYSQPQAQSPYQQQQPQQPASSTLSQQAAYPQPQSQQSQQTAYSQ
QRFPPPQELSQDSFGSQASSAPSMTSSKGGQEDMNLSLQSRPSSLPDLSGSIDDLPMGTE
GALSPGVSTSGISSSQGEQSNPAQSPFSPHTSPHLPGIRGPSPSPVGSPASVAQSRSGPL
SPAAVPGNQMPPRPPSGQSDSIMHPSMNQSSIAQDRGYIQRNPQMPQYSSPQPGSALSPR
QPSGGQMHTGMGSYQQNSMGSYGPQGSQYGPQGGYPRQPNYNALPNANYPSAGMAGSMNP
MGAGGQMHGQPGIPPYGTLPPGRMSHASMGNRPYGPNMANMPPQVGSGMCPPPGGMNRKT
QETAVAMHVAANSIQNRPPGYPNMNQGGIMGTGPPYGQGINSMAGMINPQGPPYPMGGTM
ANNSAGMAASPEMMGLGDVKLTPATKMNNKADGTPKTESKSKKSSSSTTTNEKITKLYEL
GGEPERKMWVDRYLAFTEEKAMGMTNLPAVGRKPLDLYRLYVSVKEIGGLTQVNKNKKWR
ELATNLNVGTSSSAASSLKKQYIQCLYAFECKIERGEDPPPDIFAAADSKKSQPKIQPPS
PAGSGSMQGPQTPQSTSSSMAEGGDLKPPTPASTPHSQIPPLPGMSRSNSVGIQDAFPDG
SDPTFQKRNSMTPNPGYQPSMNTSDMMGRMSYEPNKDPYGSMRKAPGSDPFMSSGQGPNG
GMGDPYSRAAGPGLGNVAMGPRQHYPYGGPYDRVRTEPGIGPEGNMGTGAPQANLMPSNP
DSGMYSPSRYPPQQQQQQRHDSYGNQFSTQGTPSSSPFPSQQTTMYQQQQQQNYKRPMDG
TYGPPTKRHEGEMYSVPYSTGQGQAQQQQLPPAQPQPSSQQQAAQPSPQQDVYNQYGNAY
PATAAAAAERRPAGGPQNQFPFQFGRDRVSAPPGTNAQQNMPPQMMGGPIQASAEVSQQG
TMWQGRNDMTYNYANRQSTGSAPQGPAYHGVNRTDEMLHTDQRANHEGPWPSHGTRQPPY
GPSAPVPPMTRPPPSNYQPPPSMQNHIPQVSSPAPLPRPMENRTSPSKSPFLHSGMKMQK
AGPPVPASHIAPAPVQPPMIRRDITFPPGSVEATQPVLKQRRRLTMKDIGTPEAWRVMMS
LKSGLLAESTWALDTINILLYDDNSIMTFNLSQLPGLLELLVEYFRRCLIEIFGILKEYE
VGDPGQRTLLDPGRFSKESSPAPVEGEEEEEEDLLGPKLEEEEEEEVVENDEEMAFSGKD
KEASENSEEKLISKFDKLPVKIVQKNDPFVVDCSDKLGRVQEFDSGLLHWRIGGGDTTEH
IQTHFESKTELLPTRPQGPCPPIPRKHVTAMENMPGITEQEGPPPDGLPEKRITATMDDM
LSSRSSTLTEEGAKNAETTKESSKFPFSISPAQSHRNIKILEDEPHSKDETPLCTLLDWQ
DSLAKRCVCVSNTIRSLSFVPGNDFEMSKHPGLLLILGKLILLHHKHPERKQAPLTYEKE
EEQDQGVSCNKVEWWWDCLEMLRENTLVTLANISGQLDLSPYPESICLPVLDGLLHWAVC
PSAEAQDPFSTLGPNAVLSPQRLVLETLSKLSIQDNNVDLILATPPFSRLEKLYSTMVRF
LSDRKNPVCREMAVVLLANLAQGDSLAARAIAVQKGSIGNLLGFLEDSLAATQFQQSQAS
LLHMQNPPFEPTSVDMMRRAARALLALAKVDENHSEFTLYESRLLDISVSPLMNSLVSQV
ICDVLFLIGQS
NT seq
6876 nt
NT seq
+upstream
nt +downstream
nt
atggccgcgcaggtcgcccccgccgccgccagcagcctgggcaacccgccgccgccgccc
tcggagctgaagaaagcggagcagcagcagcagcgggaggaggcggggggcgaggcggcg
gcggcggcggcggcggccgagcgcggggaaatgaaggcagccgctgggcaggaaagcgag
ggccccgccgtgggcccgccgccgccgctgggaaaggagctgcaggacggggccgagagc
aatgggggaggcggcggcgccggagccggcggcggcggcggcggcgggcccggcgcggag
ccggacctgaagaactcgaacgggaacgcgggccctaggcccgccctgaacaataacctc
ccggagccgcccggcggcggcggcggcggcagcagcgacggggtgggggcgcctcctcac
tcggccgcggccgccctgccgccccccgcctacggcttcgggcagccctacggccggagc
ccgtcggccgtcgccgccgccgcggccgccgtcttccaccaacaacatggcggacaacaa
agccctggcctggcagcgctgcagagcggcggcggcggcgggggcctggagccctacgcg
gggccccagcagaactcgcacgaccacggcttccccaaccaccagtacaactcctactac
cccaaccgcagcgcctaccccccgcccccccaggcctacgcgctgggctccccgagaggt
ggcactccgggctccggcgcggcggcggccgccggctccaagccgcctccctcctccagc
gcctccgcctcctcgtcgtcttcgtccttcgctcagcagcgcttcggggccatgggggga
ggcggcccctccgcggccggcgggggcaccccccagcccaccgccactcccaccctcaac
caactgctcacgtcgcccagctcggcccggggctaccagggctaccccgggggcgactac
ggcggcgggccccaggacgggggcgccggcaagggcccggcggacatggcctcgcagtgc
tggggggctgcggcggcggcagcggcggcggcggccgccgcctcgggaggggcccaacaa
aggagccaccacgcgcccatgagccccgggagcagcggcggcggggggcagccgctcgcc
cggaccccgcagccgtccagtccgatggatcagatgggcaagatgagacctcagccatat
ggcgggactaacccatactcgcaacaacagggacctccatcaggaccacagcaaggacat
gggtacccagggcagccatatgggtcccagaccccgcagcggtacccgatgaccatgcag
ggccgggcacagagtaccatgggcggtctctcttatgcacagcagattcctccctatgga
caacaaggccccagtgggtatggtcagcagggccagactccatattacaaccagcagagt
cctcacccccagcagcagcagcagccgccctactctcagcagccacaatcccagaaccct
catgctcaatcatcgtatcagcaaccaccgcagtcgcagccaccacagctccagtcctcc
caggctccatattcccagcagccatcccagcctccacatcagcagtcccctactccgtac
ccctctcagcagtctacaacccagcagcactcccagagccagccctcctactcacagcca
caggcacagtctccctaccagcagcagcaacctcagcagccagcatcctcgacgctttcc
cagcaggctgcataccctcagccccagtctcagcagtcacagcaaactgcctattctcag
cagcgcttccctccaccacaggaattatctcaagattcatttgggtctcaggcatcctca
gccccttcaatgacctccagtaagggaggacaagaagatatgaacctaagtcttcagtca
agaccctcgagcttgcctgatctgtctggttcgatagacgatctcccaatggggacagaa
ggagctctgagccctggagtgagcacatcagggatttccagcagccaaggagagcagagt
aacccggctcagtctcctttctctcctcacacttcccctcacttacctggcattcgaggc
ccctccccatcccctgttggctctcctgccagtgttgctcagtctcgctcaggaccactc
tcgcctgctgcagtgccaggcaaccagatgccacctcggccacccagtggccagtcagac
agcatcatgcatccttccatgaatcaatcaagcattgcccaagatcgaggttacatccag
aggaacccccaaatgccccagtacagctccccccagcctgggtcagccttatctccgcgt
cagccttccggaggacagatgcacacaggcatgggctcttaccagcagaactccatggga
agttatggaccccaagggagtcagtatggcccacagggaggctaccccaggcagccaaac
tataatgccttgcccaatgctaactatcccagtgcaggcatggctggaagcatgaaccct
atgggtgctggaggtcaaatgcatgggcaacctggcatcccaccttatggcacactccct
cctgggagaatgagtcatgcctccatgggcaaccggccttatggccctaatatggccaat
atgccacctcaggttgggtcagggatgtgccccccaccagggggcatgaaccggaaaact
caagaaactgctgtcgccatgcatgttgctgccaattctatccaaaacagaccaccaggc
tatcctaatatgaatcaagggggaataatgggaaccggacctccctatgggcaagggatt
aatagtatggccggcatgatcaaccctcagggacccccatatcctatgggtggaaccatg
gccaacaattcagcaggaatggcagccagcccagagatgatgggtcttggagatgtcaag
ttaactccagccaccaagatgaacaacaaagcagatgggacacctaaaacagaatctaaa
tccaagaaatccagttcttctactacaaccaacgagaaaatcaccaagttatatgagttg
ggcggtgagcctgagaggaagatgtgggtggaccgttatctggccttcacggaggagaag
gcgatgggcatgacaaatctgcctgctgtgggcaggaaacctctggacctctatcgcctg
tatgtgtctgtgaaggagattggtggattgactcaggtcaacaagaacaaaaaatggcgg
gaacttgcaactaacctcaatgttggcacctcaagtagtgccgccagctccttgaaaaaa
cagtatatccagtgtctctatgcctttgaatgcaaaattgaacggggagaagacccaccc
ccagatatctttgcagctgctgattccaagaagtcccagcccaagattcagcctccctct
cctgcgggatcagggtctatgcagggcccacagacacctcaatcaaccagcagttccatg
gcagaaggaggagacctgaagccaccaaccccagcatccacaccacacagtcagataccc
cccttgccaggcatgagcaggagcaattcagttgggatccaggatgcctttcctgatgga
agtgaccccacattccagaagcggaattccatgactccaaaccctgggtaccagcccagt
atgaatacctctgacatgatggggcgcatgtcctacgagccaaataaggatccttatggc
agcatgaggaaagctccagggagtgatcccttcatgtcctcagggcagggccccaatggt
gggatgggggacccctacagccgagctgctggccctgggcttggaaatgtggcaatggga
ccgcggcagcactacccctatggaggtccttatgacagagtgaggacggaacctggaata
ggacctgagggaaacatgggcactggagccccacaagctaatctcatgccttccaaccca
gactcggggatgtattctcctagccgctaccctccgcagcagcagcagcagcagcgacat
gattcctatggcaatcagttctccactcaaggcaccccttctagcagccccttcccgagc
cagcagaccacaatgtatcaacagcagcagcagcagaattacaagaggccaatggatggc
acttatggtcctcctaccaagcgacatgaaggagagatgtacagtgtgccatacagcaca
gggcaggggcaagcccagcagcaacagttgccccctgcccagccccagccctccagccag
caacaagctgcccagccttcccctcagcaagatgtgtacaaccagtatggcaatgcctac
cctgccactgccgcggcagctgctgagcgccgaccagcaggcggccctcagaaccagttt
ccattccagtttggccgagaccgtgtctctgcaccccccggcaccaatgcccagcagaac
atgccaccacaaatgatgggtggacccatacaggcatcagctgaggtttctcagcaaggc
actatgtggcaggggcgtaatgacatgacctacaattatgccaacaggcagagcacgggt
tctgccccccagggccctgcctatcatggtgtgaaccgaacagatgaaatgctgcacacg
gatcagagggccaaccatgaaggcccttggccttcccatggcactcgccagcccccatat
ggtccctctgctcccgtgccccccatgacaaggccccctccatccaactaccagccccca
ccaagcatgcagaatcacattcctcaggtatccagccccgctccccttccccggccaatg
gagaaccgcacgtctccgagcaagtctccattcctgcactctgggatgaagatgcagaag
gcaggccctccagtacctgcctcacacatagcacctgcccctgtgcagccccccatgatt
cggcgggacatcaccttcccacctggctctgtcgaagccacacaacctgtgttgaagcag
aggaggaggctcacgatgaaagacattggaaccccggaggcatggcgggtaatgatgtcg
ctcaagtctgggttgctggcagagagcacgtgggcattagacaccatcaacatcctgtta
tatgatgacaacagcatcatgaccttcaacctcagtcagctcccagggttattagagctc
cttgtggaatatttccgacgttgcctgattgagatctttggcattttaaaggagtatgag
gtgggtgacccagggcaaagaacactactggaccctgggagattcagcaaggaatctagt
ccagcccctgtagagggggaggaggaagaagaagaagaccttctaggtcctaagctagag
gaggaagaagaggaggaagtagttgaaaatgatgaggagatggccttttctggcaaggac
aaagaagcctcggagaatagtgaggagaaactgattagtaagtttgacaagcttccagtt
aagatcgtgcagaagaacgacccgtttgtggtagactgctcagataagcttgggcgtgta
caggagtttgacagtggcctgctgcactggcggattggtgggggagacaccactgagcat
atccagacccactttgagagcaagacagagctgctgcccacccggcctcaagggccttgc
ccgccaatcccccggaaacatgtcacagccatggagaatatgccagggataacagagcaa
gagggacccccaccagatggccttccggaaaaacggatcacagccactatggatgatatg
ttgtccagtcggtctagcacattgaccgaggaaggagctaagaatgcagagaccaccaag
gagagcagcaagtttccattcagcatcagcccggcacagagccaccggaacatcaagatc
ctagaggatgaaccccacagtaaagatgagaccccactgtgcacccttctggactggcag
gattcccttgccaagcgctgtgtctgtgtctccaataccatccgaagcctgtcgtttgtg
ccaggtaacgactttgagatgtccaaacacccggggcttctgctgatcctgggcaagctg
atcctgctgcaccacaaacacccagaacggaagcaggcaccactaacttatgagaaggag
gaggaacaggaccaaggggtgagctgcaacaaggtagagtggtggtgggactgcttggag
atgctccgggaaaacaccttggtcacactcgccaatatctcggggcagttggacctctcc
ccataccctgagagcatttgtctgcctgtcctggacggactcctgcactgggcagtctgc
ccttcagctgaagcccaggaccctttttcaaccctgggccccaatgccgtcctctcccct
cagagactggtcttggaaaccctcagcaaactcagcatccaggacaacaacgtggacctg
atcctggccactccccccttcagccgcctggagaagttgtatagcaccatggtgcgcttc
ctcagtgaccgaaagaacccggtatgccgggagatggctgtggtactgctggccaacctg
gcacagggtgacagcctggcagcccgtgccattgcagtacagaagggcagcatcggcaac
ctcttgggcttcttggaggacagtctcgctgctacacagttccagcagagccaggcgagc
ctgcttcatatgcagaacccacctttcgagccaactagtgtggacatgatgcggcgggct
gcccgcgcgctgctggcactggccaaggtggacgagaaccactcggagttcacgctgtat
gagtcacggctgttggacatctcagtatcaccattgatgaactcattggtttcacaagtc
atttgcgatgtactgtttttgattggccagtcatga
DBGET
integrated database retrieval system
