Sorex fumeus (smoky shrew): 130032812
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Entry
130032812 CDS
T10594
Name
(RefSeq) protocadherin beta-18-like
KO
K16494
protocadherin beta
Organism
sfum Sorex fumeus (smoky shrew)
Brite
KEGG Orthology (KO) [BR:
sfum00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
sfum04515
]
130032812
Cell adhesion molecules [BR:
sfum04515
]
Cadherins
Protocadherins
130032812
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_C_2
Cadherin_CELSR2_9th
MCR_gamma
Motif
Other DBs
NCBI-GeneID:
130032812
NCBI-ProteinID:
XP_055980385
LinkDB
All DBs
Position
Unknown
AA seq
803 aa
AA seq
DB search
MFGKGAMKPGELRSQQIRQVLIFFVFLGGTLVCSEIQRYSVAEETEVGFIIGNVLKDIGS
GVEDLTLRAARVIFDNYKTYLQLDMQTGNLLLNEQLDREALCDLTEPCILAFQVLFENPL
QFFRAELWVKDINDHTPTFLEKHILLKIPESTSPGTSFQMDSAQDLDAGKNGVQNYTLSS
NSHFHLKIQDSDEGQKYPELLLEQSLDREKEPELRLILTAFDGGSPPRSGTALVRILVLD
VNDNAPKFEKTVYEVHVPENSPIDSLILKVSATDLDTGTNGEIAYSFSHVSRDIRKTFEI
HQVSGEVHLKASLDFELIQSYTINIQAIDGGSLSGKSAILVRVVDVNDNSPEILMTSLSS
PIPENSTPEMVVAVFSIRDQDTGDNGKTICSIQDDLPFFLKPTFKNFYTVVTERPLDRES
QAEYNITITVTDMGTPRLQTQHTITVLVSDVNDNAPTFSQPSYTLLVGENNSPALHIGSV
SATDPDAGSNAQVTYSLLPSQDPQLPLASLVSINADNGQLFALRSLDFEAVRAFEFSVGA
WDRGSPALSSQARVRVLVLDRNDNAPFVLYPLQNASAPCSELVPRAAEAGYLVTKVVAVD
SDSGQNAWLSFQLLKATEPGLFSVWAHNGEVRTARPLSERDAPKHRLLVLVKDNGEPPLS
ASITLHVLLVDGFSQPFLPLPDAPPDAPDSDHLTVYLVVALACVSSLFLFSVLVFVAVRL
CRRAGPPAGGPYPLPDAHFPGHLLDVSGAGTLSHSYQYEVCLAGGAGTNEFKFLKPILPD
FQDHVTGKNSEETPTLRNSFGFN
NT seq
2412 nt
NT seq
+upstream
nt +downstream
nt
atgtttggcaaaggagccatgaaacctggagaactgcgctcccaacagataaggcaagtg
ctgattttctttgttttcctgggagggactttggtatgttcggagatccagcgctattct
gtggcagaggaaacggaggtgggcttcattatcggcaacgtgttaaaagacataggttcg
ggtgtggaagatctgactctgagggcagccagggtcatctttgacaattataaaacttac
ctgcagttggatatgcaaaccggcaacttgctattgaatgagcaactggaccgtgaggcg
ctgtgtgatctcactgagccatgtatattggctttccaggtgctatttgaaaatcctttg
caattttttcgggctgagctttgggtcaaagatataaatgatcacactcctacattccta
gaaaagcacattcttctgaaaatcccagaaagtacttctccagggacctcatttcaaatg
gatagtgctcaagacttggatgcaggaaagaatggtgtccaaaattacacattaagctca
aattctcatttccatcttaaaatacaagacagtgatgagggccaaaaatacccagaactg
ttactagaacaatctctagacagagaaaaggagccagagctaagattaatactaacagct
tttgatgggggatcaccccccaggtctggaactgcactggttcgtattttggtcctagat
gtcaatgacaatgcccccaagtttgaaaagacagtctatgaggttcacgtgccagaaaac
agccctatagactccttaatcctgaaggtgtctgccacagatttagatacaggcacaaat
ggagaaatagcttattcattttcacatgtctccagagacattaggaaaacatttgaaatc
caccaagtttctggggaagtccacttaaaagcatctctggattttgagttaatccaatct
tacacaataaatatacaggccattgatggtggcagcctttcaggaaaatcagcaatttta
gttcgagttgtagatgtcaatgacaactcaccagaaatactcatgacatctctgagcagc
cccattccagaaaattctactcctgaaatggtggtcgctgtttttagcatccgagaccaa
gatactggagacaatgggaagacgatttgttccatccaggatgatctcccctttttcttg
aagcctaccttcaagaatttctacaccgtagtgacagagcgcccgctggaccgagagagc
caggcagagtacaacatcaccatcacggtgacagatatgggcacccccaggctgcaaaca
cagcacaccatcacagtgctggtgtctgacgtgaacgacaacgcccccaccttcagccag
ccctcctacaccctgctggtgggcgagaacaacagccccgcactgcacataggcagcgtg
agcgccactgaccccgacgcgggcagcaacgcccaggtgacctactcgctgctgccttcc
caagacccacagctgccgctcgcctcgctggtgtccatcaacgccgacaacgggcagctg
ttcgcgctgcgctcgctggacttcgaggccgtgcgcgctttcgagttcagcgtgggcgcg
tgggaccgcggctcgcccgcgctcagcagccaggcgcgggtgcgcgtgctggtgctggac
cgcaatgacaacgcgcccttcgtgctgtacccgctgcagaacgcttcggcgccctgcagc
gagctggtgcccagggcggcagaggcgggctacctggtgaccaaggtggtggcggtggac
agcgactcgggccagaacgcctggctgtctttccagctgctcaaggccacggagcccggg
ctcttcagcgtgtgggcgcacaatggcgaggtgcgcactgcgcggccgctcagcgagcgc
gacgcgcccaagcacaggctgctggtgctggtcaaggacaatggggagccgccactgtcg
gccagcatcacgctgcacgtgctgctggtggatggcttctcgcagcccttcctgccgctg
cccgacgcgccgcccgacgcgcccgacagtgaccacctcactgtctacctggtggtggct
ttggcctgcgtgtcgtcgctcttcctcttctccgtactggtcttcgtggcggtgcgcctg
tgccggcgggccggcccgcctgcggggggcccctacccgctgcccgacgcgcacttccca
ggacacctgctggacgtcagtggcgctgggaccctgtcgcacagctaccagtatgaggtg
tgtctggcgggcggcgctggcactaatgagttcaagttcctcaagcctatcttgccagat
ttccaggatcacgttactgggaaaaatagtgaggaaacccccactctccgcaatagtttt
ggatttaattag
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