Sorex fumeus (smoky shrew): 130033096
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Entry
130033096 CDS
T10594
Symbol
DDX46
Name
(RefSeq) probable ATP-dependent RNA helicase DDX46
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
sfum Sorex fumeus (smoky shrew)
Pathway
sfum03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sfum00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130033096 (DDX46)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sfum03041
]
130033096 (DDX46)
Enzymes [BR:
sfum01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
130033096 (DDX46)
Spliceosome [BR:
sfum03041
]
Complex A
U2 snRNP components
U2 related factors
130033096 (DDX46)
Complex B
130033096 (DDX46)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
KH_12
KH-I_KHDC4-BBP
CdAMP_rec
FAM176
Motif
Other DBs
NCBI-GeneID:
130033096
NCBI-ProteinID:
XP_055980769
LinkDB
All DBs
Position
Unknown
AA seq
1033 aa
AA seq
DB search
MGRESRHYRKRSASRGRSGSRSRSRSPSDKRSKRSDDRRSRSRDRDRRRERSRSRDKRRS
RSRDRKRLRRSRSRERDRSRERRRSRSRDRRRSRSRSRGRRSRSSSPGNKSKKTENRRSR
SKEKTDSGESSKEKKKDKDDKEDEKEKDAGNFDQNKLEEEMRKRKERVEKWREEQRKKAM
ENIGELKKEIEEMKQGKKWSLEDDDDDEEDPAEAEKEGNEMEGEELDPLDAYMEEVKEEV
KKFNMRSVKGGGGNEKKSGPTVTKVVTVVTTKKAVVDSDKKKGELMENDQDAMEYSSEEE
EVDLQTALTGYQTKQRKLLEPVDHGKIEYEPFRKNFYVEVPELAKMSQEEVNVFRLEMEG
ITVKGKGCPKPIKSWVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTG
SGKTIAFLLPMFRHIMDQRSLEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCV
YGGTGISEQIAELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGF
EPQVMRIVDNVRPDRQTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIV
IEEEKKFLKLLELLGHYQESGSVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRD
SIINDFKNGTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYA
YTFITEDQARYAGDIIKALELSGTTVPPDLEKLWSDFKDQQKAEGKIIKKSSGFSGKGFK
FDETEQALANERKKLQKAALGLQDSDDEDAAVDIDEQIESMFNSKKRVKDMAAPGTSSVP
APTAGNAEKLEIAKRLALRINAQKNLGIESQVDVMQQATNAILRGGTILAPTVSAKTIAE
QLAEKINAKLNYVPLEKQEEERQDGGQNESFKRYEEELEINDFPQTARWKVTSKEALQRI
SEYSEAAITIRGTYFPPGKEPKEGERKIYLAIESANELAVQKAKAEITRLIKEELIRLQN
SYQPTNKGRYKVL
NT seq
3102 nt
NT seq
+upstream
nt +downstream
nt
atgggccgggagtcacgtcactaccggaagcgatcagcatctcgaggccgctctggaagt
cggtctagaagtcgctcaccctcggacaaaagaagtaaacggagtgatgacagacgttct
agaagcagagatagagaccgaaggagagagaggtctcgaagcagggataaaagaagatct
cggtcaagggaccgaaaacgcctgagacgttccagaagtagagaaagagacaggagtcgg
gaacgaagaagatctcgaagtcgagacaggaggcggtcaaggagtcgaagccggggccgg
cgatcccgatcttccagtcctggcaacaaaagcaagaaaactgagaatagaagatctagg
tccaaagagaaaacagatagtggggaaagttctaaagagaagaaaaaagacaaagacgac
aaggaagatgaaaaagaaaaagatgctggcaactttgaccagaataagctagaagaagag
atgagaaagcgtaaagaaagagtagaaaaatggcgagaagagcaacgtaaaaaggccatg
gaaaatatcggagaactgaaaaaggagattgaagaaatgaaacaagggaaaaaatggagt
ttagaagatgatgatgatgatgaagaagatcctgcagaagctgagaaggaaggaaatgaa
atggagggtgaagaattagatcctttagatgcttacatggaagaagtcaaagaagaagtg
aaaaaatttaacatgagaagtgtaaaaggtggtgggggaaatgagaagaagtctgggcca
accgtcacaaaagttgtcactgttgtgacgaccaaaaaggcagttgtagattctgataag
aagaaaggtgagctgatggagaatgatcaagatgccatggagtattcttcagaggaggaa
gaggttgatcttcagacagctcttacagggtatcagacaaagcagagaaagcttctagaa
ccagttgatcatggaaaaattgaatatgaaccatttagaaaaaacttttatgttgaagtt
ccagaattagccaaaatgtcccaagaggaggtgaatgtatttcggttggaaatggaaggc
attacggtaaagggaaaaggttgtcccaaaccaattaaatcttgggtccaatgtggaatt
tccatgaagatcttaaattctctcaaaaagcatggttatgaaaagcccacaccaatccag
acccaagcaattcctgctataatgtctggaagggatttgattggtattgccaagacagga
agcgggaagaccattgcttttcttttgcctatgtttagacatatcatggatcagaggtca
ttagaagaaggagaaggacctatagctgtcatcatgactccaactcgagaactggcttta
caaattactaaggaatgcaagaagttttcgaagactttgggacttcgcgtagtttgtgtt
tatggaggaacgggaattagtgagcagattgctgaactgaaaagaggtgctgaaattatt
gtttgtacacctggtcgaatgattgacatgttagcagctaacagtggtcgggtcacaaat
cttcgaagagtgacttatgttgttttagatgaagcagacagaatgtttgacatgggtttt
gaaccacaggttatgcgcattgtggataatgttcgtcctgatcgacagacagttatgttt
tctgctactttccccagagctatggaggcgctggctcgcagaatcctgagtaaacccatt
gaagtgcaggttggaggcaggagtgtggtttgctcagatgtggaacaacaagtgattgtg
atagaagaggaaaagaaatttttgaaattacttgaacttctaggccattatcaagaatcc
ggttctgtcattatatttgttgataagcaggaacatgctgatggtcttctgaaggattta
atgagagcttcttacccttgcatgtctcttcatggagggattgatcagtatgacagagat
agcatcataaatgattttaagaatgggacctgcaaacttcttgtagctacttctgttgct
gctcgaggtctcgatgtgaagcacctgattcttgtagtaaattacagctgtcccaaccat
tatgaggattatgtacacagagcaggacggactggaagagcaggcaacaaaggttatgca
tatacttttatcacagaagatcaagctcgatatgctggtgacataattaaagctcttgaa
ttatcaggaactacagtgcctcctgatctagagaaactttggagtgatttcaaagaccag
caaaaagctgaagggaaaataatcaagaagagtagtggtttctctggtaaaggattcaaa
tttgatgaaactgagcaagctttggctaatgagaggaagaagttacaaaaagcagctctt
ggtctgcaagattcagatgatgaagatgctgcagttgatattgatgagcagattgaaagc
atgtttaattcaaagaagagagtgaaggatatggctgcacctggaacatccagtgtccct
gctcccactgccgggaatgcggagaaattagaaattgctaaaagattggcccttagaatc
aatgctcagaagaatttgggcatcgagtctcaggtagatgtgatgcaacaggccaccaat
gcgattctcagaggtggcaccattttggctcctactgtatctgcaaaaaccattgcagaa
caacttgctgaaaagatcaatgccaagcttaattatgtacctttggagaaacaagaagaa
gagagacaagatggtggtcaaaatgaatcttttaagagatatgaggaagaattagagatt
aatgacttcccacagactgctaggtggaaagttacctctaaggaagctctgcagagaatt
agtgaatattctgaggctgcaattacaatcagaggaacgtacttcccacctggaaaagaa
cccaaggaaggagagaggaaaatctacttggctattgaaagtgccaatgaactggcagtg
caaaaagcaaaggcagaaatcaccaggctcataaaagaagaactaatccggttgcaaaat
tcatatcaaccaacaaataaaggaagatacaaagtcctttag
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